Bhi08G001622 (gene) Wax gourd (B227) v1

Overview
NameBhi08G001622
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionIntegrase catalytic domain-containing protein
Locationchr8: 57508380 .. 57508870 (+)
RNA-Seq ExpressionBhi08G001622
SyntenyBhi08G001622
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTAACGTTAGTGGTACACTATTGATGGAGGGACAAGGAATGGACTCCATCTATATCATGTTACTAGAGGGCACCTACGTGGATAAGCAAAAGCACCCAAGGACAAAGTGCATTGTTTCTGTTGGTGGACAATGCTATACATCGAGAAATGTTACAGTTGATGAAACATTGTCATGGCAGGCACCCGAATCAGAAAAAATACCTAAGGATGAGAAGACTTTCAAAGAAGGAACAAAAGAGGAGATAAGCCAAGTGCAAGAGACTCCAATGGAAGGAGAAGAAAAAAATGACGAAGACGAGAAAGAGCAACTAAGGACACTGAGTCCTTGGCATGGTGGTGCACGTGATCGAGAACTACAATTACGGAGATTAACCAGACAAAGAATACCAAATTTTAGGTATACAAATGCAACATTAGAAATATTTGAAGAACCAACGACATATGAAGAAGTTTCACAAAATATCCAATGGAGAAAGGCCATGAAATAA

mRNA sequence

ATCTTAACGTTAGTGGTACACTATTGATGGAGGGACAAGGAATGGACTCCATCTATATCATGTTACTAGAGGGCACCTACGTGGATAAGCAAAAGCACCCAAGGACAAAGTGCATTGTTTCTGTTGGTGGACAATGCTATACATCGAGAAATGTTACAGTTGATGAAACATTGTCATGGCAGGCACCCGAATCAGAAAAAATACCTAAGGATGAGAAGACTTTCAAAGAAGGAACAAAAGAGGAGATAAGCCAAGTGCAAGAGACTCCAATGGAAGGAGAAGAAAAAAATGACGAAGACGAGAAAGAGCAACTAAGGACACTGAGTCCTTGGCATGGTGGTGCACGTGATCGAGAACTACAATTACGGAGATTAACCAGACAAAGAATACCAAATTTTAGGTATACAAATGCAACATTAGAAATATTTGAAGAACCAACGACATATGAAGAAGTTTCACAAAATATCCAATGGAGAAAGGCCATGAAATAA

Coding sequence (CDS)

ATCTTAACGTTAGTGGTACACTATTGATGGAGGGACAAGGAATGGACTCCATCTATATCATGTTACTAGAGGGCACCTACGTGGATAAGCAAAAGCACCCAAGGACAAAGTGCATTGTTTCTGTTGGTGGACAATGCTATACATCGAGAAATGTTACAGTTGATGAAACATTGTCATGGCAGGCACCCGAATCAGAAAAAATACCTAAGGATGAGAAGACTTTCAAAGAAGGAACAAAAGAGGAGATAAGCCAAGTGCAAGAGACTCCAATGGAAGGAGAAGAAAAAAATGACGAAGACGAGAAAGAGCAACTAAGGACACTGAGTCCTTGGCATGGTGGTGCACGTGATCGAGAACTACAATTACGGAGATTAACCAGACAAAGAATACCAAATTTTAGGTATACAAATGCAACATTAGAAATATTTGAAGAACCAACGACATATGAAGAAGTTTCACAAAATATCCAATGGAGAAAGGCCATGAAATAA

Protein sequence

LNVSGTLLMEGQGMDSIYIMLLEGTYVDKQKHPRTKCIVSVGGQCYTSRNVTVDETLSWQAPESEKIPKDEKTFKEGTKEEISQVQETPMEGEEKNDEDEKEQLRTLSPWHGGARDRELQLRRLTRQRIPNFRYTNATLEIFEEPTTYEEVSQNIQWRKAMK
Homology
BLAST of Bhi08G001622 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.2e-36
Identity = 83/127 (65.35%), Postives = 96/127 (75.59%), Query Frame = 0

Query: 36  KCIVSVGGQCYTSRNVTVDETLSWQAPESEKIPKDEKTFKEGTKEEISQVQETPMEGEEK 95
           +C+    G+CYTSRNV  DE  SW  PESEK  K+EK+FKEG+KEEISQVQ+ P E EE 
Sbjct: 436 RCVDPTSGRCYTSRNVIFDEASSWWIPESEKSTKNEKSFKEGSKEEISQVQQAPTEAEEG 495

Query: 96  NDEDEKEQLRTLSPWHGGARDRELQLRRLTRQRIPNFRYTNATLEIFEEPTTYEEVSQNI 155
           NDEDE+EQ+RT SPW  G  ++E QLRR TR R PN RY NA L  FEEP TYEEVSQ+I
Sbjct: 496 NDEDEEEQVRTQSPWQSGIYNQEPQLRRSTRIRKPNSRYVNAALATFEEPATYEEVSQSI 555

Query: 156 QWRKAMK 163
           QWRKAM+
Sbjct: 556 QWRKAME 562

BLAST of Bhi08G001622 vs. ExPASy TrEMBL
Match: A0A0A0K4U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-15
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   LNVSGTLLMEGQGMDSIYIMLLEGTYVDKQKHPRTKCIVSVGGQCYTSRNVTVDETLSWQ 60
           L  SG LLME Q MDSIYIML E  Y+D Q+H  T+CI S   QC+     T++E LSW+
Sbjct: 34  LEASGKLLMERQEMDSIYIMLAEDAYMDMQRHLVTECIDSTDEQCH-----TINEALSWK 93

Query: 61  APESEKIPKDEKTFKEGTKEEISQV 86
           A +SEK PKDE++F+EG+K+EIS+V
Sbjct: 94  ALDSEKTPKDERSFEEGSKDEISRV 113

BLAST of Bhi08G001622 vs. ExPASy TrEMBL
Match: A0A6A3BVQ7 (Tir-nbs resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00017996pilonHSYRG00085 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-11
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 0

Query: 36  KCIVSVGGQCYTSRNVTVDETLSWQAPESEKIPKDEKTFKEGTKEEIS----QVQETPME 95
           KC   + G+CYTSRNV  DE  SW + E E +P D + F +  ++++     Q+Q +  E
Sbjct: 696 KCCDPISGRCYTSRNVIFDEASSWWSSEKEVLP-DSREFGDKLQQKMGEHDVQLQTSSDE 755

Query: 96  GEEKNDEDEKEQLRTLSPWHGGARDR---------------ELQLRRLTRQRIPNFRYTN 155
             + N  D+ EQ RT +PW  G   +               + QLRR TR R PN +Y N
Sbjct: 756 SGDPNG-DDVEQRRTQNPWQTGVYQQPNEEGGPSETEESIPQSQLRRSTRIRRPNPKYAN 815

Query: 156 AT-LEIFEEPTTYEEVSQNIQWRKAMK 163
           AT +E   EP T+EE SQ+ +W  AMK
Sbjct: 816 ATIIEEATEPETFEEASQSSEWMTAMK 840

BLAST of Bhi08G001622 vs. ExPASy TrEMBL
Match: A0A6A2YCQ3 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111810pilonHSYRG00151 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 57/147 (38.78%), Postives = 78/147 (53.06%), Query Frame = 0

Query: 36  KCIVSVGGQCYTSRNVTVDETLSWQAPESEKIPKDEKTFKEGTKEEIS----QVQETPME 95
           KC   + G+CYTSRNV  DE  SW + E E +P D + F +  ++++     Q+Q +  E
Sbjct: 692 KCCDPISGRCYTSRNVVFDEASSWWSSEKEVLP-DSREFGDKLQQKMGEHDVQLQTSSDE 751

Query: 96  GEEKNDEDEKEQLRTLSPW----------HGGARDRE-----LQLRRLTRQRIPNFRYTN 155
            E+ N  D+ EQ  T +PW           GG  + E      QLRR TR R PN +Y N
Sbjct: 752 SEDPNG-DDVEQRMTQNPWKTGVYQQPNEEGGPSETEESIPQSQLRRSTRIRRPNPKYAN 811

Query: 156 AT-LEIFEEPTTYEEVSQNIQWRKAMK 163
           A  +E   EP T+EE S++ QW  AMK
Sbjct: 812 AAIIEEATEPETFEEASKSSQWMTAMK 836

BLAST of Bhi08G001622 vs. ExPASy TrEMBL
Match: A0A6A2XV20 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111402pilonHSYRG01323 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 55/147 (37.41%), Postives = 77/147 (52.38%), Query Frame = 0

Query: 36  KCIVSVGGQCYTSRNVTVDETLSWQAPESEKIPKDEKTFKEGTKEEIS----QVQETPME 95
           KC   + G+CYTSRNV  DE  SW + E E +P D + F +  ++++     Q+Q +  E
Sbjct: 818 KCCDPISGRCYTSRNVVFDEASSWWSSEKEVLP-DSREFGDKLQQKMGEHDVQLQTSSDE 877

Query: 96  GEEKNDEDEKEQLRTLSPWHGGARDR---------------ELQLRRLTRQRIPNFRYTN 155
            E+ N  D+ EQ  T +PW  G   +               + QLRR TR R PN +Y N
Sbjct: 878 SEDPNG-DDVEQRVTQNPWQTGVYQQPNEEDGPSETEESIPQSQLRRSTRIRRPNPKYAN 937

Query: 156 AT-LEIFEEPTTYEEVSQNIQWRKAMK 163
           A  +E   EP T+EE S++ QW  AMK
Sbjct: 938 AAIIEEATEPETFEEASKSSQWMTAMK 962

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYD23.2e-3665.35Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0K4U24.1e-1556.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1[more]
A0A6A3BVQ73.6e-1138.10Tir-nbs resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00017996pi... [more]
A0A6A2YCQ31.0e-1038.78Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=... [more]
A0A6A2XV201.8e-1037.41Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111402pilon... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001622Bhi08M001622mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding