Bhi09G000043 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000043
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Late embryogenesis abundant protein
Location	chr9: 915946 .. 916696 (+)
RNA-Seq Expression	Bhi09G000043
Synteny	Bhi09G000043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCAAAAACAAAAGAAAAATTACGAAAAATACAGAAGCAAAATCTAAAGTCCAATTTTGAAAAATGGCATCTCACAATCAGAGCTATAGAGCTGGTGAAACCAAGGGACGAGCTGAGGTATTTGATAATGTTTTTATGATCAATTCTTCAAAAAAAAAAAGGAAAAAAACGATTTGACATTGAATGTTTTTATTTAGTTTTAAAATTTAAAATTTTACTTTTAGCCTTTTTGTTTTGTTGTTTTTAATTTAACTAAATATACTCCCTTTATCTTGTTATTAATCTCTATTAACTTTCCTCAAAGACGAGTATTAGTGAAAAATTGAATTTAGGTGAAATTAATTGTTCCGTTTAGGAGAAGACGAACGAGACGATGGGTACGATGGGGGACAAGGCCAGAGAAGCAAAGGAGAAGACATACGAAACTGGGCGGGCCGCAAGGGAGAAGGCCCATGGAGCAGCGGACTCGACAAAAGAATGGGCCTCAGATACGGCCCAAGGGGCCCGTGAGAAAGGCCCAATCTGGAAAAGAGACAACCGGAGGGATTCTAGAGCAGACTGGTGAGAAAGTGAAGAGTATGGCCCAAGGAGCAGCGGATGCTGTGAAAAGCACTTTTGGGATGGCCCAGCACGATGATGAATTGTGGACAAAGACAGTGACCCCACCACAATACCGTAGGGCTTAAGTCGTAATTTCGGATCTATGTGGGAATGTAGTTGTCTGTGTCTGTGTGTCTGTTTGTTTGGCT

mRNA sequence

CAAGCAAAAACAAAAGAAAAATTACGAAAAATACAGAAGCAAAATCTAAAGTCCAATTTTGAAAAATGGCATCTCACAATCAGAGCTATAGAGCTGGTGAAACCAAGGGACGAGCTGAGGAGAAGACGAACGAGACGATGGGTACGATGGGGGACAAGGCCAGAGAAGCAAAGGAGAAGACATACGAAACTGGGCGGGCCGCAAGGGAGAAGGCCCATGGAGCAGCGGACTCGACAAAAGAATGGGCCTCAGATACGGCCCAAGGGGCCCGTGAGAAAGGCCCAATCTGGAAAAGAGACAACCGGAGGGATTCTAGAGCAGACTGGTGAGAAAGTGAAGAGTATGGCCCAAGGAGCAGCGGATGCTGTGAAAAGCACTTTTGGGATGGCCCAGCACGATGATGAATTGTGGACAAAGACAGTGACCCCACCACAATACCGTAGGGCTTAAGTCGTAATTTCGGATCTATGTGGGAATGTAGTTGTCTGTGTCTGTGTGTCTGTTTGTTTGGCT

Coding sequence (CDS)

ATGGCATCTCACAATCAGAGCTATAGAGCTGGTGAAACCAAGGGACGAGCTGAGGAGAAGACGAACGAGACGATGGGTACGATGGGGGACAAGGCCAGAGAAGCAAAGGAGAAGACATACGAAACTGGGCGGGCCGCAAGGGAGAAGGCCCATGGAGCAGCGGACTCGACAAAAGAATGGGCCTCAGATACGGCCCAAGGGGCCCGTGAGAAAGGCCCAATCTGGAAAAGAGACAACCGGAGGGATTCTAGAGCAGACTGGTGA

Protein sequence

MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEWASDTAQGAREKGPIWKRDNRRDSRADW

Homology

[Close]

BLAST of Bhi09G000043 vs. TAIR 10
Match: AT3G15670.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-13
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          MAS+ QSY+AGET+G+A+EKT + MGTM DKA E ++KT +T + A++KAH  A S K+ 
Sbjct: 1  MASNQQSYKAGETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDK 60

Query: 61 ASDTAQGAREK 72
           S TAQ A++K
Sbjct: 61 TSQTAQAAQQK 71

[Close]

BLAST of Bhi09G000043 vs. TAIR 10
Match: AT1G52690.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1  MASH-NQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKE 60
          MASH  QSY+AGET+G+A+EKT E MGTMGDK + AK+KT ET ++A++KAH  A S K+
Sbjct: 1  MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61 WASDTAQGAREK 72
            S  AQ  +E+
Sbjct: 61 KTSQAAQTTQER 72

[Close]

BLAST of Bhi09G000043 vs. TAIR 10
Match: AT1G52690.2 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1  MASH-NQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKE 60
          MASH  QSY+AGET+G+A+EKT E MGTMGDK + AK+KT ET ++A++KAH  A S K+
Sbjct: 1  MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61 WASDTAQGAREK 72
            S  AQ  +E+
Sbjct: 61 KTSQAAQTTQER 72

[Close]

BLAST of Bhi09G000043 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 3  SHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTK 59
          S N S++AG+ KG+ +EK +  M    + A+ AKE   ETG+  +EKA GA +S K
Sbjct: 5  SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

[Close]

BLAST of Bhi09G000043 vs. ExPASy Swiss-Prot
Match: Q9LW12 (Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          MAS+ QSY+AGET+G+A+EKT + MGTM DKA E ++KT +T + A++KAH  A S K+ 
Sbjct: 1  MASNQQSYKAGETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDK 60

Query: 61 ASDTAQGAREK 72
           S TAQ A++K
Sbjct: 61 TSQTAQAAQQK 71

[Close]

BLAST of Bhi09G000043 vs. ExPASy Swiss-Prot
Match: Q96270 (Late embryogenesis abundant protein 7 OS=Arabidopsis thaliana OX=3702 GN=LEA7 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-12
Identity = 41/72 (56.94%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 1  MASH-NQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKE 60
          MASH  QSY+AGET+G+A+EKT E MGTMGDK + AK+KT ET ++A++KAH  A S K+
Sbjct: 1  MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61 WASDTAQGAREK 72
            S  AQ  +E+
Sbjct: 61 KTSQAAQTTQER 72

[Close]

BLAST of Bhi09G000043 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-10
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          MASH+QSY+AGET GR EEKTN+ +G + DKA+ AKEK  +  + A++K    A + KE 
Sbjct: 1  MASHDQSYKAGETMGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEK 60

Query: 61 ASDTAQGAREK 72
             TAQ A+EK
Sbjct: 61 TQQTAQAAKEK 71

[Close]

BLAST of Bhi09G000043 vs. ExPASy Swiss-Prot
Match: O49817 (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-10
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          M SH+QSYRAGE KGR EEKTN+ +G + DKA+ AKEK  +  + A++K    A + KE 
Sbjct: 1  MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTSQTAQAAKEK 60

Query: 61 ASDTAQGAREK 72
             TAQ A++K
Sbjct: 61 TQQTAQAAKDK 71

[Close]

BLAST of Bhi09G000043 vs. ExPASy Swiss-Prot
Match: P13934 (Late embryogenesis abundant protein 76 OS=Brassica napus OX=3708 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-09
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKT-----------YETGRAAREK 60
          MAS+ QSY+AGET+G+ +EKT + MG M DKA E K+KT            ET +AA++K
Sbjct: 1  MASNQQSYKAGETRGKTQEKTGQAMGAMRDKAEEGKDKTSQTAQKAQQKAQETAQAAKDK 60

Query: 61 AHGAADSTKEWASDTAQGAREK 72
             AA +T++ A +TAQ A++K
Sbjct: 61 TSQAAQTTQQKAQETAQAAKDK 82

[Close]

BLAST of Bhi09G000043 vs. ExPASy TrEMBL
Match: A0A5A7UUB6 (Late embryogenesis abundant protein D-7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002220 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          MASHNQSYRAGETKGRAEEKTN+ MGTMG+KAREAKEKTYETGRA ++KAHGAADSTKEW
Sbjct: 1  MASHNQSYRAGETKGRAEEKTNQAMGTMGEKAREAKEKTYETGRAVKDKAHGAADSTKEW 60

Query: 61 ASDTAQGAREKGPIWK 77
          ASDTAQ  REK    K
Sbjct: 61 ASDTAQAGREKAQTGK 76

[Close]

BLAST of Bhi09G000043 vs. ExPASy TrEMBL
Match: A0A1S3CEC9 (late embryogenesis abundant protein D-7 OS=Cucumis melo OX=3656 GN=LOC103499778 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          MASHNQSYRAGETKGRAEEKTN+ MGTMG+KAREAKEKTYETGRA ++KAHGAADSTKEW
Sbjct: 1  MASHNQSYRAGETKGRAEEKTNQAMGTMGEKAREAKEKTYETGRAVKDKAHGAADSTKEW 60

Query: 61 ASDTAQGAREKGPIWK 77
          ASDTAQ  REK    K
Sbjct: 61 ASDTAQAGREKAQTGK 76

[Close]

BLAST of Bhi09G000043 vs. ExPASy TrEMBL
Match: A0A0A0K6E1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433250 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-24
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1   MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
           MASHNQSYRAGETKGRAEEKTN+ MG MG+KAREAKEKTYETGRAAREKAHGAADSTKEW
Sbjct: 49  MASHNQSYRAGETKGRAEEKTNQAMGAMGEKAREAKEKTYETGRAAREKAHGAADSTKEW 108

Query: 61  ASDTAQGAREKGPIWK 77
           ASD AQ  REK    K
Sbjct: 109 ASDAAQTGREKAQAGK 124

[Close]

BLAST of Bhi09G000043 vs. ExPASy TrEMBL
Match: A0A6J1D7P2 (late embryogenesis abundant protein Dc3-like OS=Momordica charantia OX=3673 GN=LOC111018398 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.1e-14
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGA------- 60
          MA+H+Q +RAGETKGRAEEKTN+ M TMG+KARE K+KTYETGRAAR+KA  +       
Sbjct: 1  MATHDQGFRAGETKGRAEEKTNQMMDTMGEKARETKDKTYETGRAARDKAQESKEQSGSY 60

Query: 61 ----ADSTKEWASDTAQGAREK 72
              A +TKE ASD AQ AREK
Sbjct: 61 LSEKAQATKEKASDAAQAAREK 82

[Close]

BLAST of Bhi09G000043 vs. ExPASy TrEMBL
Match: A0A072UG37 (Late embryogenesis abundant protein group 3, putative OS=Medicago truncatula OX=3880 GN=25491337 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1  MASHNQSYRAGETKGRAEEKTNETMGTMGDKAREAKEKTYETGRAAREKAHGAADSTKEW 60
          MASHNQSY+AGET GR EEK+N+ MG +GDKA+ AKEK  +T +AA+EK   AA +TKE 
Sbjct: 1  MASHNQSYKAGETMGRTEEKSNQMMGNVGDKAQAAKEKVQQTAQAAKEKTQQAAQATKEK 60

Query: 61 ASDTAQGAREKG 73
          A DT   AREKG
Sbjct: 61 AQDTTGQAREKG 72

The following BLAST results are available for this feature:

BLAST of Bhi09G000043 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15670.1	1.2e-13	54.93	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52690.1	2.0e-13	56.94	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52690.2	2.0e-13	56.94	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	6.5e-04	42.86	Late embryogenesis abundant protein (LEA) family protein	[more]

BLAST of Bhi09G000043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW12	1.7e-12	54.93	Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 ...	[more]
Q96270	2.8e-12	56.94	Late embryogenesis abundant protein 7 OS=Arabidopsis thaliana OX=3702 GN=LEA7 PE...	[more]
O49816	1.6e-10	52.11	Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
O49817	3.5e-10	50.70	Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
P13934	2.2e-09	46.34	Late embryogenesis abundant protein 76 OS=Brassica napus OX=3708 PE=2 SV=2	[more]

BLAST of Bhi09G000043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUB6	1.2e-24	84.21	Late embryogenesis abundant protein D-7 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3CEC9	1.2e-24	84.21	late embryogenesis abundant protein D-7 OS=Cucumis melo OX=3656 GN=LOC103499778 ...	[more]
A0A0A0K6E1	2.0e-24	85.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433250 PE=4 SV=1	[more]
A0A6J1D7P2	3.1e-14	63.41	late embryogenesis abundant protein Dc3-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A072UG37	1.3e-12	63.89	Late embryogenesis abundant protein group 3, putative OS=Medicago truncatula OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1430		coord: 7..73 e-value: 7.8E-6 score: 28.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	PANTHER	PTHR47372:SF23	BNAA03G57480D PROTEIN	coord: 1..75
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000043	Bhi09M000043	mRNA