Bhi09G000645 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000645
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Tubulin alpha chain
Location	chr9: 17432469 .. 17433668 (+)
RNA-Seq Expression	Bhi09G000645
Synteny	Bhi09G000645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTAATTTCATAAGTAATTGTAAGCAATCAGGTATATGGTATGATAGGCAACCTCTTAAATTCCTCTTAAATCCGTTTTTCACTCCTGGAAAAATAGTCTGTACTTTATGTATTTAGGAATTAATTACATCTTGGGCTTCAACCTTGCTGTGGTTTAGTACAAATATTCTTAATTTTATTTTATTTTCAATATTCCAGCGACATGTTTCCTTGCAGTAGACGCCGCAAAGGCTGAAACTTTAAAACATATGTGGGTAAGAGATTATAGTCGTCGTGTATTGTGTTTCTAAAGCCACTTGAATCTATATTCTTTTAAGACTTTAATTCCCTATAATCCATTTATTTAATTTACTTTTGAAGATATTGAATACTATTTTCACCAATCCTTAAGAATCTAGATGATAAAATCTGTGTTGTATACAATTATAACTCTATTTCGTCTTGGAGAAATGTAATGTTTATTGATCTACACGTCGAGATCTTGAACTAGATGACGTTTCTTGCCACATTTTTTTGTTCTGTACTTTATTTTTGCATTTTATGTTCTTGAATCCATGGCATATGAAGAATTTCTGATAGACAGGATTCGGATCTATGGATTTTGTAGTTTATTTTGGATGTTTGTTATACCCCGATGGAAGATTAAGAAGCTATTTCGTATGTTAAATCAACCAAATTCTCTAAGCCTTGTTTGTAAATTGGTGTAGCCCGATGGCCAAATGCCAGGCGATCCTACTCTCGGCGGAGGTGACGATGCTTTCAACACCCTTTTTAGTGAAATCGGTGTTGGAAAGCATGTTCCTCATGTTGTTTTTGTTGATCTTGAGCCTATTGTTATCGATGAGGTATTTTGTAATGGTTATATGTTTCTACTTTACATGTTGTTTGTTTCGTTCTTACTTATGAGACATGGGTCGCAAAAGATGTTTATTTTGAAGTCTCAGATTGTTTTTCAATTATTTTAAGATGATTTTGTTGTTTGTTTATAAATGTTTTTGTAATCCATGCTTTATTGACAATTAATTTTATGCTAGTTATTTTACAAGAAGTTCCAAGCAACGTATTTTCCTAAAGTTTATAAACGCATGCTAGTTACAAAGTTTATGAAGTATGCTTTGGTACAATGGTTGAACCATGGTAGTTCTCAAAAGAAGATTCTATGACTATGTTCATATTTTAAAGGAAGTTGCTTGA

mRNA sequence

ATGAATGCGACATGTTTCCTTGCAGTAGACGCCGCAAAGGCTGAAACTTTAAAACATATGTGGCCCGATGGCCAAATGCCAGGCGATCCTACTCTCGGCGGAGGTGACGATGCTTTCAACACCCTTTTTAGTGAAATCGGTGTTGGAAAGCATGTTCCTCATGTTGTTTTTGTTGATCTTGAGCCTATTGTTATCGATGAGGAAGTTGCTTGA

Coding sequence (CDS)

ATGAATGCGACATGTTTCCTTGCAGTAGACGCCGCAAAGGCTGAAACTTTAAAACATATGTGGCCCGATGGCCAAATGCCAGGCGATCCTACTCTCGGCGGAGGTGACGATGCTTTCAACACCCTTTTTAGTGAAATCGGTGTTGGAAAGCATGTTCCTCATGTTGTTTTTGTTGATCTTGAGCCTATTGTTATCGATGAGGAAGTTGCTTGA

Protein sequence

MNATCFLAVDAAKAETLKHMWPDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDEEVA

Homology

[Close]

BLAST of Bhi09G000645 vs. TAIR 10
Match: AT4G14960.1 (Tubulin/FtsZ family protein )

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-17
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. TAIR 10
Match: AT4G14960.2 (Tubulin/FtsZ family protein )

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-17
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. TAIR 10
Match: AT1G04820.1 (tubulin alpha-4 chain )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMP D T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. TAIR 10
Match: AT1G50010.1 (tubulin alpha-2 chain )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 37/46 (80.43%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMP D T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. TAIR 10
Match: AT5G19770.1 (tubulin alpha-3 )

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-13
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDG MP D T+G   DAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy Swiss-Prot
Match: P46259 (Tubulin alpha-1 chain OS=Pisum sativum OX=3888 GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy Swiss-Prot
Match: Q96460 (Tubulin alpha-2 chain OS=Hordeum vulgare OX=4513 GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy Swiss-Prot
Match: Q53M52 (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy Swiss-Prot
Match: Q9ZRR5 (Tubulin alpha-3 chain OS=Hordeum vulgare OX=4513 GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy Swiss-Prot
Match: P29511 (Tubulin alpha-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA6 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.8e-16
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy TrEMBL
Match: A0A0D9WT31 (Tubulin alpha chain OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-14
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDEEV 70
          PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDEE+
Sbjct: 32 PDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEEI 79

[Close]

BLAST of Bhi09G000645 vs. ExPASy TrEMBL
Match: A0A643C0F1 (Uncharacterized protein (Fragment) OS=Balaenoptera physalus OX=9770 GN=E2I00_000176 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 21  WPDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDEEV 70
           WP+GQMP D T+GGGDD+FNT FSE G GKHVP  VFVDLEP+VIDEE+
Sbjct: 74  WPNGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPMVIDEEI 122

[Close]

BLAST of Bhi09G000645 vs. ExPASy TrEMBL
Match: A0A287N4Z0 (Tubulin alpha chain OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.4e-14
Identity = 39/48 (81.25%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 20 MWPDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          M PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 1  MQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 48

[Close]

BLAST of Bhi09G000645 vs. ExPASy TrEMBL
Match: A0A5A7TSF5 (Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00370 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 39/46 (84.78%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 22 PDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          PDGQMPGD TLGGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 32 PDGQMPGDTTLGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

[Close]

BLAST of Bhi09G000645 vs. ExPASy TrEMBL
Match: A0A498JN76 (Tubulin alpha chain OS=Malus domestica OX=3750 GN=DVH24_007755 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-14
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 17 LKH-MWPDGQMPGDPTLGGGDDAFNTLFSEIGVGKHVPHVVFVDLEPIVIDE 68
          L+H + PDGQMPGD T+GGGDDAFNT FSE G GKHVP  VFVDLEP VIDE
Sbjct: 26 LEHGLQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDE 77

The following BLAST results are available for this feature:

BLAST of Bhi09G000645 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14960.1	4.1e-17	82.61	Tubulin/FtsZ family protein	[more]
AT4G14960.2	4.1e-17	82.61	Tubulin/FtsZ family protein	[more]
AT1G04820.1	2.0e-16	80.43	tubulin alpha-4 chain	[more]
AT1G50010.1	2.0e-16	80.43	tubulin alpha-2 chain	[more]
AT5G19770.1	2.8e-13	71.74	tubulin alpha-3	[more]

BLAST of Bhi09G000645 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46259	5.8e-16	82.61	Tubulin alpha-1 chain OS=Pisum sativum OX=3888 GN=TUBA1 PE=3 SV=1	[more]
Q96460	5.8e-16	82.61	Tubulin alpha-2 chain OS=Hordeum vulgare OX=4513 GN=TUBA2 PE=2 SV=1	[more]
Q53M52	5.8e-16	82.61	Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBA PE=2 SV=1	[more]
Q9ZRR5	5.8e-16	82.61	Tubulin alpha-3 chain OS=Hordeum vulgare OX=4513 GN=TUBA3 PE=2 SV=1	[more]
P29511	5.8e-16	82.61	Tubulin alpha-6 chain OS=Arabidopsis thaliana OX=3702 GN=TUBA6 PE=1 SV=1	[more]

BLAST of Bhi09G000645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D9WT31	2.5e-14	81.25	Tubulin alpha chain OS=Leersia perrieri OX=77586 PE=3 SV=1	[more]
A0A643C0F1	3.3e-14	75.51	Uncharacterized protein (Fragment) OS=Balaenoptera physalus OX=9770 GN=E2I00_000...	[more]
A0A287N4Z0	7.4e-14	81.25	Tubulin alpha chain OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
A0A5A7TSF5	9.6e-14	84.78	Tubulin alpha chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G...	[more]
A0A498JN76	9.6e-14	76.92	Tubulin alpha chain OS=Malus domestica OX=3750 GN=DVH24_007755 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	GENE3D	3.40.50.1440	Tubulin/FtsZ, GTPase domain	coord: 8..69 e-value: 4.6E-9 score: 38.1
IPR036525	Tubulin/FtsZ, GTPase domain superfamily	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 19..67
None	No IPR available	PANTHER	PTHR11588:SF391	TUBULIN ALPHA CHAIN	coord: 20..67
IPR000217	Tubulin	PANTHER	PTHR11588	TUBULIN	coord: 20..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000645	Bhi09M000645	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton