Bhi08G001524 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001524
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Patatin
Location	chr8: 53694596 .. 53694937 (-)
RNA-Seq Expression	Bhi08G001524
Synteny	Bhi08G001524

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAACTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAATGCTGCAGCAGCTCACAGAGGTCTCAAGGACCTGACATGGCTTCTTCTGGTCGCAGCAGTTCACCATCCACCTTCTGGCACTCCGTAATGTCATGGCGAAGGAAGAAGAAGCAAACCAGCAATCGCTTTGTCCCAAAAATGTGCTCGACTTTTGATGTTTCGAAAAGCAATCGCCTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGCTTGCACATGTAG

mRNA sequence

ATGGCTGCAACTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAATGCTGCAGCAGCTCACAGAGGTCTCAAGGACCTGACATGGCTTCTTCTGGTCGCAGCAGTTCACCATCCACCTTCTGGCACTCCGTAATGTCATGGCGAAGGAAGAAGAAGCAAACCAGCAATCGCTTTGTCCCAAAAATGTGCTCGACTTTTGATGTTTCGAAAAGCAATCGCCTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGCTTGCACATGTAG

Coding sequence (CDS)

ATGGCTGCAACTGCAACTGCTCCTGTTGCCATTGGAACTCGAGGAACCATTGGTTCACTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAATGCTGCAGCAGCTCACAGAGGTCTCAAGGACCTGACATGGCTTCTTCTGGTCGCAGCAGTTCACCATCCACCTTCTGGCACTCCGTAATGTCATGGCGAAGGAAGAAGAAGCAAACCAGCAATCGCTTTGTCCCAAAAATGTGCTCGACTTTTGATGTTTCGAAAAGCAATCGCCTGAATAAGATTTCTGGGTTAAGTTATACGATCCTTCAGAATGATTTCCACAGCTTGCACATGTAG

Protein sequence

MAATATAPVAIGTRGTIGSLVKKEIDYFAKIELECCSSSQRSQGPDMASSGRSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSTFDVSKSNRLNKISGLSYTILQNDFHSLHM

Homology

[Close]

BLAST of Bhi08G001524 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 46/109 (42.20%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 7   APVAIGTRGTIGSLVKKEIDYFAKI-----ELECCSSSQRSQGPDMASSGRSSSPSTFWH 66
           AP+AIGTRGTIGSLV+KEIDYF        + +    +            RSSS    W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 67  SVMSWRRKKKQT---SNRFVPKMCSTFDVSKSNRLNKISGLSYTILQND 108
           S   WR+KK+QT     +F P MCS  +VS  NR   + G +Y IL++D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

[Close]

BLAST of Bhi08G001524 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 7.2e-43
Identity = 92/109 (84.40%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 5   ATAPVAIGTRGTIGSLVKKEIDYFAKIELECCSSSQRSQGPDMASSGRSSSPSTFWHSVM 64
           ATAPVAIGTRGTIGSL+KKEIDYFAKIELE   SSQRSQGP+MASSG  SSP TFW S+M
Sbjct: 3   ATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSIM 62

Query: 65  SWRRKKKQTSNRFVPKMCSTFDVSKSNRLNKISGLSYTILQNDFHSLHM 114
           SWRRKKK TSNRF+ KMCSTFD S+SNR+NKISGLSYTILQNDFHSLH+
Sbjct: 63  SWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Bhi08G001524 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.1e-42
Identity = 93/109 (85.32%), Postives = 97/109 (88.99%), Query Frame = 0


Query: 5   ATAPVAIGTRGTIGSLVKKEIDYFAKIELECCSSSQRSQGPDMASSGRSSSPSTFWHSVM 64
           A APVAIGTRGTIGSLVKKEIDYFAKIELE   SSQRSQGP+MASSG  SSP TFW S+M
Sbjct: 19  AIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSLM 78

Query: 65  SWRRKKKQTSNRFVPKMCSTFDVSKSNRLNKISGLSYTILQNDFHSLHM 114
           SWRRK K TSNRFV KMCSTFD S+SNR+NKISGLSYTILQNDFHSLHM
Sbjct: 79  SWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

[Close]

BLAST of Bhi08G001524 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.0e-36
Identity = 85/110 (77.27%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 5   ATAPVAIGTRGTIGSLVKKEIDYFAKIELECCSSSQRSQGPDMASSG-RSSSPSTFWHSV 64
           ATAPVAIGTRGT+GSLVKKEIDYFAKIE E CS      G DMASS  RSSSP TFWH+V
Sbjct: 19  ATAPVAIGTRGTVGSLVKKEIDYFAKIEFERCS------GNDMASSSRRSSSPPTFWHTV 78

Query: 65  MSWRRKKKQTSNRFVPKMCSTFDVSKSNRLNKISGLSYTILQNDFHSLHM 114
           MSWRRKKK+  NRF+ K+CS FDVS SNRLNKISG +YTILQNDF+SLHM
Sbjct: 79  MSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTILQNDFNSLHM 122

[Close]

BLAST of Bhi08G001524 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.6e-34
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 5   ATAPVAIGTRGTIGSLVKKEIDYFAKIELECCSSSQRSQGPDMASSGRSSSPSTFWHSVM 64
           ATAPVAIGTRGTIGSL+KKEIDYFAKIELE   SSQRSQGP+MASSG  SSP TFW S+M
Sbjct: 19  ATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGCRSSPPTFWQSIM 78

Query: 65  SWRRKKKQTSNRFVPKMCSTFDVSKSNRLNKISGL 100
           SWRRKKK TSNRF+ KMCSTFD S+SNR+NKISG+
Sbjct: 79  SWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of Bhi08G001524 vs. ExPASy TrEMBL
Match: A0A5N6QB68 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000249 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 61/108 (56.48%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 5   ATAPVAIGTRGTIGSLVKKEIDYFAKIELECCSSSQRSQGP--DMAS-SGRSSSPSTFWH 64
           A APVAIGTRGT+GSLV+KEI+YF KIE++ C SS++ QG   D+AS SGRS+S  +FW 
Sbjct: 18  AIAPVAIGTRGTVGSLVRKEIEYFRKIEIDRCGSSRKPQGQIVDVASTSGRSASRPSFWF 77

Query: 65  SVMSWRRKKKQTSNRFVPKMCSTFDVSKSNRLNKISGLSYTILQNDFH 110
            +M+W+RKK+++S+  +P +CS  +V+ SNRLN+I G +Y IL+ND H
Sbjct: 78  LMMTWKRKKQRSSSGILPSICSAVEVADSNRLNRIPGYNYRILKNDLH 125

The following BLAST results are available for this feature:

BLAST of Bhi08G001524 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	1.5e-13	42.20	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

BLAST of Bhi08G001524 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi08G001524 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSE9	7.2e-43	84.40	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A0A0LX43	6.1e-42	85.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A6J1CHB1	5.0e-36	77.27	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7UTL1	1.6e-34	82.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5N6QB68	1.3e-23	56.48	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000249 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..58
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 4..112
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 4..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001524	Bhi08M001524	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016787	hydrolase activity