Bhi09G000244 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000244
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein TAR1
Location	chr9: 6535229 .. 6535925 (+)
RNA-Seq Expression	Bhi09G000244
Synteny	Bhi09G000244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCGTTCTGTGTCTTAATCGACCAACACCCTTTGTGGATCTAGGTTAGCGCGCAGTTAGGCACCGTAACCCGGCTTCGGTTCATCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGCGCGGCTCAACAAGCAAGCCACGCGTCCTACCTATTTAAGTGTTGAGAATAAGTCTGAGGGCGTTGCGCCCCGATGCCTCTAATCATTGGCTTTACCCATAGAAATGCCCGCGGGCTCCAGCTATCCTGAGGGAAACTTCGGAGGAACCAGCTACTAGACGGTTTGATTAGTCTTTCGCCCCTATACCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGTCGGTGGTGCAACCACGAGGGGATCCCACCAGTCAGCTTCCTTGCCCTTACGGGTTTACTCGCCCGTTAACTGCACACATGTCAGACTCCTTTGTCCGTGTTTCAAGACGGGTCGAATGGAGGCCCAAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCGAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGATCTCCACAGGCGTAA

mRNA sequence

ATGACCACCGTTCTGTGTCTTAATCGACCAACACCCTTTGTGGATCTAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGTCGGTGGTGCAACCACGAGGGGATCCCACCAGTCAGCTTCCTTGCCCTTACGGGTTTACTCGCCCGTTAACTGCACACATGTCAGACTCCTTTGTCCGTGTTTCAAGACGGGTCGAATGGAGGCCCAAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCGAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGATCTCCACAGGCGTAA

Coding sequence (CDS)

ATGACCACCGTTCTGTGTCTTAATCGACCAACACCCTTTGTGGATCTAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGTCGGTGGTGCAACCACGAGGGGATCCCACCAGTCAGCTTCCTTGCCCTTACGGGTTTACTCGCCCGTTAACTGCACACATGTCAGACTCCTTTGTCCGTGTTTCAAGACGGGTCGAATGGAGGCCCAAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCGAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGATCTCCACAGGCGTAA

Protein sequence

MTTVLCLNRPTPFVDLDERFARQYRCGPPPEVSSGFAPLRHSSPSFGSDRHAHTRTLLRRSRSSVVQPRGDPTSQLPCPYGFTRPLTAHMSDSFVRVSRRVEWRPKADARSAQMPKPAEGARCQPRSGRRSPQA

Homology

[Close]

BLAST of Bhi09G000244 vs. ExPASy TrEMBL
Match: A0A6N2L4U0 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS166521 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.8e-19
Identity = 66/115 (57.39%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 12  PFVDLDERFARQYRCGPPPE---VSSGFAPLRHSSPSFGSDRHAHTRTLLRRSRS-SVVQ 71
           P    DERFARQYRCGPPPE    S     + H S   G DRHA TRTLLRRSRS     
Sbjct: 450 PIPKSDERFARQYRCGPPPEFPLASPRSGIVHHLS---GPDRHALTRTLLRRSRSVGGAT 509

Query: 72  PRGDPTSQLPCPYGFTRPLTAHMSDSFVRVSRRVEWRPKADARSAQMPKPAEGAR 123
             G P      PYGFTRP  AHMSDS VRVSRR    P+ADARSA +P  A  AR
Sbjct: 510 LEGIPPVSFLAPYGFTRPGLAHMSDSLVRVSRRTNGSPQADARSAHVPGHAVTAR 561

[Close]

BLAST of Bhi09G000244 vs. ExPASy TrEMBL
Match: A0A2G2UXD0 (Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_34971 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 65/122 (53.28%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 16  LDERFARQYRCGPPPE---VSSGFAPLRHSSPSFGSDRHAHTRTLLRRSRSSVVQPRGD- 75
           LDERFARQYRCGPPPE    S     + H S   G DR+AHTRTLLRRSRS    P G  
Sbjct: 111 LDERFARQYRCGPPPEFPLASPRSGIVHHLS---GPDRYAHTRTLLRRSRSVGGAPLGGI 170

Query: 76  PTSQLPCPYGFTRPLT---AHMSDSFVRVSRRVEWRPKADARSAQMPKPAEGARCQPRSG 131
           P      PYGFTRPLT     +     +  R     P+A  RSAQMPK A GARC P+S 
Sbjct: 171 PPISFLAPYGFTRPLTRTHVRLLGPCFKTGRM--GSPQASVRSAQMPKHAGGARCLPQSR 227

[Close]

BLAST of Bhi09G000244 vs. ExPASy TrEMBL
Match: A0A2G2UYA9 (Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_34759 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-16
Identity = 64/121 (52.89%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 17  DERFARQYRCGPPPE---VSSGFAPLRHSSPSFGSDRHAHTRTLLRRSRSSVVQPRGD-P 76
           DERFARQYRCGPPPE    S     + H S   G DR+AHTRTLLRRSRS    P G  P
Sbjct: 5   DERFARQYRCGPPPEFPLASPRSGIVHHLS---GPDRYAHTRTLLRRSRSVGGAPLGGIP 64

Query: 77  TSQLPCPYGFTRPLT---AHMSDSFVRVSRRVEWRPKADARSAQMPKPAEGARCQPRSGR 131
                 PYGFTRPLT     +     +  R     P+A  RSAQMPK A GARC P+S R
Sbjct: 65  PISFLAPYGFTRPLTRTHVRLLGPCFKTGRM--GSPQASVRSAQMPKHAGGARCLPQSRR 120

[Close]

BLAST of Bhi09G000244 vs. ExPASy TrEMBL
Match: A0A2G3AST1 (Protein TAR1 OS=Capsicum chinense OX=80379 GN=BC332_33786 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.2e-16
Identity = 64/121 (52.89%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 17  DERFARQYRCGPPPE---VSSGFAPLRHSSPSFGSDRHAHTRTLLRRSRSSVVQPRGD-P 76
           DERFARQYRCGPPPE    S     + H S   G DR+AHTRTLLRRSRS    P G  P
Sbjct: 352 DERFARQYRCGPPPEFPLASPRSGIVHHLS---GPDRYAHTRTLLRRSRSVGGAPLGGIP 411

Query: 77  TSQLPCPYGFTRPLT---AHMSDSFVRVSRRVEWRPKADARSAQMPKPAEGARCQPRSGR 131
                 PYGFTRPLT     +     +  R     P+A  RSAQMPK A GARC P+S R
Sbjct: 412 PISFLAPYGFTRPLTRTHVRLLGPCFKTGRM--GSPQASVRSAQMPKHAGGARCLPQSRR 467

[Close]

BLAST of Bhi09G000244 vs. ExPASy TrEMBL
Match: A0A2G3AS85 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_33986 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 62/120 (51.67%), Postives = 72/120 (60.00%), Query Frame = 0


Query: 17  DERFARQYRCGPPPE--VSSGFAPLRHSSPSFGSDRHAHTRTLLRRSRSSVVQPRGD-PT 76
           DERFARQYRCGPPPE  ++S  + + H     G DR+AHTRTLL+RSRS    P G  P 
Sbjct: 5   DERFARQYRCGPPPEFPLASPRSGIGHHLS--GPDRYAHTRTLLKRSRSVAGAPLGGIPP 64

Query: 77  SQLPCPYGFTRPLT---AHMSDSFVRVSRRVEWRPKADARSAQMPKPAEGARCQPRSGRR 131
                PYGFTRPLT     +     +  R     P+A  RSAQMPK A GARC P+S RR
Sbjct: 65  ISFLMPYGFTRPLTRTHVRLLGPCFKTGRM--GSPQASIRSAQMPKHAGGARCLPQSRRR 120

The following BLAST results are available for this feature:

BLAST of Bhi09G000244 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000244 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2L4U0	3.8e-19	57.39	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS1665...	[more]
A0A2G2UXD0	1.8e-16	53.28	Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_34971 PE=4 SV=1	[more]
A0A2G2UYA9	5.2e-16	52.89	Protein TAR1 OS=Capsicum baccatum OX=33114 GN=CQW23_34759 PE=4 SV=1	[more]
A0A2G3AST1	5.2e-16	52.89	Protein TAR1 OS=Capsicum chinense OX=80379 GN=BC332_33786 PE=4 SV=1	[more]
A0A2G3AS85	1.5e-15	51.67	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_33986 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..134
None	No IPR available	PANTHER	PTHR33047	PROTEIN TAR1	coord: 10..123
None	No IPR available	PANTHER	PTHR33047:SF19	SENESCENCE-ASSOCIATED PROTEIN	coord: 10..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000244	Bhi09M000244	mRNA