Bhi09G000064 (gene) Wax gourd (B227) v1

Overview
NameBhi09G000064
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionU3 small nucleolar RNA-associated protein 20
Locationchr9: 1330022 .. 1330541 (-)
RNA-Seq ExpressionBhi09G000064
SyntenyBhi09G000064
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGACATATTTGGCGTCCCTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTGCTCTCTAGTGAGAAGGTTGGGCTTGAAGAATTAAATAGACTTGTGTACCTTGCAAAAGATATAGCTCATGTTCACAAGTCTTGGTAGCTGTAGTTGATTATTTGGATTTTATTTATGAGTAAGTTGGAAATTTTGCATTCTAGACAATTTTTTCTACCTTCTAATCATTATTTCATCTCCAACCTTGGTTGTTGGAAGCATGTAGTATTCCCATTAACCGTGTTAATTGTAGGCTAGAGGTCAGCAAAATATTCTATTCTGAAGAGTTTCAAGCAGATAAGGTTGAAGATGCTGTACAGGTGTTTGCAGATAATTTGCGTCACCCAGATAAGGGAGTTCGTATATCTACTCTTAGAATATTATGCCACTATGAGCCTTTTCGGTCTGCCACCCTTACAAAGGACCCTTCAATTGATAACGAGATGGAAACTGAAAATTTGGAATAA

mRNA sequence

GCGACATATTTGGCGTCCCTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTGCTCTCTAGTGAGAAGGTTGGGCTTGAAGAATTAAATAGACTTGTGTACCTTGCAAAAGATATAGCTCATGTTCACAAGTCTTGGCTAGAGGTCAGCAAAATATTCTATTCTGAAGAGTTTCAAGCAGATAAGGTTGAAGATGCTGTACAGGTGTTTGCAGATAATTTGCGTCACCCAGATAAGGGAGTTCGTATATCTACTCTTAGAATATTATGCCACTATGAGCCTTTTCGGTCTGCCACCCTTACAAAGGACCCTTCAATTGATAACGAGATGGAAACTGAAAATTTGGAATAA

Coding sequence (CDS)

GCGACATATTTGGCGTCCCTAAAGAAAATTTGGAAAGCATAATTGGTGCCACCATAGGTTCTTACCTTAAGTTGCTCTCTAGTGAGAAGGTTGGGCTTGAAGAATTAAATAGACTTGTGTACCTTGCAAAAGATATAGCTCATGTTCACAAGTCTTGGCTAGAGGTCAGCAAAATATTCTATTCTGAAGAGTTTCAAGCAGATAAGGTTGAAGATGCTGTACAGGTGTTTGCAGATAATTTGCGTCACCCAGATAAGGGAGTTCGTATATCTACTCTTAGAATATTATGCCACTATGAGCCTTTTCGGTCTGCCACCCTTACAAAGGACCCTTCAATTGATAACGAGATGGAAACTGAAAATTTGGAATAA

Protein sequence

DIFGVPKENLESIIGATIGSYLKLLSSEKVGLEELNRLVYLAKDIAHVHKSWLEVSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSATLTKDPSIDNEMETENLE
Homology
BLAST of Bhi09G000064 vs. TAIR 10
Match: AT4G30990.1 (ARM repeat superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-11
Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 0

Query: 6   PKENLESIIGATIGSYLKLLSSEKVGLEEL-----------NRLVYLAKDIAHVHKSWLE 65
           P+   +S++G T+ S  K+       LEE              L  +A  +  +H+  L 
Sbjct: 555 PELMWQSLLGTTLRSCYKMTGINHSDLEEALSFAKDYKSCEQVLSPVADVLEFMHRPALA 614

Query: 66  VSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSATLTKDPSID- 120
             +     E QA+K  DA ++F++NLRHP+K +R+ TLRILCH+E     TL+ DPS + 
Sbjct: 615 HGRSKPYPELQANKAGDAFEIFSENLRHPNKNIRLMTLRILCHFE-----TLSSDPSFEE 674

BLAST of Bhi09G000064 vs. TAIR 10
Match: AT4G30990.2 (ARM repeat superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-11
Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 0

Query: 6   PKENLESIIGATIGSYLKLLSSEKVGLEEL-----------NRLVYLAKDIAHVHKSWLE 65
           P+   +S++G T+ S  K+       LEE              L  +A  +  +H+  L 
Sbjct: 555 PELMWQSLLGTTLRSCYKMTGINHSDLEEALSFAKDYKSCEQVLSPVADVLEFMHRPALA 614

Query: 66  VSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSATLTKDPSID- 120
             +     E QA+K  DA ++F++NLRHP+K +R+ TLRILCH+E     TL+ DPS + 
Sbjct: 615 HGRSKPYPELQANKAGDAFEIFSENLRHPNKNIRLMTLRILCHFE-----TLSSDPSFEE 674

BLAST of Bhi09G000064 vs. ExPASy TrEMBL
Match: A0A0A0LIC2 (DRIM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G148430 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 98/138 (71.01%), Postives = 106/138 (76.81%), Query Frame = 0

Query: 1   DIFGVPKENLESIIGATIGSYLKLLSSEKVGLEELNRLVYLAK----------------D 60
           DIFG+PKE LESIIGATIGSYLKLLSSEK GLEEL+RLVYLAK                D
Sbjct: 555 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 614

Query: 61  IAHVHKSWLEVSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSA 120
             +      ++SK  YSEEFQADKVEDAVQVFADNLRH DKGVR+STLRILCHYEP +SA
Sbjct: 615 FIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCHYEPLQSA 674

Query: 121 TLTKDPSIDNEMETENLE 123
           TLTK+ SIDNEME ENLE
Sbjct: 675 TLTKESSIDNEMEAENLE 692

BLAST of Bhi09G000064 vs. ExPASy TrEMBL
Match: A0A6J1KL31 (small subunit processome component 20 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494258 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 97/138 (70.29%), Postives = 103/138 (74.64%), Query Frame = 0

Query: 1   DIFGVPKENLESIIGATIGSYLKLLSSEKVGLEELNRLVYLAK----------------D 60
           +IFGVP+EN ES+IGATIGSYLKLLS EK GLEE  RLVYLAK                D
Sbjct: 553 NIFGVPEENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYLD 612

Query: 61  IAHVHKSWLEVSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSA 120
             H     ++VSK  YSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEP RS 
Sbjct: 613 FIHGPALEVDVSKRIYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPLRSE 672

Query: 121 TLTKDPSIDNEMETENLE 123
              KDP+IDNEMETENLE
Sbjct: 673 IRIKDPAIDNEMETENLE 690

BLAST of Bhi09G000064 vs. ExPASy TrEMBL
Match: A0A6J1HMY3 (small subunit processome component 20 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464403 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 95/138 (68.84%), Postives = 102/138 (73.91%), Query Frame = 0

Query: 1   DIFGVPKENLESIIGATIGSYLKLLSSEKVGLEELNRLVYLAK----------------D 60
           +IFGVPKEN ES+IGATIGSYLKLLS EK GLEE  RLVYLAK                +
Sbjct: 553 NIFGVPKENWESLIGATIGSYLKLLSHEKAGLEESKRLVYLAKRYSSCSQVLVAVADYLE 612

Query: 61  IAHVHKSWLEVSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSA 120
             H     ++VSK  YSEEFQADKVEDAVQVFADNLRHPDK VR+STLRILCHYEP RS 
Sbjct: 613 FIHGPALEVDVSKRIYSEEFQADKVEDAVQVFADNLRHPDKVVRMSTLRILCHYEPLRSG 672

Query: 121 TLTKDPSIDNEMETENLE 123
            L KDP+ DNEMETENLE
Sbjct: 673 ILIKDPATDNEMETENLE 690

BLAST of Bhi09G000064 vs. ExPASy TrEMBL
Match: A0A5D3DDG1 (U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00530 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 93/136 (68.38%), Postives = 101/136 (74.26%), Query Frame = 0

Query: 1   DIFGVPKENLESIIGATIGSYLKLLSSEKVGLEELNRLVYLAK----------------D 60
           DIFG+PKE LESIIGATIGSYLKLLSSEK GLEEL+RLVYLAK                D
Sbjct: 469 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 528

Query: 61  IAHVHKSWLEVSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSA 120
             +      ++SK  YSEEFQADKVEDAVQVFADNLRH DKGVR+STLRILC YEP +SA
Sbjct: 529 FIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCQYEPLQSA 588

BLAST of Bhi09G000064 vs. ExPASy TrEMBL
Match: A0A5A7SR09 (U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001740 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 93/136 (68.38%), Postives = 101/136 (74.26%), Query Frame = 0

Query: 1   DIFGVPKENLESIIGATIGSYLKLLSSEKVGLEELNRLVYLAK----------------D 60
           DIFG+PKE LESIIGATIGSYLKLLSSEK GLEEL+RLVYLAK                D
Sbjct: 555 DIFGIPKEKLESIIGATIGSYLKLLSSEKAGLEELSRLVYLAKRYSSCSQVLVAVADYLD 614

Query: 61  IAHVHKSWLEVSKIFYSEEFQADKVEDAVQVFADNLRHPDKGVRISTLRILCHYEPFRSA 120
             +      ++SK  YSEEFQADKVEDAVQVFADNLRH DKGVR+STLRILC YEP +SA
Sbjct: 615 FIYGPALEADISKRIYSEEFQADKVEDAVQVFADNLRHSDKGVRLSTLRILCQYEPLQSA 674

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G30990.17.7e-1133.08ARM repeat superfamily protein [more]
AT4G30990.27.7e-1133.08ARM repeat superfamily protein [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LIC21.3e-4271.01DRIM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G148430 PE=4 S... [more]
A0A6J1KL311.1e-4170.29small subunit processome component 20 homolog OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1HMY31.6e-4068.84small subunit processome component 20 homolog OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5D3DDG11.4e-3968.38U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5A7SR091.4e-3968.38U3 small nucleolar RNA-associated protein 20 OS=Cucumis melo var. makuwa OX=1194... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000064Bhi09M000064mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0030686 90S preribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome