Bhi08G001554 (gene) Wax gourd (B227) v1

Overview
NameBhi08G001554
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptionheterogeneous nuclear ribonucleoprotein U-like protein 1
Locationchr8: 54777356 .. 54778934 (-)
RNA-Seq ExpressionBhi08G001554
SyntenyBhi08G001554
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGCCAATTATATCTTGCCCACTAGCAAGGACATGCCTGGATCGGAAGAATATTTTGATGAGGTAGTTACACCTACGCCCGACGTGGCTATTAAGGGTTTCTGTGTAAGTGTAATGATGTAGATATCATAATATGTCCTCTTTTTGTTAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGATGCTTGGATGGGATGAAACGTGCTCTACCATCTGAATCACGTGACAGCAATACATCATTTTCTAAAGCTAGTACTGCTCCTCTTGTTTTGCCCTCATCTCGAGATCAAGGTGCTTTCCGCTTCTTGTCTGGCCTCTCTGATTGAACAGTGGACGTTTTCTTTTATATATAGTTTTAATAATCATGCATCCATTTGACTTGGTGATTGTTATATCTATAGCATAGCCCTTATTTTTCTCATCTTCCAGCTACCTTTGGACACCATTCATCCAACCAGTTTACATGAAGATTCCTTCTTTTACTTTTGGATGTGTAAAATGAATCTCTCTTTTTTTTTTCAACATGTTTTCAATTCTCAGTAAAGCATACATACACAGTGACGTGATTCTCATGTCATATAAATGAGATAAGATGAGTACAAAATACTGTCAATCTGAAAATCTTTCCATGTTTCACCCATATGCTATATGAATTGAAACACTATATTAAGCTTGCCAGTCACCGTGGCTGCATCTTGACTTTATTTTGACGTCTAGATTCACACTCTTAACATTCTTTTTCAGGTCGACGTGGTATACCAGATGCTGGACGATATGGAAGTCCAAGATTTATTTCTGAAGTACATCAAGAAAATATGATTTCTCCTTTACCAAGATTTGTTCCCCCTCACAGACGATACGAGAATTTGATTAGTGAAACCCGGTACCCTGGTCCAAGTGGCCATCCACTTCACAGTTATCCTGGGAGTGATCCTTACAGCATTGGTGGACGTGGACGCTTCCTAGACGGTCGTCAGATGGGTGAACTGGCCTCAAGGGAATACACTGATGTAGCTTATCCCTTCCCACCCACTGGTTAGTTCTTTAATCAATTGCGCCCTGCTGTTGCATGTGATATTTTTCCAACAAGAAAATCAAAATTCAAAAAGCTTGCCACTTTTCATGTAAGTGGGTATTTACATTAGACAGAGTGTCGGCTGTTTGTTAACTTGGTAGATTCTTCAGATTGCGGATGGTTAATATTAAAAAGTCGATTGTCCTGTCAGACTCGGATACTCTTAGATGATAGAATCCATTTTGTTCTTCAGTCTCTGAATCCTTTTTTATTTCTTGAGGAGGTACGGGGAATGACATTGTTGTATACCGCAATTTTTGTTTCTTAAGTACAGTGTTGTATACCGCAATTTTTTTTGCATGGCAAATTTGATCTTTTTTTCTTTTTTTTCCTCTCTCACAAGGGTGCTTACTGATCATTCCTAATTCTGTGCCTATATTCAGGTCCACCTTATGGAACCCCACCTCCAAGACCTACATATCATTATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGGTTATGCCTACCCACGTCCAAGATACCACTGA

mRNA sequence

ATGACAGCCAATTATATCTTGCCCACTAGCAAGGACATGCCTGGATCGGAAGAATATTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGATGCTTGGATGGGATGAAACGTGCTCTACCATCTGAATCACGTGACAGCAATACATCATTTTCTAAAGCTAGTACTGCTCCTCTTGTTTTGCCCTCATCTCGAGATCAAGGTCGACGTGGTATACCAGATGCTGGACGATATGGAAGTCCAAGATTTATTTCTGAAGTACATCAAGAAAATATGATTTCTCCTTTACCAAGATTTGTTCCCCCTCACAGACGATACGAGAATTTGATTAGTGAAACCCGGTACCCTGGTCCAAGTGGCCATCCACTTCACAGTTATCCTGGGAGTGATCCTTACAGCATTGGTGGACGTGGACGCTTCCTAGACGGTCGTCAGATGGGTGAACTGGCCTCAAGGGAATACACTGATGTAGCTTATCCCTTCCCACCCACTGGTCCACCTTATGGAACCCCACCTCCAAGACCTACATATCATTATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGGTTATGCCTACCCACGTCCAAGATACCACTGA

Coding sequence (CDS)

ATGACAGCCAATTATATCTTGCCCACTAGCAAGGACATGCCTGGATCGGAAGAATATTTTGATGAGGTTATATTTGTAGAACTTGATCGTGCAGAGTCTCAAAGATGCTTGGATGGGATGAAACGTGCTCTACCATCTGAATCACGTGACAGCAATACATCATTTTCTAAAGCTAGTACTGCTCCTCTTGTTTTGCCCTCATCTCGAGATCAAGGTCGACGTGGTATACCAGATGCTGGACGATATGGAAGTCCAAGATTTATTTCTGAAGTACATCAAGAAAATATGATTTCTCCTTTACCAAGATTTGTTCCCCCTCACAGACGATACGAGAATTTGATTAGTGAAACCCGGTACCCTGGTCCAAGTGGCCATCCACTTCACAGTTATCCTGGGAGTGATCCTTACAGCATTGGTGGACGTGGACGCTTCCTAGACGGTCGTCAGATGGGTGAACTGGCCTCAAGGGAATACACTGATGTAGCTTATCCCTTCCCACCCACTGGTCCACCTTATGGAACCCCACCTCCAAGACCTACATATCATTATCAATTTCCTTCCAATATGCCTTATGATGGTAGAGGTTATGCCTACCCACGTCCAAGATACCACTGA

Protein sequence

MTANYILPTSKDMPGSEEYFDEVIFVELDRAESQRCLDGMKRALPSESRDSNTSFSKASTAPLVLPSSRDQGRRGIPDAGRYGSPRFISEVHQENMISPLPRFVPPHRRYENLISETRYPGPSGHPLHSYPGSDPYSIGGRGRFLDGRQMGELASREYTDVAYPFPPTGPPYGTPPPRPTYHYQFPSNMPYDGRGYAYPRPRYH
Homology
BLAST of Bhi08G001554 vs. ExPASy TrEMBL
Match: A0A0A0LS87 (SPRY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071900 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 163/204 (79.90%), Postives = 172/204 (84.31%), Query Frame = 0

Query: 1   MTANYILPTSKDMPGSEEYFDEVIFVELDRAESQRCLDGMKRALPSESRDSNTSFSKAST 60
           M ANYILPTSKD+PGS EYFDEVIFVELDR ESQRCLD MKRALPSES D  TSFSKAST
Sbjct: 397 MLANYILPTSKDIPGSGEYFDEVIFVELDRPESQRCLDAMKRALPSESCDDFTSFSKAST 456

Query: 61  APLVLPSSRDQGRRGIPDAGRYGSPRFISEVHQENMISPLPRFVPPHRRYENLISETRYP 120
           APLV PSSRDQGR  +PDAGRYG PRFISEVHQENM SPLPRF+PPH  Y +LI ETRYP
Sbjct: 457 APLVSPSSRDQGRLDMPDAGRYGIPRFISEVHQENMTSPLPRFIPPHGPYGSLIDETRYP 516

Query: 121 GPSGHPLHSYPGSDPYSIGGRGRFLDGRQMGELASREYTDVAYPFPPTGPPYGTPPPRPT 180
              GH LHSYPG+DPYSIGGRG FLD RQMGEL   +YTDVA+P PPTGPPY TPPPR T
Sbjct: 517 ---GHLLHSYPGTDPYSIGGRGHFLDSRQMGELCQGQYTDVAHPLPPTGPPYRTPPPRIT 576

Query: 181 YHYQFPSNMPYDGRGYAYPRPRYH 205
             +QFPSNMPYDGRGY  PRPRY+
Sbjct: 577 --HQFPSNMPYDGRGYTSPRPRYY 595

BLAST of Bhi08G001554 vs. ExPASy TrEMBL
Match: A0A5D3DSD4 (Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00300 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.8e-84
Identity = 163/206 (79.13%), Postives = 174/206 (84.47%), Query Frame = 0

Query: 1   MTANYILPTSKDMPGSEEYFDEVIFVELDRAESQRCLDGMKRALPSESRDSNTSFSKAST 60
           M ANYILPTSKD+PGS EYFDEVIFVELDRAESQRCLD MK ALPSESRD+ TSFSKAST
Sbjct: 443 MLANYILPTSKDIPGSGEYFDEVIFVELDRAESQRCLDAMKHALPSESRDNFTSFSKAST 502

Query: 61  APLVLPSSRDQGRRGIPDAGRYGSPRFISEVHQENMISPLPRFVPPHRRYENLISETRYP 120
           APLV PSSRDQG+RG+PDAGRYG PRF SEV+QENM SPLPRF+PPH  Y +LI ETRYP
Sbjct: 503 APLVSPSSRDQGQRGMPDAGRYGVPRFTSEVYQENMTSPLPRFIPPHGPYGSLIGETRYP 562

Query: 121 GPSGHPLHSYPGSDPYSIGGRGRFLDGRQMGELASREYTDVAY--PFPPTGPPYGTPPPR 180
              GH LHSYPGSDPYSIGGRG FLD   +GE+  REYTDVA+  P PPTGPPYGTPPPR
Sbjct: 563 ---GHLLHSYPGSDPYSIGGRGHFLDSGHVGEVRQREYTDVAHRLPVPPTGPPYGTPPPR 622

Query: 181 PTYHYQFPSNMPYDGRGYAYPRPRYH 205
            T  YQFPSNMPYDGRGY   RPRY+
Sbjct: 623 IT--YQFPSNMPYDGRGYTSSRPRYY 643

BLAST of Bhi08G001554 vs. ExPASy TrEMBL
Match: A0A1S3B591 (heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucumis melo OX=3656 GN=LOC103485967 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.8e-84
Identity = 163/206 (79.13%), Postives = 174/206 (84.47%), Query Frame = 0

Query: 1   MTANYILPTSKDMPGSEEYFDEVIFVELDRAESQRCLDGMKRALPSESRDSNTSFSKAST 60
           M ANYILPTSKD+PGS EYFDEVIFVELDRAESQRCLD MK ALPSESRD+ TSFSKAST
Sbjct: 397 MLANYILPTSKDIPGSGEYFDEVIFVELDRAESQRCLDAMKHALPSESRDNFTSFSKAST 456

Query: 61  APLVLPSSRDQGRRGIPDAGRYGSPRFISEVHQENMISPLPRFVPPHRRYENLISETRYP 120
           APLV PSSRDQG+RG+PDAGRYG PRF SEV+QENM SPLPRF+PPH  Y +LI ETRYP
Sbjct: 457 APLVSPSSRDQGQRGMPDAGRYGVPRFTSEVYQENMTSPLPRFIPPHGPYGSLIGETRYP 516

Query: 121 GPSGHPLHSYPGSDPYSIGGRGRFLDGRQMGELASREYTDVAY--PFPPTGPPYGTPPPR 180
              GH LHSYPGSDPYSIGGRG FLD   +GE+  REYTDVA+  P PPTGPPYGTPPPR
Sbjct: 517 ---GHLLHSYPGSDPYSIGGRGHFLDSGHVGEVRQREYTDVAHRLPVPPTGPPYGTPPPR 576

Query: 181 PTYHYQFPSNMPYDGRGYAYPRPRYH 205
            T  YQFPSNMPYDGRGY   RPRY+
Sbjct: 577 IT--YQFPSNMPYDGRGYTSSRPRYY 597

BLAST of Bhi08G001554 vs. ExPASy TrEMBL
Match: A0A5A7UM70 (Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001190 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.4e-83
Identity = 163/207 (78.74%), Postives = 174/207 (84.06%), Query Frame = 0

Query: 1   MTANYILPTSKDMPGSEEYFDE-VIFVELDRAESQRCLDGMKRALPSESRDSNTSFSKAS 60
           M ANYILPTSKD+PGS EYFDE VIFVELDRAESQRCLD MK ALPSESRD+ TSFSKAS
Sbjct: 397 MLANYILPTSKDIPGSGEYFDEVVIFVELDRAESQRCLDAMKHALPSESRDNFTSFSKAS 456

Query: 61  TAPLVLPSSRDQGRRGIPDAGRYGSPRFISEVHQENMISPLPRFVPPHRRYENLISETRY 120
           TAPLV PSSRDQG+RG+PDAGRYG PRF SEV+QENM SPLPRF+PPH  Y +LI ETRY
Sbjct: 457 TAPLVSPSSRDQGQRGMPDAGRYGVPRFTSEVYQENMTSPLPRFIPPHGPYGSLIGETRY 516

Query: 121 PGPSGHPLHSYPGSDPYSIGGRGRFLDGRQMGELASREYTDVAY--PFPPTGPPYGTPPP 180
           P   GH LHSYPGSDPYSIGGRG FLD   +GE+  REYTDVA+  P PPTGPPYGTPPP
Sbjct: 517 P---GHLLHSYPGSDPYSIGGRGHFLDSGHVGEVRQREYTDVAHRLPVPPTGPPYGTPPP 576

Query: 181 RPTYHYQFPSNMPYDGRGYAYPRPRYH 205
           R T  YQFPSNMPYDGRGY   RPRY+
Sbjct: 577 RIT--YQFPSNMPYDGRGYTSSRPRYY 598

BLAST of Bhi08G001554 vs. ExPASy TrEMBL
Match: A0A6J1ENE3 (heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111434160 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 9.8e-83
Identity = 164/205 (80.00%), Postives = 175/205 (85.37%), Query Frame = 0

Query: 1   MTANYILPTSKDMPGSEEYFDEVIFVELDRAESQRCLDGMKRALPSESRDSNTSFSKAST 60
           M AN+ILPTSK+MPGSEE+FDEVIFVELDRAESQR LDGMKRAL SESRD+ TSFSKA T
Sbjct: 397 MLANFILPTSKNMPGSEEFFDEVIFVELDRAESQRYLDGMKRALTSESRDNLTSFSKAIT 456

Query: 61  A-PLVLPSSRDQGRRGIPDAGRYGSPRFISEVHQENMISPLPRFVPPHRRYENLISETRY 120
           A P VLPSS++QG RG+ DA +YG+PRFISEVHQENM SPLPRFVP HR YE+LI ETRY
Sbjct: 457 APPHVLPSSQNQGLRGVSDARQYGNPRFISEVHQENMYSPLPRFVPLHRPYESLIGETRY 516

Query: 121 PGPSGHPLHSYPGSDPYSIGGRGRFLDGRQMGELASREYTDVAYPFPPTGPPYGTPPPRP 180
           PGPS HPLHSYPGSDPYSIG  G F D RQMGEL  REY DVAY FP TGPPYGTPPPRP
Sbjct: 517 PGPSSHPLHSYPGSDPYSIG--GHFRDSRQMGELFPREYADVAYSFPTTGPPYGTPPPRP 576

Query: 181 TYHYQFPSNMPYDGRGYAYPRPRYH 205
              YQFPSNMPY GRGYA PRPRY+
Sbjct: 577 A--YQFPSNMPY-GRGYASPRPRYY 596

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS872.1e-8579.90SPRY domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G071900 PE=4 S... [more]
A0A5D3DSD41.8e-8479.13Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucumis melo var. ma... [more]
A0A1S3B5911.8e-8479.13heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucumis melo OX=3656... [more]
A0A5A7UM704.4e-8378.74Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucumis melo var. ma... [more]
A0A6J1ENE39.8e-8380.00heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Cucurbita moschata O... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66
NoneNo IPR availablePANTHERPTHR12381:SF56HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Ucoord: 1..78
NoneNo IPR availablePANTHERPTHR12381HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBERcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001554Bhi08M001554mRNA