Bhi08G001768 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001768
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Villin-3
Location	chr8: 61698049 .. 61698227 (+)
RNA-Seq Expression	Bhi08G001768
Synteny	Bhi08G001768

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGATTTATCAAACAATACTTTATATTCAGGAATTTATTGCCAGCCAGAATAAGCCAAAGGCAACTCGTGTGAATCGGGTTATACAAGGCTATGAAACACATTCTTTTAAGTCCAACTTCGAGTCTTGGCCAGTTGGATCAGTGACTACAGGTGCTGAGGAAGGAAGAGGAAA

mRNA sequence

ATGGACAAGATTTATCAAACAATACTTTATATTCAGGAATTTATTGCCAGCCAGAATAAGCCAAAGGCAACTCGTGTGAATCGGGTTATACAAGGCTATGAAACACATTCTTTTAAGTCCAACTTCGAGTCTTGGCCAGTTGGATCAGTGACTACAGGTGCTGAGGAAGGAAGAGGAAA

Coding sequence (CDS)

ATGGACAAGATTTATCAAACAATACTTTATATTCAGGAATTTATTGCCAGCCAGAATAAGCCAAAGGCAACTCGTGTGAATCGGGTTATACAAGGCTATGAAACACATTCTTTTAAGTCCAACTTCGAGTCTTGGCCAGTTGGATCAGTGACTACAGGTGCTGAGGAAGGAAGAGGAAA

Protein sequence

MDKIYQTILYIQEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG

Homology

[Close]

BLAST of Bhi08G001768 vs. TAIR 10
Match: AT2G41740.1 (villin 2 )

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-16
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EF+AS+N+PKAT V RVIQGYE+HSFKSNF+SWP GS T G EEGRG
Sbjct: 309 EEFLASENRPKATHVTRVIQGYESHSFKSNFDSWPSGSATPGNEEGRG 356

[Close]

BLAST of Bhi08G001768 vs. TAIR 10
Match: AT3G57410.1 (villin 3 )

HSP 1 Score: 79.7 bits (195), Expect = 8.6e-16
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           ++F+AS+N+PKATR+ RVIQGYE HSFKSNF+SWP GS T   EEGRG
Sbjct: 311 EDFVASENRPKATRITRVIQGYEPHSFKSNFDSWPSGSATPANEEGRG 358

[Close]

BLAST of Bhi08G001768 vs. TAIR 10
Match: AT4G30160.1 (villin 4 )

HSP 1 Score: 47.0 bits (110), Expect = 6.2e-06
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +E I S  +PK+  + R+I+G+ET  F+S FESW   + TT +E+GRG
Sbjct: 312 EEMIRSSERPKSQMI-RIIEGFETVPFRSKFESWTQETNTTVSEDGRG 358

[Close]

BLAST of Bhi08G001768 vs. TAIR 10
Match: AT4G30160.2 (villin 4 )

HSP 1 Score: 47.0 bits (110), Expect = 6.2e-06
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +E I S  +PK+  + R+I+G+ET  F+S FESW   + TT +E+GRG
Sbjct: 312 EEMIRSSERPKSQMI-RIIEGFETVPFRSKFESWTQETNTTVSEDGRG 358

[Close]

BLAST of Bhi08G001768 vs. TAIR 10
Match: AT5G57320.1 (villin, putative )

HSP 1 Score: 46.2 bits (108), Expect = 1.0e-05
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EF  S   PK+  V+ V++GYET  F+S F+SWP  S     ++GRG
Sbjct: 312 EEFFRSSEPPKSNLVS-VMEGYETVMFRSKFDSWPASSTIAEPQQGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy Swiss-Prot
Match: O81644 (Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-15
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EF+AS+N+PKAT V RVIQGYE+HSFKSNF+SWP GS T G EEGRG
Sbjct: 309 EEFLASENRPKATHVTRVIQGYESHSFKSNFDSWPSGSATPGNEEGRG 356

[Close]

BLAST of Bhi08G001768 vs. ExPASy Swiss-Prot
Match: O81645 (Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           ++F+AS+N+PKATR+ RVIQGYE HSFKSNF+SWP GS T   EEGRG
Sbjct: 311 EDFVASENRPKATRITRVIQGYEPHSFKSNFDSWPSGSATPANEEGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy Swiss-Prot
Match: Q10L71 (Villin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN2 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 11  IQEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSV-TTGAEEGRG 60
           ++EFIA+QN+PK TRV RVIQGYE H+FKS FESWPV S  + GAEEGRG
Sbjct: 311 VEEFIATQNRPKTTRVTRVIQGYENHTFKSKFESWPVNSAGSAGAEEGRG 360

[Close]

BLAST of Bhi08G001768 vs. ExPASy Swiss-Prot
Match: O65570 (Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.7e-05
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +E I S  +PK+  + R+I+G+ET  F+S FESW   + TT +E+GRG
Sbjct: 312 EEMIRSSERPKSQMI-RIIEGFETVPFRSKFESWTQETNTTVSEDGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy Swiss-Prot
Match: Q9LVC6 (Villin-5 OS=Arabidopsis thaliana OX=3702 GN=VLN5 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-04
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EF  S   PK+  V+ V++GYET  F+S F+SWP  S     ++GRG
Sbjct: 312 EEFFRSSEPPKSNLVS-VMEGYETVMFRSKFDSWPASSTIAEPQQGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy TrEMBL
Match: A0A1S3B6V5 (villin-3 OS=Cucumis melo OX=3656 GN=LOC103486814 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EFIASQN+PKATRV RVIQGYETHSFKSNFESWPVGSVTTGAEEGRG
Sbjct: 311 EEFIASQNRPKATRVTRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy TrEMBL
Match: A0A5D3DPM9 (Villin-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EFIASQN+PKATRV RVIQGYETHSFKSNFESWPVGSVTTGAEEGRG
Sbjct: 311 EEFIASQNRPKATRVTRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy TrEMBL
Match: A0A5A7TNP2 (Villin-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00120 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EFIASQN+PKATRV RVIQGYETHSFKSNFESWPVGSVTTGAEEGRG
Sbjct: 324 EEFIASQNRPKATRVTRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 371

[Close]

BLAST of Bhi08G001768 vs. ExPASy TrEMBL
Match: A0A0A0LF74 (HP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812240 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EFIASQN+PKATRV RVIQGYETHSFKSNFESWPVGSVTTGAEEGRG
Sbjct: 311 EEFIASQNRPKATRVTRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 358

[Close]

BLAST of Bhi08G001768 vs. ExPASy TrEMBL
Match: A0A6J1J3Y3 (villin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111481568 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-17
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 12  QEFIASQNKPKATRVNRVIQGYETHSFKSNFESWPVGSVTTGAEEGRG 60
           +EFIASQN+PKATRV RVIQGYETHSFKSNFESWPVGS TTGAEEGRG
Sbjct: 311 EEFIASQNRPKATRVTRVIQGYETHSFKSNFESWPVGSATTGAEEGRG 358

The following BLAST results are available for this feature:

BLAST of Bhi08G001768 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41740.1	1.7e-16	75.00	villin 2	[more]
AT3G57410.1	8.6e-16	70.83	villin 3	[more]
AT4G30160.1	6.2e-06	45.83	villin 4	[more]
AT4G30160.2	6.2e-06	45.83	villin 4	[more]
AT5G57320.1	1.0e-05	43.75	villin, putative	[more]

BLAST of Bhi08G001768 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81644	2.4e-15	75.00	Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2	[more]
O81645	1.2e-14	70.83	Villin-3 OS=Arabidopsis thaliana OX=3702 GN=VLN3 PE=1 SV=2	[more]
Q10L71	3.5e-14	72.00	Villin-2 OS=Oryza sativa subsp. japonica OX=39947 GN=VLN2 PE=2 SV=1	[more]
O65570	8.7e-05	45.83	Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1	[more]
Q9LVC6	1.5e-04	43.75	Villin-5 OS=Arabidopsis thaliana OX=3702 GN=VLN5 PE=2 SV=1	[more]

BLAST of Bhi08G001768 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6V5	2.7e-17	93.75	villin-3 OS=Cucumis melo OX=3656 GN=LOC103486814 PE=4 SV=1	[more]
A0A5D3DPM9	2.7e-17	93.75	Villin-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005900 PE=4...	[more]
A0A5A7TNP2	2.7e-17	93.75	Villin-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00120 PE=4 ...	[more]
A0A0A0LF74	2.7e-17	93.75	HP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G812240 PE=4 SV=...	[more]
A0A6J1J3Y3	7.8e-17	91.67	villin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111481568 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 3..55 e-value: 4.4E-6 score: 28.5
IPR007122	Villin/Gelsolin	PANTHER	PTHR11977	VILLIN	coord: 12..59
IPR030009	Villin-2, plant	PANTHER	PTHR11977:SF114	BNAA03G19590D PROTEIN	coord: 12..59
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 8..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001768	Bhi08M001768	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
biological_process	GO:0051693	actin filament capping
biological_process	GO:0051014	actin filament severing
molecular_function	GO:0051015	actin filament binding