Bhi09G000042 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000042
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	late embryogenesis abundant protein 1
Location	chr9: 912643 .. 913432 (-)
RNA-Seq Expression	Bhi09G000042
Synteny	Bhi09G000042

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCATTGTTTTATTCTTTCCTTTTCTCTATTTTTTGAGTTTAAAAAAACAAAAAAATTCAATTCAGAAATGGCAAGTCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAATTATTAATTAGCCTTTTTTTTTAAAAAAAATAAATAAAAAATTTCTCAAATAATTCATTGGAAAAAGAAAATTGTTTATGAAATTGAATAATTTTTATTTGGTGTATAATAATTATATATTTAAGAGTGGATTATAGTTATAATATTATGATCAGGTAAAGAAGGATGAGATTTTGAACCAAGCATCTCATGCAGCTCATGATTCCAAAGACAAAGCATCTACGCATGACCAATCGCCCGCCCAAACTGCCTCTAACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGGCATTTTTTTTTCAATTATTAATTATTTCATCATTCTTTTTCTATTATTATTATTTTTAAAACTAAGTAGGAAAATTAATTCAGTGTGGATTCAAAAATTTTGATAAAGAAGAATTTGTCCTAACACATATCGCCTAGTACGCGCAAGTTTTTGCCACCATACTATAATAATTGTAGAAATTAGATCTATAGATGATAAAAATTTCTACTAAATGTCCTTTTTTTTCCTGTGTGAAATATATATAGACCGGAGAGCAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCAGTGAAGAATACACTTGGAATGAACACTGATAACACTCCAAACACCAACAATCCTACCAATAACCCTACCAACAATCC

mRNA sequence

CTTTTCATTGTTTTATTCTTTCCTTTTCTCTATTTTTTGAGTTTAAAAAAACAAAAAAATTCAATTCAGAAATGGCAAGTCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAAAGAAGGATGAGATTTTGAACCAAGCATCTCATGCAGCTCATGATTCCAAAGACAAAGCATCTACGCATGACCAATCGCCCGCCCAAACTGCCTCTAACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACCGGAGAGCAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCAGTGAAGAATACACTTGGAATGAACACTGATAACACTCCAAACACCAACAATCCTACCAATAACCCTACCAACAATCC

Coding sequence (CDS)

ATGGCAAGTCATCAGGATATTAGCCACAAGGCTGGTGAGATTGTTGGCCAAGCTCAGGTAAAGAAGGATGAGATTTTGAACCAAGCATCTCATGCAGCTCATGATTCCAAAGACAAAGCATCTACGCATGACCAATCGCCCGCCCAAACTGCCTCTAACCTCAAGGACCAAGCTGCAAATTTCCTTCAACAGACCGGAGAGCAAGTGAAGAACATGGCACAAGGAGCAGCCGATGCAGTGAAGAATACACTTGGAATGAACACTGATAACACTCCAAACACCAACAATCCTACCAATAACCCTACCAACAATCC

Protein sequence

MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAANFLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPTNN

Homology

[Close]

BLAST of Bhi09G000042 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPA-----QTASNLK 60
           M+S Q +SH AGE+ GQ Q+KK+E LN  SHA + + D   TH QS       Q   +L 
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADH-HTHSQSQLHSEHDQNNPSLI 60

Query: 61  DQAANFLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTN 100
            QA++ +QQTG QVKNMAQGAADAVKNTLGM    +P TN+P++
Sbjct: 61  SQASSVIQQTGGQVKNMAQGAADAVKNTLGM----SPATNSPSS 99

[Close]

BLAST of Bhi09G000042 vs. TAIR 10
Match: AT1G52690.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 9.8e-07
Identity = 46/144 (31.94%), Postives = 59/144 (40.97%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEIL----------------------NQASHAAHDSKD 60
           MASHQ+ S+KAGE  G+AQ K  E +                       +A   A  +KD
Sbjct: 1   MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61  KASTHDQSPAQTASNLKDQAANF---------------------------------LQQT 90
           K S   Q+  + A   KD+  ++                                 L QT
Sbjct: 61  KTSQAAQTTQERAQESKDKTGSYMSETGEAIKNKAHDAAEYTKETAEAGKEKTSGILGQT 120

[Close]

BLAST of Bhi09G000042 vs. TAIR 10
Match: AT1G52690.2 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 9.8e-07
Identity = 46/144 (31.94%), Postives = 59/144 (40.97%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEIL----------------------NQASHAAHDSKD 60
           MASHQ+ S+KAGE  G+AQ K  E +                       +A   A  +KD
Sbjct: 1   MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61  KASTHDQSPAQTASNLKDQAANF---------------------------------LQQT 90
           K S   Q+  + A   KD+  ++                                 L QT
Sbjct: 61  KTSQAAQTTQERAQESKDKTGSYMSETGEAIKNKAHDAAEYTKETAEAGKEKTSGILGQT 120

[Close]

BLAST of Bhi09G000042 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.3e-06
Identity = 38/99 (38.38%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 11  AGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNL---------------- 70
           AG+  GQAQ K ++    A   A  + DK +   QS    A++L                
Sbjct: 8   AGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADGSHSAN 67

Query: 71  ------KDQAANFLQQTGEQVKNMAQGAADAVKNTLGMN 88
                 ++QAA    QTGE VKNMAQGA D VKN+LGMN
Sbjct: 68  KSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMN 106

[Close]

BLAST of Bhi09G000042 vs. TAIR 10
Match: AT1G15415.1 (The protein encoded by this gene was identified as a part of pollen proteome by mass spec analysis. It has weak homology to LEA (late embryo abundant) proteins. Encodes protein phosphatase 2A (PP2A) B'gamma subunit. Targeted to nucleus and cytosol. )

HSP 1 Score: 47.4 bits (111), Expect = 8.3e-06
Identity = 42/109 (38.53%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 1   MASHQD--ISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQA 60
           MAS QD   S +AG+IVGQA VK+++  N +                           QA
Sbjct: 1   MASGQDEEFSVRAGQIVGQAHVKENDCNNSS---------------------------QA 60

Query: 61  ANFLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPT----NNPTN 104
           + FLQQ GE+VK+MA  A++AVKN LG+N DN     N       NP N
Sbjct: 61  SGFLQQKGEKVKSMAHDASEAVKNKLGINNDNNEEYKNKNPLDKKNPNN 82

[Close]

BLAST of Bhi09G000042 vs. ExPASy Swiss-Prot
Match: O49817 (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.6e-07
Identity = 40/99 (40.40%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 5   QDISHKAGEIVGQAQVKKDEILNQASHAAHD----SKDKASTHDQSPAQTASNLKDQAAN 64
           Q    K  +    A+ K  +        A D    +K+K S   QS  +TA + KD +A 
Sbjct: 55  QAAKEKTQQTAQAAKDKTQQTTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAG 114

Query: 65  FLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTN 100
           FLQQTGE+ K MAQGA DAVK T GM  D+    + PTN
Sbjct: 115 FLQQTGEKAKGMAQGATDAVKQTFGMTNDDQDKDHFPTN 153

[Close]

BLAST of Bhi09G000042 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.1e-06
Identity = 38/98 (38.78%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 2   ASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAANF 61
           A+  +    A     + Q   +    +A      +++K S   QS  +TA + KD +A F
Sbjct: 78  AAKDETQQTAQAAKDKTQQTTEATKEKAQDTTGRAREKGSEMGQSTKETAQSGKDNSAGF 137

Query: 62  LQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTN 100
           LQQTGE+VK MAQGA DAVK T GM  D+    + PTN
Sbjct: 138 LQQTGEKVKGMAQGATDAVKQTFGMANDDKDKDHFPTN 175

[Close]

BLAST of Bhi09G000042 vs. ExPASy Swiss-Prot
Match: Q96270 (Late embryogenesis abundant protein 7 OS=Arabidopsis thaliana OX=3702 GN=LEA7 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-05
Identity = 46/144 (31.94%), Postives = 59/144 (40.97%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEIL----------------------NQASHAAHDSKD 60
           MASHQ+ S+KAGE  G+AQ K  E +                       +A   A  +KD
Sbjct: 1   MASHQEQSYKAGETRGKAQEKTGEAMGTMGDKTQAAKDKTQETAQSAQQKAHETAQSAKD 60

Query: 61  KASTHDQSPAQTASNLKDQAANF---------------------------------LQQT 90
           K S   Q+  + A   KD+  ++                                 L QT
Sbjct: 61  KTSQAAQTTQERAQESKDKTGSYMSETGEAIKNKAHDAAEYTKETAEAGKEKTSGILGQT 120

[Close]

BLAST of Bhi09G000042 vs. ExPASy Swiss-Prot
Match: P13934 (Late embryogenesis abundant protein 76 OS=Brassica napus OX=3708 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 23  DEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAANFLQQTGEQVKNMAQGAADAVKN 82
           + +  +A  AA  +K+ A    Q   +TA   KD+   FL QTGE VK MA GAADAVK+
Sbjct: 154 EAVKQKAQDAAQYTKETAQNAAQYTKETAEAGKDKTGGFLSQTGEHVKQMAMGAADAVKH 213

Query: 83  TLGMNTDNTPNTNNP 98
           T GM T+     + P
Sbjct: 214 TFGMATEEEDREHYP 228

[Close]

BLAST of Bhi09G000042 vs. ExPASy Swiss-Prot
Match: Q9LW12 (Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 5   QDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAANFLQQ 64
           ++   KAG  + +     + I N+A  AA  +K+ A    Q   +TA   +D+   FL Q
Sbjct: 113 REAKDKAGSYLSET---GEAIKNKAQDAAQYTKETAQGAAQYTKETAEAGRDKTGGFLSQ 172

Query: 65  TGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPT 103
           TGE VK MA GAADAVK+T GM T+     + P +  T
Sbjct: 173 TGEHVKQMAMGAADAVKHTFGMATEEEDKEHYPGSTTT 207

[Close]

BLAST of Bhi09G000042 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKAST--HDQSPAQTASNLKDQA 60
           MAS QDISH  GE+VGQAQVKKDE++NQA++AA ++KD AST     S AQTAS+LKDQA
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPTN 104
           ANFLQQTGEQVKNMAQGAA+AVKNTLGMNTD++ N    TNNPTN
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTN 105

[Close]

BLAST of Bhi09G000042 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-28
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MASHQD-ISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAA 60
           MASHQD +SHKAGE VGQAQVKKDE++NQ            + HDQS  QTAS+LKDQAA
Sbjct: 1   MASHQDNLSHKAGETVGQAQVKKDEMMNQ-----------PTAHDQSATQTASDLKDQAA 60

Query: 61  NFLQQTGEQVKNMAQGAADAVKNTLGMNTDNT--PNTNNPTNNPTNN 105
           NFLQQTGEQVKNMAQGAA+AVKNTLGMNTDNT  PN+NNPTNNPT N
Sbjct: 61  NFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTN 96

[Close]

BLAST of Bhi09G000042 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.0e-28
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MASHQD-ISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAA 60
           MASHQD +SHKAGE VGQAQVKKDE++NQ            + HDQS  QTAS+LKDQAA
Sbjct: 1   MASHQDNLSHKAGETVGQAQVKKDEMMNQ-----------PTAHDQSATQTASDLKDQAA 60

Query: 61  NFLQQTGEQVKNMAQGAADAVKNTLGMNTDNT--PNTNNPTNNPTNN 105
           NFLQQTGEQVKNMAQGAA+AVKNTLGMNTDNT  PN+NNPTNNPT N
Sbjct: 61  NFLQQTGEQVKNMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTN 96

[Close]

BLAST of Bhi09G000042 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKAST--HDQSPAQTASNLKDQA 60
           MAS QDISH  GE VGQAQVKKDE++NQA+++A ++KD AST     S AQTAS+LKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPTN 104
           ANFLQQTGEQVKNMAQGAA+AVKNTLGMNTD++ N    TNNPTN
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTN 105

[Close]

BLAST of Bhi09G000042 vs. ExPASy TrEMBL
Match: A0A6J1DEA7 (late embryogenesis abundant protein 7 OS=Momordica charantia OX=3673 GN=LOC111019645 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAAN 60
           MA  Q+ISHKAGE+VGQAQ+KKDE+LNQASH      + +STHDQS AQ AS+LK QAAN
Sbjct: 1   MAGRQEISHKAGEVVGQAQMKKDEVLNQASH-----DNASSTHDQS-AQNASDLKGQAAN 60

Query: 61  FLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPTN 104
           FLQQTGEQVKNMAQGAA+AVKNTLGMNTD   + N+P+NNP+N
Sbjct: 61  FLQQTGEQVKNMAQGAAEAVKNTLGMNTD---SPNSPSNNPSN 94

The following BLAST results are available for this feature:

BLAST of Bhi09G000042 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52680.1	4.7e-17	52.88	late embryogenesis abundant protein-related / LEA protein-related	[more]
AT1G52690.1	9.8e-07	31.94	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52690.2	9.8e-07	31.94	Late embryogenesis abundant protein (LEA) family protein	[more]
AT4G13560.1	1.3e-06	38.38	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G15415.1	8.3e-06	38.53	The protein encoded by this gene was identified as a part of pollen proteome by...	[more]

BLAST of Bhi09G000042 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49817	9.6e-07	40.40	Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
O49816	2.1e-06	38.78	Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
Q96270	1.4e-05	31.94	Late embryogenesis abundant protein 7 OS=Arabidopsis thaliana OX=3702 GN=LEA7 PE...	[more]
P13934	1.2e-04	42.67	Late embryogenesis abundant protein 76 OS=Brassica napus OX=3708 PE=2 SV=2	[more]
Q9LW12	2.6e-04	37.76	Late embryogenesis abundant protein 29 OS=Arabidopsis thaliana OX=3702 GN=LEA29 ...	[more]

BLAST of Bhi09G000042 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KJU5	1.6e-28	74.29	late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149466...	[more]
A0A5D3CF20	6.0e-28	74.77	Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CF46	6.0e-28	74.77	late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE...	[more]
A0A6J1HHY8	1.0e-27	73.33	late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]
A0A6J1DEA7	1.6e-25	72.82	late embryogenesis abundant protein 7 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..71
None	No IPR available	PANTHER	PTHR34191:SF9	F6D8.10	coord: 1..91
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000042	Bhi09M000042	mRNA