Bhi09G000315 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000315
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	chr9: 7998716 .. 8003200 (+)
RNA-Seq Expression	Bhi09G000315
Synteny	Bhi09G000315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGCAAACTAGAATATATTCCTATATACGTATTTCCCGCTCGAGTTAGAACGAAACACAGAACACAGTAGAACCTAGACTCCGCCGTGCTCGGAGTTAATTCCGTTCCGATTTCCACCGATCTCCGCTGTTAACTCCACCGGCAATTCGCCGATGGCTCACCAGCCCTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGTTAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGTGGCAACCAGGTTTCTTTCGTTTCCTTTTCTCTCCCCTTTCTCTCCGTTTTGGCCGTAGAACGCTATTGTTTAACGAGGAATAGGAAGAGGAAATAGAGAAATGCAGAAAAGATGGGACAATTTTTAGGTATGAGTTTAATTGAGTATTGTTTGGAAATGTAAGAGAGGATGCTCTTGACGCTAGGTTTTAATTTGTGATTCTAGCAGTTTTCAGTCGTCTCGAATTTGGATAGAATACAAAAGGATTTGGGATTTTGAGCATCGTCTGAGTTTTTTGTACGACGAGAAAGCCTAATTTTCTTCAATTTGTATGAAGAACATTTACTACTTTGTTACTTCAAAGGAAATCAGTTGTCCTGCCATTCTTTTAGGTTTTGAGATATTACATATCAAATTGGTTGCCGTTTTCAAACAGGTCCTTTTGTTTTCACAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTACATGCATTAAATGTAAGATCATGTATTGCAGATAGTTCCATACTTGAGTCTGATTTCTAATTCGTTGTGGAGCTTAGTTGATTTTGTTTATTTTTCTTTTACATGTTGCATTCTGTTTCCCTAGCAGGTTCTGATAGTAGAATTTTGGTCCGTATTGTCAATTTTTAATGTTGAAACATAACGGTGGTGCTGTATCAGGGCGTCAAATTTGATCCACAAAGTGGATCGGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGTGAGGGCTTCAAGATATGGATTTCCTGCTAGAGTCAAGTTATTATGCTAAGATGATCCACTTGTTGTGATCGCTATCCAATGTTGCCCTATACAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATGTTTTCACTCTCTAATATATAACATTTGTTTCTAGTATCATATCTATCTCCTACGTGTTTGAAATGTAATTTTCATGTTAACGTCTGTCTTCTCTCGTATTCATTATGTGGATTTGTATTATCTTTTTGCTTCCCTTTTTTTACATTTCACTTGCATATTTGCTGCCACACAATCTGAAATTTGAGGCTCACGTGCATATTTGATGTACTGATATATATTCAGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGGTTCGAAAAGCATTAAATAAAAGTTTAATTACTCTCCACTATAATATTAGAAGATGTAGCATCACTGGATATCAAATTGAAATGTTATTAATTTCTTGCAAACTGAGTTTATTCTTTTCTAAACAATGCAGTGGTGAGGCTTTGGTGACTCCTGCTAATGCTCTATCTGCTCCATATGTACGTCAATCTATCTTCATTGTTAGGATTTAGGAACTATCCATACAAGAATCAAGAATGCAATCTAATTTTGTATTGTAATGTAAAAGTAGATATTTTTTCTGTGTAGCTGGTAGCCTAATCTAGTCAACATGTGTTTCTGCCAATTCTGTATGCAGTTTATTATTTTTGAAGTTTTGAAAATTTGATTTTTGAATTTTAATGTTTGCCCAAAAATGAATAAGGTGATAGGTATTTAGCAGAAAATTGTTCGATGCTAATTTCAAAGTCGAGATTTTGTAAAAATTTCCTCTTTCAAATTATTGATTGCTTGTTATTAGGGTTTTACCATGCGATACAATATGGTCTTTATTTTATGTTTGATTGGTGCAGGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAGTGAGTTATACTCTACTCGCTCAGTGGTTATGTAACAACCTTTAGTGAGATTCGTGAATTGTGATAAAGTTAATTGGTGTCTTATTCTCTCCTTTTCCGTGTTCACGATTCTTATTTCAGCAAGGCATTGAAATGATTGTATTACTTGGTTTGATTATGTTAACTTCTTATTGTTAAAACTTTATGAACTATTTCTCTAAACCATTATTAGTTTTACTTGTATTTTGCCCACCACATAATAAAATTGGTTTGCAAAAACTTAAGACGAGATTTTTTTAGAAACAACTTAGATGAGATATCTGTAGACATATTTTGGGGTGATTGGACCATTCCATCTGCCTGTGATGAACTATTTCTTACGTCTCAGACCTAAATTATTCTTCTAGTTTTAAGTACCAAGAAAAATGCTATACGCTGATAGGAGTTTTGTTGTGCCATTGCAGTATATCAAAACAATGAAAATGAAGTAAAAAAAAAATATTGTTTATGATAGAAGTTTTATGGTCACATTTTTACAATGCTAGATATCCTGGATTTAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGTATGCAAGATTGCTTCAGGGAATTGTTGAGCTTTTATTATGCTCCAATTGTTCCTTACTCATGGCCAAACATACTCCATTTTGAATTACAAGCACTGGTATGAGGATGAGTGGATTGCATTACCTTCATTCTTCACTAAACCTAGTATTTGATCATATTATTAAGACTAAGATTTTTTTTTTTGTATATGCAATTTTTTTTTCTCTAAATAATATAAACTACTATGTTACCATTGGGGATAAATCTTGCTTTAAATATATATAGATATATATTTGGAAGGAAAAATTTTGCTTCCAAAATTATTTCTTGTTTTTGTTTTTCTTATTATAGCATCATGCTTTATTTTTTTGAGCACTCTCAAATATTCTAATTGATGAGGTTCATCTTGAAATATGACTTTGTTTACCTGATTGTCTTGTTCCAGGATATCGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGAAGCGTGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATTTCTATTTGAATTACTTCTCTATCGTAATTGCTAACTTCAGCATATGATGAGTAATTGATTGATCTCGCATGTTATTTTCTAGGTATGCTCGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCGTTCATCAGTCTGGTAGGGACTCGTTTGCTCCTACCCTGAAATGTTTTGTTGCATTAATCAGTCTGGTATTGTTTCTAGTGTTTGCAAACTACACTTCATATCACTGCCTAAATAATGAAAATAGGCTATGTGGTCATGCACATTTTAATTAAATTATAAAGCAAAGTATTGTAAAGTGTTGGTCGACGTTTTTTTTCTTTTTCTTTTTCTTTCTTTTTAATAAAAAAAATAGTTTGAAGAAGGCTATTGCTATGCAGTAGGTAGTTAATCTCGTAGTGGAAGTGCTATGAGAAGCTTTGCTAGGAGAACCAGGATCTGACTTTAGCTGTGTTAGTCCGAAAAAAAAAGGATGTAGCTAGTCATTAGATAGTAATTGGACAATATTTTTATTTCTCCGATTGAAATAACTATGACGGATATGTCTCACTAATGATAGCTCCAATTAGTTAAGACATTTGCCTTTGATCAAGAGATTGGAGGTTCAAGTTTCCCACTCTCACTAATTGAACTCAAACTGCCAAAGTTGGCTTGTGAGTGGATGACATGCATCCACGTCTACTCCATCACACCTAACTGAAAAATTACGACCTACACAAATCAGTAACTTTGTATTCACCTAAAGGATTTGAGTGTTTTTCATTTGGAAGTAGTAATCGTTAGTGAATCTTGCTGCAATACTCCGTTAACAATCATGTTACAAACTTCCCTGCTAATGGAAAATCCGGTTCTAGAATTTCAATTCTACTAGGATTTCCAAGGCTATTTAGGTAGGACCTTCATCATCTCCATGAAGAAATTTTTATACATCCTTATCGGGTGACTCCTCACCAAATTCATAATCGTTCTTACATCCTCTACTTAGGGCACTCGTTTCCATCAGGGCGTTCACTCGGATTGATGCCCTCGTCGATTGCATTTGTACCTCTTGATTGGAGTTGGCTTAACATAAGAATCACAAAATTTCCCCCTTTCAACAAGTAGGCATGGATTCACCCTTTTAACTTTTGATCTAGAATATAATTTGTTGTGTTGATTTCATTGCTGAAAACTGTGGCAGC

mRNA sequence

TTAGCAAACTAGAATATATTCCTATATACGTATTTCCCGCTCGAGTTAGAACGAAACACAGAACACAGTAGAACCTAGACTCCGCCGTGCTCGGAGTTAATTCCGTTCCGATTTCCACCGATCTCCGCTGTTAACTCCACCGGCAATTCGCCGATGGCTCACCAGCCCTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGTTAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGTGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTACATGCATTAAATGGCGTCAAATTTGATCCACAAAGTGGATCGGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGTGGTGAGGCTTTGGTGACTCCTGCTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAATATCCTGGATTTAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGATATCGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGAAGCGTGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCGTTCATCAGTCTGGGCACTCGTTTCCATCAGGGCGTTCACTCGGATTGATGCCCTCGTCGATTGCATTTGTACCTCTTGATTGGAGTTGGCTTAACATAAGAATCACAAAATTTCCCCCTTTCAACAAGTAGGCATGGATTCACCCTTTTAACTTTTGATCTAGAATATAATTTGTTGTGTTGATTTCATTGCTGAAAACTGTGGCAGC

Coding sequence (CDS)

ATGGCTCACCAGCCCTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGACGTTAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGTGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTACATGCATTAAATGGCGTCAAATTTGATCCACAAAGTGGATCGGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAACATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGTGGTGAGGCTTTGGTGACTCCTGCTAATGCTCTATCTGCTCCATATGAGCATCATGAAAAGAATGATGGAGGACCATGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTGCAAATATCCTGGATTTAACGTTCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGATATCGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGAAGCGTGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAG

Protein sequence

MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS

Homology

[Close]

BLAST of Bhi09G000315 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 322.4 bits (825), Expect = 3.4e-88
Identity = 173/283 (61.13%), Postives = 208/283 (73.50%), Query Frame = 0


Query: 3   HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHK 122
           +SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +
Sbjct: 64  ESCQLKYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKER 123

Query: 123 PGGGAYVVIDKRKKTDANSQETSSDDGGSEPDE---------PSKKAEQSGEALVTPANA 182
           PG G YVVID R K  + SQ+  SD+G S+PDE         P +      EA   P + 
Sbjct: 124 PGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSK 183

Query: 183 LSAPYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMP 242
             +   H EK ++GG     CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMP
Sbjct: 184 APSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP 243

Query: 243 VAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRK 262
           VAFADFE+IEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Sbjct: 244 VAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEYARSKMRK 286

[Close]

BLAST of Bhi09G000315 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 296.2 bits (757), Expect = 2.6e-80
Identity = 165/293 (56.31%), Postives = 200/293 (68.26%), Query Frame = 0


Query: 3   HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQ------------------VVAFATFYNHQSAVTALHALNGVKFDPQS 122
           +SCQLKYTGRG+Q                  VVAFATF +H+ A+ A++ LNGVKFDPQ+
Sbjct: 64  ESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQT 123

Query: 123 GSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGGSEPDE--------- 182
           GS LHIELARSNSRRK +PG G YVVID R K  + SQ+  SD+G S+PDE         
Sbjct: 124 GSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDS 183

Query: 183 PSKKAEQSGEALVTPANALSAPYEHHEK-NDGG----PCSTLFIANLGPNCNEDELKEVL 242
           P +      EA   P +   +   H EK ++GG     CSTLFIANLGPNC EDELK++L
Sbjct: 184 PKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLL 243

Query: 243 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIE 254
            +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQG++L SSDRGGMHIE
Sbjct: 244 SRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 296

[Close]

BLAST of Bhi09G000315 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-40
Identity = 102/266 (38.35%), Postives = 145/266 (54.51%), Query Frame = 0


Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPAN-------ALSAPYEHHEKN 181
            K K     S  T+++ G      P   +        +PA        A  AP       
Sbjct: 152 KKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSK 211

Query: 182 DGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVM 241
              PC TLFIAN+GPNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +
Sbjct: 212 AADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEAL 271

Query: 242 EELQGSVLPSSDRGG-MHIEYARSKM 260
             LQG+VL SS  G  + ++YARS+M
Sbjct: 272 HTLQGTVLYSSLTGEVLRLQYARSRM 285

[Close]

BLAST of Bhi09G000315 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-38
Identity = 101/267 (37.83%), Postives = 142/267 (53.18%), Query Frame = 0


Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPAN-------ALSAPYEHHEKN 181
            K K     S  T+++ G      P   +        +PA        A  AP       
Sbjct: 152 KKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSK 211

Query: 182 DGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVM 241
              PC TLFIAN+GPNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +
Sbjct: 212 AADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEAL 271

Query: 242 EELQGSVLPSSDRGGMHIEYARSKMRK 262
             LQG+VL SS  G +    +R  MRK
Sbjct: 272 HTLQGTVLYSSLTGEVLRLQSRMGMRK 286

[Close]

BLAST of Bhi09G000315 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.5e-38
Identity = 97/254 (38.19%), Postives = 136/254 (53.54%), Query Frame = 0


Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+ + 
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SS 91

Query: 62  RGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI 121
            G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Sbjct: 92  DGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL 151

Query: 122 DKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPAN-------ALSAPYEHHEKN 181
            K K     S  T+++ G      P   +        +PA        A  AP       
Sbjct: 152 KKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSK 211

Query: 182 DGGPCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVM 241
              PC TLFIAN+GPNC E EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +
Sbjct: 212 AADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEAL 271

Query: 242 EELQGSVLPSSDRG 249
             LQG+VL SS  G
Sbjct: 272 HTLQGTVLYSSLTG 273

[Close]

BLAST of Bhi09G000315 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-13
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   A  A +A
Sbjct: 19  VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 78

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 79  LNGIRFDPENPQTLRLEFAKANTK 100

[Close]

BLAST of Bhi09G000315 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATF 72
           ++ + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF
Sbjct: 7   SETNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTF 66

Query: 73  YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
            +   A  A +ALNG++FDP+S   L +E A++N++
Sbjct: 67  DSRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTK 100

[Close]

BLAST of Bhi09G000315 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +A
Sbjct: 21  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 80

Query: 85  LNGVKFDPQSGSVLHIELARSNSR 109
           LNG++FDP++   L +E A++N++
Sbjct: 81  LNGIRFDPENPQTLRLEFAKANTK 102

[Close]

BLAST of Bhi09G000315 vs. ExPASy Swiss-Prot
Match: Q93062 (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-12
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATF 72
           N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F
Sbjct: 11  NTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSF 70

Query: 73  YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
            +   A  A +ALNG++FDP+    L +E A++N++
Sbjct: 71  DSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTK 104

[Close]

BLAST of Bhi09G000315 vs. ExPASy Swiss-Prot
Match: Q9WVB0 (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-12
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATF 72
           N P         + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F +F
Sbjct: 11  NTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSF 70

Query: 73  YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 109
            +   A  A +ALNG++FDP+    L +E A++N++
Sbjct: 71  DSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTK 104

[Close]

BLAST of Bhi09G000315 vs. ExPASy TrEMBL
Match: A0A5A7V0X3 (Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 4.0e-145
Identity = 256/262 (97.71%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDGGSEPDEPSKKA+QS EA+VTPA+A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 263
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Bhi09G000315 vs. ExPASy TrEMBL
Match: A0A0A0K772 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.2e-145
Identity = 256/262 (97.71%), Postives = 260/262 (99.24%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHLPYDPYYLYNQPDPTYSERSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKKTDANSQETSSDDGGSEPDEPSKKA+QS EA+VTPANA+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPANAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 263
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Bhi09G000315 vs. ExPASy TrEMBL
Match: A0A1S3CHB2 (LOW QUALITY PROTEIN: protein WHI4 OS=Cucumis melo OX=3656 GN=LOC103500737 PE=4 SV=1)

HSP 1 Score: 518.8 bits (1335), Expect = 1.3e-143
Identity = 254/262 (96.95%), Postives = 258/262 (98.47%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK  ANSQETSSDDGGSEPDEPSKKA+QS EA+VTPA+A+SAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKPXANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 263
           VLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Bhi09G000315 vs. ExPASy TrEMBL
Match: A0A6J1HI97 (protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138
Identity = 244/262 (93.13%), Postives = 254/262 (96.95%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK+D+N+QETSS+DGGSEPDEPSKK EQS EA+V P N LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 263
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of Bhi09G000315 vs. ExPASy TrEMBL
Match: A0A6J1KI66 (U2 small nuclear ribonucleoprotein B'' 2 OS=Cucurbita maxima OX=3661 GN=LOC111494642 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 8.0e-138
Identity = 244/262 (93.13%), Postives = 253/262 (96.56%), Query Frame = 0


Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQ YDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQTYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCS 180
           IDKRKK+D+N+QETSS+DGGSEPDEPSKK EQS EA+V P N LSAPYEHHEKNDGGPCS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240
           TLFIANLGPNCNEDELKEVL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 241 VLPSSDRGGMHIEYARSKMRKS 263
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

The following BLAST results are available for this feature:

BLAST of Bhi09G000315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13700.2	3.4e-88	61.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	2.6e-80	56.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	3.4e-40	38.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	1.1e-38	37.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	5.5e-38	38.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Bhi09G000315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9YGP5	3.5e-13	42.86	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q6DH13	4.5e-13	38.54	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	1.3e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q93062	2.3e-12	37.50	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1...	[more]
Q9WVB0	2.3e-12	37.50	RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=...	[more]

BLAST of Bhi09G000315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0X3	4.0e-145	97.71	Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 P...	[more]
A0A0A0K772	5.2e-145	97.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1	[more]
A0A1S3CHB2	1.3e-143	96.95	LOW QUALITY PROTEIN: protein WHI4 OS=Cucumis melo OX=3656 GN=LOC103500737 PE=4 S...	[more]
A0A6J1HI97	2.1e-138	93.13	protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1	[more]
A0A6J1KI66	8.0e-138	93.13	U2 small nuclear ribonucleoprotein B'' 2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 27..101 e-value: 1.0E-5 score: 35.0 coord: 181..253 e-value: 2.7E-8 score: 43.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 182..244 e-value: 5.8E-10 score: 38.9 coord: 28..91 e-value: 3.2E-7 score: 30.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 26..105 score: 11.622288
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 180..257 score: 11.622288
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 21..109 e-value: 3.3E-21 score: 77.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 172..262 e-value: 5.1E-19 score: 70.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..157
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 8..251
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 8..251
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 26..101 e-value: 7.81583E-31 score: 108.126
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 178..256 e-value: 1.64056E-43 score: 140.417
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 26..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000315	Bhi09M000315	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding