Bhi09G000122 (gene) Wax gourd (B227) v1

Overview
NameBhi09G000122
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRibosome biogenesis protein
Locationchr9: 3227097 .. 3228485 (+)
RNA-Seq ExpressionBhi09G000122
SyntenyBhi09G000122
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAACCAGTCTCTCGGTATGGCTGCATGCTTTGAGTTTTCCTCTCTTATGTGTAGCTTCTTTTTTCGTTTTCGTCAACCCTAAGGTTTCTTGTCTGTTATCCATGAAGGTCGGATTCAAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGTGAGTGTTGTTTTCGTCTTTGAGTGTTGTTTTGGTATCATAAACAATGAAATCTTAAATATGGCTACATGCAGGAGTTGGAGAAACTATTTCTACCTTGAATGCTCAAAAGACTATTACTAAGGTAAAATTATTTATTCCATTACTTTGCACATAGCATTATATTTCTTCATTAGTTATGGCTATTTAATTTTTTTTTTATTTCTTTTCATTTTTTGTTATTGATGGCCTTTAATACTCTTCTATTTTTATTATGTGAATAGTTCTAGAACAATTTTCTGTTTCTCCTTTTAACTTTTAAACTATCTGTAGCTATAATTTTCTTGAAATCTCAATGTGCACATGGTGATAAACATTAGGTTCAGCGAAGAGATTATGTATATGTCAAAATTAGCCCAAGTTTCTTATAACCAAACGTTGCAAGGTCATAAATTGATCATGGAACCACATGAACATAGTTACAAGGGTTGATTGGAATACCCTGGAATTTCCCTCCTCTACAATGAAAAACTTGACATGGAGCGCTTCAATCTGTCTACTTTACTTTTAAATTTTAAGATTTGAAAATAATTGTTGTAGTTACAACTATTATTGACATCAATAATATAACGTGATTGTCAGTCAATATTTAGAATGGGAATATTTTGATTCGTTATTTGATTGGTTCAATGTTCTTATTCCTTGTACAAAGTATTCTTGTACATGTTGCATACTTCTGGGGCGGAAAAAAAAAAGAAAAGAATTCATTTTGCTCTTTTAGTATTCTACTAAAGTTGATTATGTGTAATAGAAGAAAAGCCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACCCTGTCCGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCATCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATGTAAGTTGCTTGTTATCATTATTTGACATGTTTTATAATTTATCCTTGTTTATGTATTGTAATGATGGGTTCATTTTAACAGATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAGAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCGAAAGCCTCTCCAAGACCTTCGTCTATGGAGATGTGA

mRNA sequence

ATGGGCAAACCAGTCTCTCGGTCGGATTCAAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTTCTACCTTGAATGCTCAAAAGACTATTACTAAGAAGAAAAGCCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACCCTGTCCGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCATCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAGAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCGAAAGCCTCTCCAAGACCTTCGTCTATGGAGATGTGA

Coding sequence (CDS)

ATGGGCAAACCAGTCTCTCGGTCGGATTCAAAATCTAAAGCTGAACGCAAATTTGAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACTATTTCTACCTTGAATGCTCAAAAGACTATTACTAAGAAGAAAAGCCATCGAAGACGTAAAAGAGACTTGAAGGCTTTTGATCTTTCTACCCTGTCCGAGTTTCTTCCTGGATTGGAGGCGCCTAAACAAAAACCATCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTATATTGAAGGAGAGAAAGCAAATGGGTACTGTTCTTAATCACCCTGTATTTCAGGCAGACCCATTGAGAGCTATTCAACTACATTTAGAGGGCACACAACCAATTGAGGAACCAAAGAAAAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAGAAGTCGAAAGCCTCTCCAAGACCTTCGTCTATGGAGATGTGA

Protein sequence

MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLSTLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHLEGTQPIEEPKKKTNKNGSKKRKEKKSKASPRPSSMEM
Homology
[Close]
BLAST of Bhi09G000122 vs. TAIR 10
Match: AT2G01640.1 (unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-32
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0 

Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60
           MGKP   S+  +K+++KFEKK+QFY +V +T+++L+ QK I KKK  R R++ LKA+DL+
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLT 60

Query: 61  TLSEFLPGLEA-PKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLH 120
            LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP FQADP+ +I  H
Sbjct: 61  NLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQH 120

Query: 121 LEGTQP--IEEPKKKTNKNGSKKRKEKKSK 148
           L   QP   E+PKKKTN NGSKKR +KK K
Sbjct: 121 LLSQQPPVEEKPKKKTNTNGSKKRNKKKGK 150

[Close]
BLAST of Bhi09G000122 vs. TAIR 10
Match: AT2G01640.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-32
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0 

Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60
           MGKP   S+  +K+++KFEKK+QFY +V +T+++L+ QK I KKK  R R++ LKA+DL+
Sbjct: 1   MGKPSKGSEVTTKSDKKFEKKLQFYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLT 60

Query: 61  TLSEFLPGLEA-PKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLH 120
            LSEFLP   A  K    A ELK+NCK R K +L E +++  VL+HP FQADP+ +I  H
Sbjct: 61  NLSEFLPEFNALQKSALPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQH 120

Query: 121 LEGTQP--IEEPKKKTNKNGSKKRKEKKSK 148
           L   QP   E+PKKKTN NGSKKR +KK K
Sbjct: 121 LLSQQPPVEEKPKKKTNTNGSKKRNKKKGK 150

[Close]
BLAST of Bhi09G000122 vs. ExPASy TrEMBL
Match: A0A0A0L113 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.3e-70
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0 

Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60
           MGKPVSRSD KSKAERKFEKKVQFYERVGETI+TLNAQK+ITKKK+HRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGETITTLNAQKSITKKKNHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHL 120
           TLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRA+QLHL
Sbjct: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120

Query: 121 EGTQPIEEP-KKKTNKNGSKKRKEKKSKASPRPSSMEM 158
           EGTQPIEEP KKK NKNGSKKRKEKKSKAS +PSSMEM
Sbjct: 121 EGTQPIEEPKKKKMNKNGSKKRKEKKSKASAKPSSMEM 158

[Close]
BLAST of Bhi09G000122 vs. ExPASy TrEMBL
Match: A0A5D3BQL6 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00780 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.1e-69
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 0 

Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60
           MGKPVSRSD KSKAERKFEKKVQFYERVGE+I+TLNAQK+ITKKK+HRRRKRDLKAFDLS
Sbjct: 1   MGKPVSRSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLS 60

Query: 61  TLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHL 120
           TLSEFLPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRA+QLHL
Sbjct: 61  TLSEFLPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHL 120

Query: 121 EGTQPIEEP-KKKTNKNGSKKRKEKKSKASPRPSSMEM 158
           EGTQP EEP KKK NKNGSKKRKEKK KAS RPSSMEM
Sbjct: 121 EGTQPTEEPKKKKMNKNGSKKRKEKKLKASARPSSMEM 158

[Close]
BLAST of Bhi09G000122 vs. ExPASy TrEMBL
Match: A0A5A7V4K7 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001080 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 6   SRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLSTLSEF 65
           ++SD KSKAERKFEKKVQFYERVGE+I+TLNAQK+ITKKK+HRRRKRDLKAFDLSTLSEF
Sbjct: 214 NQSDVKSKAERKFEKKVQFYERVGESIATLNAQKSITKKKNHRRRKRDLKAFDLSTLSEF 273

Query: 66  LPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHLEGTQP 125
           LPGLEA KQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRA+QLHLEGTQP
Sbjct: 274 LPGLEATKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQP 333

Query: 126 IEEP-KKKTNKNGSKKRKEKKSKASPRPSSMEM 158
           IEEP KKK NKNGSKKRKEKKSKA  RPSSMEM
Sbjct: 334 IEEPKKKKINKNGSKKRKEKKSKALARPSSMEM 366

[Close]
BLAST of Bhi09G000122 vs. ExPASy TrEMBL
Match: A0A6J1E5M8 (putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=LOC111430153 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-60
Identity = 132/158 (83.54%), Postives = 143/158 (90.51%), Query Frame = 0 

Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60
           MGKP SRSDSKSKAERKFEKK+QFYERVGETI+TLNAQKTITKKK  RRRKRDLKAFDL+
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKKL-RRRKRDLKAFDLT 60

Query: 61  TLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHL 120
            LSEFLPGL+APKQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADPL AI LHL
Sbjct: 61  ALSEFLPGLKAPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHL 120

Query: 121 EGTQPIEE-PKKKTNKNGSKKRKEKKSKASPRPSSMEM 158
           + TQP+EE  KKKTN+NGSKKRKEKKSKA+ +PSSMEM
Sbjct: 121 QSTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

[Close]
BLAST of Bhi09G000122 vs. ExPASy TrEMBL
Match: A0A6J1JDX4 (putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LOC111484925 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.8e-60
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 0 

Query: 1   MGKPVSRSDSKSKAERKFEKKVQFYERVGETISTLNAQKTITKKKSHRRRKRDLKAFDLS 60
           MGKP SRSDSKSKAERKFEKK+QFYERVGETI+TLNAQKTITKKK  RRRKRDLKAFDL+
Sbjct: 1   MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKKKL-RRRKRDLKAFDLT 60

Query: 61  TLSEFLPGLEAPKQKPSAAELKLNCKSRLKFILKERKQMGTVLNHPVFQADPLRAIQLHL 120
            LSEFLPGL+ PKQK S  ELK+NCKSRLKF+LKE KQMGTVLNHP FQADPL AI LHL
Sbjct: 61  ALSEFLPGLKTPKQKTSDTELKVNCKSRLKFVLKETKQMGTVLNHPAFQADPLGAIHLHL 120

Query: 121 EGTQPIEE-PKKKTNKNGSKKRKEKKSKASPRPSSMEM 158
           E TQP+EE  KKKTN+NGSKKRKEKKSKA+ +PSSMEM
Sbjct: 121 ESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM 157

The following BLAST results are available for this feature:
BLAST of Bhi09G000122 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01640.12.7e-3252.67unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bac... [more]
AT2G01640.22.7e-3252.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
BLAST of Bhi09G000122 vs. TAIR 10
Match NameE-valueIdentityDescription
BLAST of Bhi09G000122 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1133.3e-7093.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1[more]
A0A5D3BQL68.1e-6992.41Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A5A7V4K71.9e-6591.50Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1E5M81.4e-6083.54putative ribosome biogenesis protein slx9-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1JDX41.8e-6083.54putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028160Ribosome biogenesis protein Slx9-likePFAMPF15341SLX9coord: 10..122
e-value: 3.7E-9
score: 37.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..157
NoneNo IPR availablePANTHERPTHR31109PROTEIN FAM207Acoord: 7..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000122Bhi09M000122mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component GO:0030686 90S preribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0030688 preribosome, small subunit precursor