Bhi08G001801 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001801
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem I iron-sulfur center
Location	chr8: 62475113 .. 62478421 (-)
RNA-Seq Expression	Bhi08G001801
Synteny	Bhi08G001801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTAAGACCGGGTAAATGCTGGGGACATAGTCTTGCAAGATGGAATTCAGTCCTAAGTACTGATTCGTAGTGTTAGACAAGGGGCCTCGCTTTCTCTATGATTGGGAGGGGCTCAATTTATTGGTAGGACCATAAACTAATTATTCATTAGTGGATCAGTGGAGACTTAAGGTACAAGATGTATTACAGGGGTAAAACAGTAATTTTGACCCAGTTGTAAATACGAACAACCTGTGGATGATCGACTTACTGATCATGGTTAAATCAAGTGGACAGAAATATATCTACAGTGAGAAGAGTGCATCTACAGGGCTTTAGTAGAGTGTCCTGGTAGTTAATAAATGATGGTTAATTCGGTTAAAAGAGTTTAGCCAGTTAATCTCAGATCATTGGAGCTCATGATTTGTATGTCCATTAGGTCTCCCTGCTAGCTCATATCAGATTAAACCTTAGAACAACGCGACGAGTGAATTTGAAGTGTTCATATTCGAATTAGGGAATAATGTTAAATATATGTGATATATTTAACAGCGTATTATTCAGTTGGAAATTGAATGATAAAGAGATAATTGGAGATATTTAAATAAGATTTAAATATCAAAACTATGAATGAGGATTCATCAGGATTTTAGTGTTGAGTATAATAATTGAATATTAAATTAAATTAATAAATTTTTTTAATGAATTATTTAATATTAATTTGATTTAAAATTAATTATTTGAATTAATTTTGAATTGAATGGAATCAATCAAAGTTGGTCAAAGTTAAATGTTGACTTCACCAAGCTTTGAAGGTCAAAGGATAAAAGTTGACTTCACTAAGTGGAAAATTCCAAAATTAGTTTTAAATTAATTTTCAATTAAAATTGTATAAATTAAAATTTGACTAAAGTTAAATATTGACTTCAAAATAGTCAAAAGTCAAAATGTTGACTTCACTTAGTGGAAAGATCAAAGAATGATTTTTAGTGGAAAAATCTAACTTTTAGTGAATTAATGAGTAATTCATTTTGCAAAGTGTTGATTCCACAAAACGTCACTTATGCCACTAAATTGAGTGCATTTTGAAGTGTCAAAATTTGGTTAACTCAAATTTGGATGAAGTGCATGTAATTGCTCTATATGCTTTGATAAAGATTAAACTACTTGGCCCTTTTGGAGATTTTCAAGTTAATTAAAAAAAAAAAAATCTTCTTGGCAACTTAGAGATTCTAAAAGAGTTTTAGAACTTAAATACTCAATTCTCTCTCAATTTATATTGTAAGTTCATCCCTAATTTAGTCACTCATCGAATCCCACCATCTCATTCTAAAGTTGGAGAATAGTCAGGAAGACTTTCCTTATGATTCACAGCTGGTTCGTGAGAAGATTGGAGCGAAATTGATGGTCAATTTGAGCTACAAAGATTGTAACTCAAACCTTAATTTCAAAGTTATTTGCATGCATGTTTTATCTTTAACATTAATGAAATTTAGAGTGTTTAAGATCCAAATTGTTTACGCATGCACGTTGTTTATTCTTACAGATAATTCCTCCTGTAATAGAAAGAATAAAGAATAATAAATTTTGTTAATATGAGGCCTTATAAAATGGGGCCAAATAAGTATAACTTAACCAACCTAATATCATAATGTATAAAATTATATTAATATATATCAATGTGTTGAAAAGCTATATACATCTTCCGACATGAGGTTCCTGGTCTGCCACTATCTATGTCTGAAGCAGCCTTCTTTGAGGGGGTTTGTTGCTTTAGAAGGGTATTTAAGAGATGTATTGGGACGAGAGAGGACACTTTGGTCTTTCATCACCCTTGGATCCCAAGAGAGAGGACCTTCTTCAAACCCACCACTGCACTCCTACATCTACTAAGGTTAATTATTTAATAATGTGTGATTTGATTTTAGAGAACGATCAATGGAAACTTTCTAACATGGAAAACATTCTTGGGGTTGAAGACATAAACGCTATATTCTTTGTTGAAGTAGGTGAACCAAAAACCTTCTGCTCCAGTCTGAAATTCCAACTCTATCTCCAACTCTCTGTTCTTCCAGCTTCTATTCAAACAAACAGAAAGTAGTTAACAAGTTGTTACAAACTGTTTTTGGTTTTCAACTATCTATGTAAAATACTACAGTATAAAGAATAAATGTAAGCTTGTATTCATTTTTCCTAATCAGAGAGGGAGGGGGGCAAATTGTGAGAACTTATCTTAATGTTTTTGTTTTCTTAAAGTCCTTAAATGAAAGCTTGAAGATATACTCTAAAGTGGATATAGGTAGAGCTAATCACCGAACCACTATATTCCATTGTGTCCTTTTCTCTTTTTCTTTGATTTATAGAACCATCTGATTTGATTCGTTCTCAATAGCCATGTGATGATCATCTTAGGGTGATCCTTTTGTCGACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATCAGAAGTGATCTATTACATTTTTGTTCATATTGAAATGAATCGGAACTGATAAGGAGTTGGTCAATCATGCTCGAACATGTACTTATTATAAGTGCCTATTTATTTTCTATCGGTATCTATGGATTGATCATGAGCCGAAATATGGTTAGGGCCCTTATGTGTCTTGAGCTTATACTGAATGCAGTGAATATGAATTTCGTAACATTTTCTGATTTTTTTGATAGTCGCCAATTAAAAGGGAATATTTTCTCAATTTTTGTTATAGCTATTGCAGCTACTGAAGCAGCTATTGGCCCAGCTATTGTTTCGTCAATTTATCGTAATAGAAAATCAACTCGTATCAATCAATCGAATTTGTTGAATAAGTAGTATTTATTTCTCAGATAAATTATGATATTCATCAAGTAAAATTATCTGTATGATACGTAATCCATGATCATGTTTGCGAAAACGTAAAAAATCAAAGTATCTTGGCCCTATCGCATAAGTTAATCTGAAAGTAGGTAGAATGATTATAAAAATTCTGATAAATTATTGACTCATCTGGTATCTAAATATATAATTTATTTACAAATTTACTCGATCGAAAATTTATAGTCTTAAAAAAAATTATAGATCCAATGTCACATTCAGTAAAGATTTATGATACATGTATAGGCTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCCCAAAGAACAGAAGATTGTGTTGGTTGTAAGAGATGTGAATCTGCATGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTTAGTCAG

mRNA sequence

GGCTGAAGGTAAAGATTTATGATACATGTATAGGCTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCCCAAAGAACAGAAGATTGTGTTGGTTGTAAGAGATGTGAATCTGCATGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTTAGTCAG

Coding sequence (CDS)

GGCTGAAGGTAAAGATTTATGATACATGTATAGGCTGTACTCAATGTGTCCGAGCTTGCCCCACAGATGTATTAGAAATGATACCTTGGGGCGGATGTAAAGCTAAGCAAATAGCTTCGGCCCAAAGAACAGAAGATTGTGTTGGTTGTAAGAGATGTGAATCTGCATGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTTAGTCAG

Protein sequence

LKVKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLSQ

Homology

[Close]

BLAST of Bhi08G001801 vs. TAIR 10
Match: ATCG01060.1 (iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding )

HSP 1 Score: 163.3 bits (412), Expect = 7.9e-41
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy Swiss-Prot
Match: P42046 (Photosystem I iron-sulfur center OS=Cucumis sativus OX=3659 GN=psaC PE=1 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-40
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy Swiss-Prot
Match: P10793 (Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=1 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-40
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy Swiss-Prot
Match: A4GGE7 (Photosystem I iron-sulfur center OS=Phaseolus vulgaris OX=3885 GN=psaC PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-40
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy Swiss-Prot
Match: Q3BAH7 (Photosystem I iron-sulfur center OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=psaC PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 5.0e-40
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGLS
Sbjct: 65 VRVYLWHETTRSMGLS 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy Swiss-Prot
Match: A4QJG7 (Photosystem I iron-sulfur center OS=Aethionema cordifolium OX=434059 GN=psaC PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-39
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPW GCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy TrEMBL
Match: H2FB84 (Photosystem I iron-sulfur center OS=Camassia scilloides OX=39524 GN=psaC PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGLS
Sbjct: 65 VRVYLWHETTRSMGLS 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy TrEMBL
Match: A0A1L5JAJ5 (Photosystem I iron-sulfur center OS=Chlorogalum pomeridianum OX=50240 GN=psaC PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGLS
Sbjct: 65 VRVYLWHETTRSMGLS 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy TrEMBL
Match: A0A218KGA0 (Photosystem I iron-sulfur center OS=Cucumis sativus var. hardwickii OX=319220 GN=psaC PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.3e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy TrEMBL
Match: D5MAH2 (Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.3e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

[Close]

BLAST of Bhi08G001801 vs. ExPASy TrEMBL
Match: A0A410HFC6 (Photosystem I iron-sulfur center OS=Trichosanthes kirilowii OX=3677 GN=psaC PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.3e-38
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 3  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAQRTEDCVGCKRCESACPTDFLS 62
          VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASA RTEDCVGCKRCESACPTDFLS
Sbjct: 5  VKIYDTCIGCTQCVRACPTDVLEMIPWGGCKAKQIASAPRTEDCVGCKRCESACPTDFLS 64

Query: 63 VRVYLWHETTRSMGLS 79
          VRVYLWHETTRSMGL+
Sbjct: 65 VRVYLWHETTRSMGLA 80

The following BLAST results are available for this feature:

BLAST of Bhi08G001801 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01060.1	7.9e-41	96.05	iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding	[more]

BLAST of Bhi08G001801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42046	1.7e-40	97.37	Photosystem I iron-sulfur center OS=Cucumis sativus OX=3659 GN=psaC PE=1 SV=3	[more]
P10793	1.7e-40	97.37	Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=1 SV=3	[more]
A4GGE7	1.7e-40	97.37	Photosystem I iron-sulfur center OS=Phaseolus vulgaris OX=3885 GN=psaC PE=3 SV=1	[more]
Q3BAH7	5.0e-40	97.37	Photosystem I iron-sulfur center OS=Phalaenopsis aphrodite subsp. formosana OX=3...	[more]
A4QJG7	1.1e-39	96.05	Photosystem I iron-sulfur center OS=Aethionema cordifolium OX=434059 GN=psaC PE=...	[more]

BLAST of Bhi08G001801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
H2FB84	2.8e-38	98.68	Photosystem I iron-sulfur center OS=Camassia scilloides OX=39524 GN=psaC PE=3 SV...	[more]
A0A1L5JAJ5	2.8e-38	98.68	Photosystem I iron-sulfur center OS=Chlorogalum pomeridianum OX=50240 GN=psaC PE...	[more]
A0A218KGA0	6.3e-38	97.37	Photosystem I iron-sulfur center OS=Cucumis sativus var. hardwickii OX=319220 GN...	[more]
D5MAH2	6.3e-38	97.37	Photosystem I iron-sulfur center OS=Pisum sativum OX=3888 GN=psaC PE=3 SV=1	[more]
A0A410HFC6	6.3e-38	97.37	Photosystem I iron-sulfur center OS=Trichosanthes kirilowii OX=3677 GN=psaC PE=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017491	Photosystem I protein PsaC	TIGRFAM	TIGR03048	TIGR03048	coord: 2..78 e-value: 1.1E-52 score: 174.1
None	No IPR available	PFAM	PF14697	Fer4_21	coord: 7..59 e-value: 1.4E-10 score: 41.2
None	No IPR available	GENE3D	3.30.70.20		coord: 1..79 e-value: 5.2E-37 score: 127.3
None	No IPR available	PIRSR	PIRSR000068-1	PIRSR000068-1	coord: 6..63 e-value: 4.0E-7 score: 28.3
None	No IPR available	PANTHER	PTHR24960:SF79	PHOTOSYSTEM I IRON-SULFUR CENTER	coord: 3..69
None	No IPR available	PANTHER	PTHR24960	PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED	coord: 3..69
None	No IPR available	SUPERFAMILY	54862	4Fe-4S ferredoxins	coord: 5..63
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 46..57
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 9..20
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 1..29 score: 9.936176
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 37..66 score: 8.70966

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001801	Bhi08M001801	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0042651	thylakoid membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding