Bhi09G000494 (gene) Wax gourd (B227) v1

Overview
NameBhi09G000494
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionbox C/D snoRNA protein 1
Locationchr9: 12846633 .. 12846971 (+)
RNA-Seq ExpressionBhi09G000494
SyntenyBhi09G000494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTATCAACTTCAAGCCCACGTTGTGAAGTTGACCCCCAAAACCTGCATAATGCAACACATAATTACTCTACAGATTTGATGGGGAAGCAGGAAGTTGGGAATAGCCCCAATTCAAGCTCCCAGGCCAAGGAGATAGGGGTTGTGAAAGAATTCGAGTTTGATTTTGAGCAAGATCTGATAGATGCGTACTCAAATATCATGGCACAAATCAATCCAGATGATTTTCTTGATTGGGAAGGAGACTTTTCCAAGGGAGTGGAAATGGAAGGAAGTGGTGAACTTCTCGGGGATGCGTTCATGTTTGAAGAACTGGAGGGAGAGATTATGGAATAG

mRNA sequence

ATGAAAGTATCAACTTCAAGCCCACGTTGTGAAGTTGACCCCCAAAACCTGCATAATGCAACACATAATTACTCTACAGATTTGATGGGGAAGCAGGAAGTTGGGAATAGCCCCAATTCAAGCTCCCAGGCCAAGGAGATAGGGGTTGTGAAAGAATTCGAGTTTGATTTTGAGCAAGATCTGATAGATGCGTACTCAAATATCATGGCACAAATCAATCCAGATGATTTTCTTGATTGGGAAGGAGACTTTTCCAAGGGAGTGGAAATGGAAGGAAGTGGTGAACTTCTCGGGGATGCGTTCATGTTTGAAGAACTGGAGGGAGAGATTATGGAATAG

Coding sequence (CDS)

ATGAAAGTATCAACTTCAAGCCCACGTTGTGAAGTTGACCCCCAAAACCTGCATAATGCAACACATAATTACTCTACAGATTTGATGGGGAAGCAGGAAGTTGGGAATAGCCCCAATTCAAGCTCCCAGGCCAAGGAGATAGGGGTTGTGAAAGAATTCGAGTTTGATTTTGAGCAAGATCTGATAGATGCGTACTCAAATATCATGGCACAAATCAATCCAGATGATTTTCTTGATTGGGAAGGAGACTTTTCCAAGGGAGTGGAAATGGAAGGAAGTGGTGAACTTCTCGGGGATGCGTTCATGTTTGAAGAACTGGAGGGAGAGATTATGGAATAG

Protein sequence

MKVSTSSPRCEVDPQNLHNATHNYSTDLMGKQEVGNSPNSSSQAKEIGVVKEFEFDFEQDLIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGELLGDAFMFEELEGEIME
Homology
BLAST of Bhi09G000494 vs. TAIR 10
Match: AT1G04945.2 (HIT-type Zinc finger family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 36  NSPNSSSQAKEIGVVKEFEFDFEQDLIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGE 95
           N+ N      E       E +FEQ LID YS++ A++NP D+ ++E +F+KG++ + +  
Sbjct: 311 NNSNPQVDTTEQEDAGNMELEFEQGLIDTYSDLFAEMNPGDYFNFECEFAKGLDSDDNCN 370

Query: 96  L--LGDAFMFEEL---EGEIME 113
           L  L   F+ + L   EGEI+E
Sbjct: 371 LQNLDTDFIADGLDLEEGEIVE 392

BLAST of Bhi09G000494 vs. TAIR 10
Match: AT1G04945.3 (HIT-type Zinc finger family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-05
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 36  NSPNSSSQAKEIGVVKEFEFDFEQDLIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGE 95
           N+ N      E       E +FEQ LID YS++ A++NP D+ ++E +F+KG++ + +  
Sbjct: 563 NNSNPQVDTTEQEDAGNMELEFEQGLIDTYSDLFAEMNPGDYFNFECEFAKGLDSDDNCN 622

Query: 96  L--LGDAFMFEEL---EGEIME 113
           L  L   F+ + L   EGEI+E
Sbjct: 623 LQNLDTDFIADGLDLEEGEIVE 644

BLAST of Bhi09G000494 vs. ExPASy TrEMBL
Match: A0A0A0K6N1 (HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G429490 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.7e-44
Identity = 96/113 (84.96%), Postives = 102/113 (90.27%), Query Frame = 0

Query: 1   MKVSTSSPRCEVDPQNLHNATHNYSTDLMGKQEVGNSPNSSSQAKEIGVVKEFEFDFEQD 60
           MKVSTSSP C+V P+NLH ATH+YST L+GKQEVGNSP SSSQA+E GVVKE EFDFEQD
Sbjct: 306 MKVSTSSPHCKVSPRNLHGATHSYSTGLVGKQEVGNSPKSSSQAREPGVVKELEFDFEQD 365

Query: 61  LIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGELLGDAFMFEEL-EGEIME 113
           LIDAYSNIMAQINPDDFLDW+GDFSK VEMEGSGELLGDAF  EEL EGEIME
Sbjct: 366 LIDAYSNIMAQINPDDFLDWDGDFSKEVEMEGSGELLGDAFTVEELEEGEIME 418

BLAST of Bhi09G000494 vs. ExPASy TrEMBL
Match: A0A6J1KUW8 (box C/D snoRNA protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111497820 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 92/113 (81.42%), Postives = 100/113 (88.50%), Query Frame = 0

Query: 1   MKVSTSSPRCEVDPQNLHNATHNYSTDLMGKQEVGNSPNSSSQAKEIGVVKEFEFDFEQD 60
           MK S SSP CEV+PQN+  ATHNYSTDLMGK EVGNSPNSSSQAKE+GV+KE EFDFEQD
Sbjct: 311 MKASNSSPYCEVEPQNVLGATHNYSTDLMGKHEVGNSPNSSSQAKELGVLKELEFDFEQD 370

Query: 61  LIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGELLGDAFMFEEL-EGEIME 113
           L+D YSNIMAQINPDDFLDW+ DFSKGVEMEGSG+LLGD F  +EL EGEIME
Sbjct: 371 LMDTYSNIMAQINPDDFLDWDEDFSKGVEMEGSGDLLGDVFTVDELEEGEIME 423

BLAST of Bhi09G000494 vs. ExPASy TrEMBL
Match: A0A6J1DKM0 (box C/D snoRNA protein 1 OS=Momordica charantia OX=3673 GN=LOC111021953 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 92/113 (81.42%), Postives = 100/113 (88.50%), Query Frame = 0

Query: 1   MKVSTSSPRCEVDPQNLHNATHNYSTDLMGKQEVGNSPNSSSQAKEIGVVKEFEFDFEQD 60
           MKVSTSSPRCEV+PQNLH AT+N+S DLM   EV NSPNSSSQAKE+GV+KE EFDFEQD
Sbjct: 305 MKVSTSSPRCEVEPQNLHGATYNHSADLMEDHEVRNSPNSSSQAKEVGVLKELEFDFEQD 364

Query: 61  LIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGELLGDAFMFEEL-EGEIME 113
           LID YSNIMAQINPDDFLDWEGDFSKGVEMEG+ +LLGD F  EEL EGEI+E
Sbjct: 365 LIDTYSNIMAQINPDDFLDWEGDFSKGVEMEGTADLLGDVFTVEELEEGEILE 417

BLAST of Bhi09G000494 vs. ExPASy TrEMBL
Match: A0A6J1H4S8 (box C/D snoRNA protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460580 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.2e-43
Identity = 92/113 (81.42%), Postives = 99/113 (87.61%), Query Frame = 0

Query: 1   MKVSTSSPRCEVDPQNLHNATHNYSTDLMGKQEVGNSPNSSSQAKEIGVVKEFEFDFEQD 60
           MK S SSP CEV+PQN+  ATHNYSTDLMGK EVGNSPNSSSQAKE+GV KE EFDFEQD
Sbjct: 311 MKASNSSPHCEVEPQNVLGATHNYSTDLMGKHEVGNSPNSSSQAKELGVHKELEFDFEQD 370

Query: 61  LIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGELLGDAFMFEEL-EGEIME 113
           L+D YSNIMAQINPDDFLDW+ DFSKGVEMEGSG+LLGD F  +EL EGEIME
Sbjct: 371 LMDTYSNIMAQINPDDFLDWDEDFSKGVEMEGSGDLLGDVFTVDELEEGEIME 423

BLAST of Bhi09G000494 vs. ExPASy TrEMBL
Match: A0A5D3CJA8 (Box C/D snoRNA protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001150 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.0e-38
Identity = 89/113 (78.76%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 1   MKVSTSSPRCEVDPQNLHNATHNYSTDLMGKQEVGNSPNSSSQAKEIGVVKEFEFDFEQD 60
           MKVSTSSP C+V P+N           L+GKQEVGNSP SSSQA+E+GVVKE EFDFEQD
Sbjct: 299 MKVSTSSPHCKVSPRN-----------LVGKQEVGNSPKSSSQARELGVVKELEFDFEQD 358

Query: 61  LIDAYSNIMAQINPDDFLDWEGDFSKGVEMEGSGELLGDAFMFEEL-EGEIME 113
           LIDAYSNIMAQINPDDFLDWEGDFSK VEMEGSGELLGDAF  EEL EGEIME
Sbjct: 359 LIDAYSNIMAQINPDDFLDWEGDFSKEVEMEGSGELLGDAFTAEELEEGEIME 400

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G04945.21.2e-0535.37HIT-type Zinc finger family protein [more]
AT1G04945.31.2e-0535.37HIT-type Zinc finger family protein [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6N11.7e-4484.96HIT-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G429490 PE... [more]
A0A6J1KUW82.4e-4381.42box C/D snoRNA protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111497820 PE=4 SV=1[more]
A0A6J1DKM04.2e-4381.42box C/D snoRNA protein 1 OS=Momordica charantia OX=3673 GN=LOC111021953 PE=4 SV=... [more]
A0A6J1H4S84.2e-4381.42box C/D snoRNA protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460580 PE=4... [more]
A0A5D3CJA89.0e-3878.76Box C/D snoRNA protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000494Bhi09M000494mRNA