Bhi09G000233 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000233
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	chr9: 6406248 .. 6406484 (-)
RNA-Seq Expression	Bhi09G000233
Synteny	Bhi09G000233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTCAAGACCTTTGGATTTCTTCCATCTGGTGGAAAAGTGGCTATTTTGAGAGGGCCAATGAACTTGCACTTGGCTTACTAACTATACCTGGTGTCGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCTGTGAGGATAGTAAATGGAGTCCCAAACTAGCTGTTGCTTGTGAAGTATGA

mRNA sequence

ATGGCAATTCAAGACCTTTGGATTTCTTCCATCTGGTGGAAAAGTGGCTATTTTGAGAGGGCCAATGAACTTGCACTTGGCTTACTAACTATACCTGGTGTCGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCTGTGAGGATAGTAAATGGAGTCCCAAACTAGCTGTTGCTTGTGAAGTATGA

Coding sequence (CDS)

ATGGCAATTCAAGACCTTTGGATTTCTTCCATCTGGTGGAAAAGTGGCTATTTTGAGAGGGCCAATGAACTTGCACTTGGCTTACTAACTATACCTGGTGTCGTAGCTAATCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTAATGAAATTATCTGTGAGGATAGTAAATGGAGTCCCAAACTAGCTGTTGCTTGTGAAGTATGA

Protein sequence

MAIQDLWISSIWWKSGYFERANELALGLLTIPGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV

Homology

[Close]

BLAST of Bhi09G000233 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-16
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLA EGNEII E  KWSP+LA ACEV
Sbjct: 415 PGAVANRVALEACVQARNEGRDLAVEGNEIIREACKWSPELAAACEV 461

[Close]

BLAST of Bhi09G000233 vs. ExPASy Swiss-Prot
Match: Q31827 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aesculus pavia OX=43872 GN=rbcL PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEII E SKWSP+LA ACEV
Sbjct: 406 PGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEV 452

[Close]

BLAST of Bhi09G000233 vs. ExPASy Swiss-Prot
Match: Q07209 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Ailanthus altissima OX=23810 GN=rbcL PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEII E SKWSP+LA ACEV
Sbjct: 405 PGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEV 451

[Close]

BLAST of Bhi09G000233 vs. ExPASy Swiss-Prot
Match: Q31730 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bauera rubioides OX=23051 GN=rbcL PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEII E SKWSP+LA ACEV
Sbjct: 405 PGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEV 451

[Close]

BLAST of Bhi09G000233 vs. ExPASy Swiss-Prot
Match: P36481 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Berzelia lanuginosa OX=28530 GN=rbcL PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEII E SKWSP+LA ACEV
Sbjct: 406 PGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEV 452

[Close]

BLAST of Bhi09G000233 vs. ExPASy Swiss-Prot
Match: O19872 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bixa orellana OX=66672 GN=rbcL PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEII E SKWSP+LA ACEV
Sbjct: 406 PGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEV 452

[Close]

BLAST of Bhi09G000233 vs. ExPASy TrEMBL
Match: Q95B27 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Prunus mume OX=102107 GN=rbcL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEIICE SKWSP+LA ACEV
Sbjct: 405 PGAVANRVALEACVQARNEGRDLAREGNEIICEASKWSPELAAACEV 451

[Close]

BLAST of Bhi09G000233 vs. ExPASy TrEMBL
Match: A0A1B1QBL0 (Ribulose bisphosphate carboxylase large chain OS=Cephalanthera humilis OX=1158208 GN=rbcL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEIICE SKWSP+LA ACEV
Sbjct: 422 PGAVANRVALEACVQARNEGRDLAREGNEIICEASKWSPELAAACEV 468

[Close]

BLAST of Bhi09G000233 vs. ExPASy TrEMBL
Match: A0A7J7NE37 (Ribulose bisphosphate carboxylase large chain OS=Kingdonia uniflora OX=39325 GN=GIB67_017927 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.7e-15
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG +ANRVALEACVQARNEGRDLAREGNEIICE  KWSP+LA ACEV
Sbjct: 201 PGAIANRVALEACVQARNEGRDLAREGNEIICEACKWSPELAAACEV 247

[Close]

BLAST of Bhi09G000233 vs. ExPASy TrEMBL
Match: B9SD19 (Ribulose bisphosphate carboxylase large chain OS=Ricinus communis OX=3988 GN=RCOM_1067650 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-14
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PGVVANRVALEACVQARNEG DLAREGNEIICE  KWSP+LA ACE+
Sbjct: 304 PGVVANRVALEACVQARNEGHDLAREGNEIICEVGKWSPELAAACEI 350

[Close]

BLAST of Bhi09G000233 vs. ExPASy TrEMBL
Match: A0A5J5V5D8 (Ribulose bisphosphate carboxylase large chain OS=Gossypium barbadense OX=3634 GN=ES319_A07G178500v1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 32  PGVVANRVALEACVQARNEGRDLAREGNEIICEDSKWSPKLAVACEV 79
           PG VANRVALEACVQARNEGRDLAREGNEII E SKWSP+LAVACEV
Sbjct: 402 PGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAVACEV 448

The following BLAST results are available for this feature:

BLAST of Bhi09G000233 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	3.0e-16	85.11	ribulose-bisphosphate carboxylases	[more]

BLAST of Bhi09G000233 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q31827	1.3e-16	89.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Aesculus pavia OX=43...	[more]
Q07209	1.3e-16	89.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Ailanthus altissima ...	[more]
Q31730	1.3e-16	89.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bauera rubioides OX=...	[more]
P36481	1.3e-16	89.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Berzelia lanuginosa ...	[more]
O19872	1.3e-16	89.36	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Bixa orellana OX=666...	[more]

BLAST of Bhi09G000233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q95B27	2.0e-15	91.49	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Prunus mume OX=10210...	[more]
A0A1B1QBL0	2.0e-15	91.49	Ribulose bisphosphate carboxylase large chain OS=Cephalanthera humilis OX=115820...	[more]
A0A7J7NE37	9.7e-15	87.23	Ribulose bisphosphate carboxylase large chain OS=Kingdonia uniflora OX=39325 GN=...	[more]
B9SD19	1.3e-14	87.23	Ribulose bisphosphate carboxylase large chain OS=Ricinus communis OX=3988 GN=RCO...	[more]
A0A5J5V5D8	1.7e-14	91.49	Ribulose bisphosphate carboxylase large chain OS=Gossypium barbadense OX=3634 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 27..78 e-value: 1.1E-10 score: 42.9
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 32..77
None	No IPR available	PANTHER	PTHR47910	RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, CATALYTIC DOMAIN-CONTAINING PROTEIN	coord: 30..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000233	Bhi09M000233	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity