Bhi08G001815 (gene) Wax gourd (B227) v1

Overview
NameBhi08G001815
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionIntegrase, catalytic core
Locationchr8: 63003269 .. 63003538 (+)
RNA-Seq ExpressionBhi08G001815
SyntenyBhi08G001815
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAGAAGAAAAAAATGACGAAGACAAAAAAGAGCAACTACTATGTCCTTGGCATGGTGGTGCACATGATCGAGAACTACAATTTCGAAGACCAACCAGACAAAGAATACCAAATTCCAGGTACGCAAATACAACATTAGAAACATTTGAAGAACCAACGACATACGAAGAAGCGTCACAAAATATCCAATGGAGAAAGGCCATGGAAGAAGAAGTGGACGCATTGAGAAGACATAGACGTTGGGACATGGTGCCAGAAGGCTAA

mRNA sequence

ATGGAAGGAGAAGAAAAAAATGACGAAGACAAAAAAGAGCAACTACTATGTCCTTGGCATGGTGGTGCACATGATCGAGAACTACAATTTCGAAGACCAACCAGACAAAGAATACCAAATTCCAGGTACGCAAATACAACATTAGAAACATTTGAAGAACCAACGACATACGAAGAAGCGTCACAAAATATCCAATGGAGAAAGGCCATGGAAGAAGAAGTGGACGCATTGAGAAGACATAGACGTTGGGACATGGTGCCAGAAGGCTAA

Coding sequence (CDS)

ATGGAAGGAGAAGAAAAAAATGACGAAGACAAAAAAGAGCAACTACTATGTCCTTGGCATGGTGGTGCACATGATCGAGAACTACAATTTCGAAGACCAACCAGACAAAGAATACCAAATTCCAGGTACGCAAATACAACATTAGAAACATTTGAAGAACCAACGACATACGAAGAAGCGTCACAAAATATCCAATGGAGAAAGGCCATGGAAGAAGAAGTGGACGCATTGAGAAGACATAGACGTTGGGACATGGTGCCAGAAGGCTAA

Protein sequence

MEGEEKNDEDKKEQLLCPWHGGAHDRELQFRRPTRQRIPNSRYANTTLETFEEPTTYEEASQNIQWRKAMEEEVDALRRHRRWDMVPEG
Homology
BLAST of Bhi08G001815 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 54/89 (60.67%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 2   EGEEKNDEDKKEQL--LCPWHGGAHDRELQFRRPTRQRIPNSRYANTTLETFEEPTTYEE 61
           E EE NDED++EQ+    PW  G +++E Q RR TR R PNSRY N  L TFEEP TYEE
Sbjct: 491 EAEEGNDEDEEEQVRTQSPWQSGIYNQEPQLRRSTRIRKPNSRYVNAALATFEEPATYEE 550

Query: 62  ASQNIQWRKAMEEEVDALRRHRRWDMVPE 89
            SQ+IQWRKAMEEEVD L+++  WD+VP+
Sbjct: 551 VSQSIQWRKAMEEEVDTLKKNHTWDLVPK 579

BLAST of Bhi08G001815 vs. ExPASy TrEMBL
Match: A0A5D3DCW1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00060 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.0e-09
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 41  SRYANTTLETFEEPTTYEEASQNIQWRKAMEEEVDALRRHRRWDMVPE 89
           SR+ +  L TFEEP TYEE SQ+IQWRKAMEEEVD L+++  WD+VP+
Sbjct: 57  SRHVDAALATFEEPATYEETSQSIQWRKAMEEEVDTLKKNHTWDLVPK 104

BLAST of Bhi08G001815 vs. ExPASy TrEMBL
Match: A0A5A7UZQ7 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1041G00120 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 41  SRYANTTLETFEEPTTYEEASQNIQWRKAMEEEVDALRRHRRWDMVPE 89
           SR+ +  L TFEEP TYEE SQ+IQWRKAMEEEVD L+++  WD+VP+
Sbjct: 57  SRHVDEALATFEEPATYEETSQSIQWRKAMEEEVDTLKKNHTWDLVPK 104

BLAST of Bhi08G001815 vs. ExPASy TrEMBL
Match: A0A5A7T1U9 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00800 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 41  SRYANTTLETFEEPTTYEEASQNIQWRKAMEEEVDALRRHRRWDMV 87
           SRY +  L TFEEPTTYEE SQ+IQWRK MEEEV+AL+++  WD+V
Sbjct: 463 SRYVDAALATFEEPTTYEEVSQSIQWRKVMEEEVNALKKNHTWDLV 508

BLAST of Bhi08G001815 vs. ExPASy TrEMBL
Match: A0A6A3BVQ7 (Tir-nbs resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00017996pilonHSYRG00085 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 3   GEEKNDEDKKEQLLCPWHGGAHDR---------------ELQFRRPTRQRIPNSRYANTT 62
           G+   D+ ++ +   PW  G + +               + Q RR TR R PN +YAN T
Sbjct: 756 GDPNGDDVEQRRTQNPWQTGVYQQPNEEGGPSETEESIPQSQLRRSTRIRRPNPKYANAT 815

Query: 63  -LETFEEPTTYEEASQNIQWRKAMEEEVDALRRHRRWDMVPE 89
            +E   EP T+EEASQ+ +W  AM+EE+DAL++++ WD+VP+
Sbjct: 816 IIEEATEPETFEEASQSSEWMTAMKEEIDALQQNKTWDLVPK 857

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYD21.8e-2060.67Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5D3DCW17.0e-0964.58Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7UZQ79.1e-0964.58Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5A7T1U91.5e-0867.39Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6A3BVQ71.5e-0837.25Tir-nbs resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00017996pi... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001815Bhi08M001815mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding