Bhi09G000083 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000083
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Acyl-[acyl-carrier-protein] hydrolase
Location	chr9: 2060414 .. 2060638 (-)
RNA-Seq Expression	Bhi09G000083
Synteny	Bhi09G000083

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACTCCTCGATGGATATCAGAAAATCATCGGTTGTCGGCTGTAACAATCAAATACCTTAAAGAATGTGGAGTAGAAAAACAGTTACAATCTTTGTCTATGCCTATGGAAAATAGCGTCATTTTGAATGGTAAAAAAGAAGACATCAAACTCCACCACTCTGTTCTCACGGATGGAATTGAACTTGTTCGAGCAACGACTCTTTGGACACCAAAATCCATTTAA

mRNA sequence

GGAACTCCTCGATGGATATCAGAAAATCATCGGTTGTCGGCTGTAACAATCAAATACCTTAAAGAATGTGGAGTAGAAAAACAGTTACAATCTTTGTCTATGCCTATGGAAAATAGCGTCATTTTGAATGGTAAAAAAGAAGACATCAAACTCCACCACTCTGTTCTCACGGATGGAATTGAACTTGTTCGAGCAACGACTCTTTGGACACCAAAATCCATTTAA

Coding sequence (CDS)

GGAACTCCTCGATGGATATCAGAAAATCATCGGTTGTCGGCTGTAACAATCAAATACCTTAAAGAATGTGGAGTAGAAAAACAGTTACAATCTTTGTCTATGCCTATGGAAAATAGCGTCATTTTGAATGGTAAAAAAGAAGACATCAAACTCCACCACTCTGTTCTCACGGATGGAATTGAACTTGTTCGAGCAACGACTCTTTGGACACCAAAATCCATTTAA

Protein sequence

GTPRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNGKKEDIKLHHSVLTDGIELVRATTLWTPKSI

Homology

[Close]

BLAST of Bhi09G000083 vs. TAIR 10
Match: AT1G08510.1 (fatty acyl-ACP thioesterases B )

HSP 1 Score: 43.9 bits (102), Expect = 6.5e-05
Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 3   PRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNGKKEDIKLHHSV-LTDGIE 62
           P  I E  +L ++T++Y +ECG +  LQSL+      +       D++  H + L DG E
Sbjct: 332 PVGIMERQKLKSMTLEYRRECGRDSVLQSLTAVTGCDIGNLATAGDVECQHLLRLQDGAE 391

Query: 63  LVRATTLWTPKS 74
           +VR  T W+ K+
Sbjct: 392 VVRGRTEWSSKT 403

[Close]

BLAST of Bhi09G000083 vs. ExPASy Swiss-Prot
Match: Q9SQI3 (Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum OX=3635 GN=FATB1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 3   PRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNGKKEDIKLHHSV-LTDGIE 62
           P  I E+H LSA+T++Y +ECG +  LQSL+   +++        +    H + L DG E
Sbjct: 327 PLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNVGEFNCQHLLRLDDGAE 386

Query: 63  LVRATTLWTPK 73
           +VR  T W PK
Sbjct: 387 IVRGRTRWRPK 397

[Close]

BLAST of Bhi09G000083 vs. ExPASy Swiss-Prot
Match: Q9SJE2 (Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FATB PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.2e-04
Identity = 24/72 (33.33%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 3   PRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNGKKEDIKLHHSV-LTDGIE 62
           P  I E  +L ++T++Y +ECG +  LQSL+      +       D++  H + L DG E
Sbjct: 332 PVGIMERQKLKSMTLEYRRECGRDSVLQSLTAVTGCDIGNLATAGDVECQHLLRLQDGAE 391

Query: 63  LVRATTLWTPKS 74
           +VR  T W+ K+
Sbjct: 392 VVRGRTEWSSKT 403

[Close]

BLAST of Bhi09G000083 vs. ExPASy TrEMBL
Match: A0A5A7UZ85 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002510 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 55/78 (70.51%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   GTPRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNG----KKEDIKLHHSVL 60
           GTPRW+ E+HRLS VT+KYLKECGV+K LQSLSMP++N VI NG    K+  IKLHHS++
Sbjct: 283 GTPRWMLESHRLSTVTVKYLKECGVDKILQSLSMPIQNDVISNGNYLVKENYIKLHHSIV 342

Query: 61  TDGIELVRATTLWTPKSI 75
           ++GIELVRATTLWTP SI
Sbjct: 343 SEGIELVRATTLWTPYSI 360

[Close]

BLAST of Bhi09G000083 vs. ExPASy TrEMBL
Match: A0A1S4E345 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo OX=3656 GN=LOC107991799 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.0e-22
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1   GTPRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNG----KKEDIKLHHSVL 60
           GTPRW+ E+HRLS VT+KYLKECGV+K LQSLSMP++N VI NG    K+  IKLHHS++
Sbjct: 63  GTPRWMLESHRLSTVTVKYLKECGVDKILQSLSMPIQNDVISNGNSLVKENYIKLHHSIV 122

Query: 61  TDGIELVRATTLWTPKSI 75
           ++GIELVRATTLW P SI
Sbjct: 123 SEGIELVRATTLWIPYSI 140

[Close]

BLAST of Bhi09G000083 vs. ExPASy TrEMBL
Match: A0A0A0KAB7 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis sativus OX=3659 GN=Csa_7G440560 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   GTPRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNG----KKEDIKLHHSVL 60
           GTP W+ E+H LSA+TIKYLKECGV K+LQSLSMP++N  + NG    ++  IKLHHSVL
Sbjct: 63  GTPGWVLESHWLSALTIKYLKECGVGKKLQSLSMPIQNDTVSNGNYLVRENFIKLHHSVL 122

Query: 61  TDGIELVRATTLWTPKSI 75
           ++GIELVRATTLWTP SI
Sbjct: 123 SEGIELVRATTLWTPYSI 140

[Close]

BLAST of Bhi09G000083 vs. ExPASy TrEMBL
Match: A0A6J1H8Q2 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111461080 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.7e-19
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 1   GTPRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNG----KKEDIKLHHSVL 60
           GTPR + E ++LS +TIKYLKEC V++QLQSLS+P+EN V+ NG    K +DIKLHHS+L
Sbjct: 273 GTPRSVLEKYQLSGITIKYLKECSVDQQLQSLSVPLENDVV-NGTPLIKDKDIKLHHSIL 332

Query: 61  TDGIELVRATTLWTPK 73
           +DGIELVRA T+WTPK
Sbjct: 333 SDGIELVRAKTVWTPK 347

[Close]

BLAST of Bhi09G000083 vs. ExPASy TrEMBL
Match: A0A6J1KZF4 (Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita maxima OX=3661 GN=LOC111497736 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.2e-19
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1   GTPRWISENHRLSAVTIKYLKECGVEKQLQSLSMPMENSVILNG---KKEDIKLHHSVLT 60
           GTPR + EN++LS +TIKYLKEC V++QLQSLS+P+EN V+      K +DIKLHHS+L+
Sbjct: 273 GTPRSVLENYQLSRITIKYLKECSVDQQLQSLSLPLENDVVNVTPLIKDKDIKLHHSILS 332

Query: 61  DGIELVRATTLWTPK 73
           DGIELVRA T+WTPK
Sbjct: 333 DGIELVRAKTVWTPK 347

The following BLAST results are available for this feature:

BLAST of Bhi09G000083 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08510.1	6.5e-05	33.33	fatty acyl-ACP thioesterases B	[more]

BLAST of Bhi09G000083 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SQI3	1.7e-05	38.03	Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum...	[more]
Q9SJE2	9.2e-04	33.33	Palmitoyl-acyl carrier protein thioesterase, chloroplastic OS=Arabidopsis thalia...	[more]

BLAST of Bhi09G000083 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZ85	1.2e-22	70.51	Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S4E345	6.0e-22	69.23	Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis melo OX=3656 GN=LOC107991799 PE...	[more]
A0A0A0KAB7	6.6e-21	67.95	Acyl-[acyl-carrier-protein] hydrolase OS=Cucumis sativus OX=3659 GN=Csa_7G440560...	[more]
A0A6J1H8Q2	4.7e-19	65.79	Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita moschata OX=3662 GN=LOC111461...	[more]
A0A6J1KZF4	6.2e-19	65.33	Acyl-[acyl-carrier-protein] hydrolase OS=Cucurbita maxima OX=3661 GN=LOC11149773...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.129.10	Hotdog Thioesterase	coord: 1..74 e-value: 9.6E-11 score: 43.3
IPR002864	Acyl-ACP thioesterase	PFAM	PF01643	Acyl-ACP_TE	coord: 5..70 e-value: 2.7E-6 score: 26.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000083	Bhi09M000083	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity
molecular_function	GO:0016790	thiolester hydrolase activity