Bhi08G001465 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001465
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein ROOT PRIMORDIUM DEFECTIVE 1
Location	chr8: 51818417 .. 51818734 (+)
RNA-Seq Expression	Bhi08G001465
Synteny	Bhi08G001465

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCATGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGTTGA

mRNA sequence

ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCATGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGTTGA

Coding sequence (CDS)

ATGTGGCCAGTTACAAATCATGAGAACATTAAATTGAAAGATTATTCAGATATGTTTCGAATTGTAAATATTGGAAAAAAGAACTCAATAGAAATAGAACTGATCTCTTGGAAACCAGAGCTAGCAATTTCCAACATAGAATCTTCAGCTTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCATTGCCAACAACTTTGCTAAATTCATGGGAAAAGTTCCATGAATTTAATGCATCTCCATATGTGTCACCATATGTAAACCCTGTAGGTTTGGTGGAAGGTACAAAGGAGATGGAAAAGAGGACAGTGGGTTGA

Protein sequence

MWPVTNHENIKLKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG

Homology

[Close]

BLAST of Bhi08G001465 vs. TAIR 10
Match: AT2G31290.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-28
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 15  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSD+FR+VN  G+K+S+EIEL+ WKPELA+S +E++A K G EP+FSCSLP+T    WE+
Sbjct: 168 YSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWER 227

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F EFNA PY+SPY +   LVEG+KE EKR+VG
Sbjct: 228 FMEFNAFPYISPYEDHGDLVEGSKESEKRSVG 259

[Close]

BLAST of Bhi08G001465 vs. TAIR 10
Match: AT2G31290.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-28
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 15  YSDMFRIVNI-GKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSD+FR+VN  G+K+S+EIEL+ WKPELA+S +E++A K G EP+FSCSLP+T    WE+
Sbjct: 168 YSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEAAAKKCGSEPSFSCSLPSTWTKPWER 227

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F EFNA PY+SPY +   LVEG+KE EKR+VG
Sbjct: 228 FMEFNAFPYISPYEDHGDLVEGSKESEKRSVG 259

[Close]

BLAST of Bhi08G001465 vs. TAIR 10
Match: AT3G63090.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 12  LKDYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA----CKHGV--EPAFSCSLPT 71
           ++ Y + FR+  + ++    +EL+SW P+ A S IE  A     K GV   P ++  LP+
Sbjct: 181 VQKYPNYFRLTGLPEEGKSFLELVSWNPDFAKSKIELRAEDETLKTGVRIRPNYNVKLPS 240

Query: 72  TL-----LNSWEKFHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
                  +  W +  ++    Y+SPY +   L + +KEMEKRTVG
Sbjct: 241 GFFLRKEMREWTR--DWLEQDYISPYEDVSHLDQASKEMEKRTVG 283

[Close]

BLAST of Bhi08G001465 vs. TAIR 10
Match: AT5G21970.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 29/103 (28.16%), Postives = 47/103 (45.63%), Query Frame = 0


Query: 14  DYSDMFRIVNIGKKNSIEIELISWKPELAISNIESSA------CKHG---VEPAFSCSLP 73
           ++   F++V +G      +EL+SW P  AI+ +E         C+H    +  AF    P
Sbjct: 197 NFPQHFKVVKLGDGEEY-LELVSWNPAWAITELEKKTLGITEDCEHKPGMLSLAFPMKFP 256

Query: 74  TTLLNSWE---KFHEFNASPYVSPYVNPVGLVEGTKEMEKRTV 105
            +    +    K   F    Y+SPY +  GL  G+KE +KR +
Sbjct: 257 PSYKKMYRYRGKIEHFQKRSYLSPYADARGLEAGSKEFDKRAI 298

[Close]

BLAST of Bhi08G001465 vs. ExPASy TrEMBL
Match: A0A5D3DGZ3 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00680 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]

BLAST of Bhi08G001465 vs. ExPASy TrEMBL
Match: A0A0A0KEF0 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]

BLAST of Bhi08G001465 vs. ExPASy TrEMBL
Match: A0A1S4DTX7 (LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103485622 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           +SD+FRIVN  GKKNS+EIELISWKPELAIS+IESSACKHGVEPAFSCSLPTT +NSWEK
Sbjct: 174 HSDIFRIVNYTGKKNSMEIELISWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           F+EFNASPYVSPYVNP GLV+GT+EMEKRTVG
Sbjct: 234 FNEFNASPYVSPYVNPAGLVQGTREMEKRTVG 265

[Close]

BLAST of Bhi08G001465 vs. ExPASy TrEMBL
Match: A0A6J1C186 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006501 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.2e-37
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEK
Sbjct: 174 YSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSASRHGVEPAFSCSLPTTWINSWEK 233

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Sbjct: 234 FHEFNASPYVSPYVNPRELVQGSKEMEKRTVG 265

[Close]

BLAST of Bhi08G001465 vs. ExPASy TrEMBL
Match: A0A6J1BXE4 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006501 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.2e-37
Identity = 78/92 (84.78%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 15  YSDMFRIVN-IGKKNSIEIELISWKPELAISNIESSACKHGVEPAFSCSLPTTLLNSWEK 74
           YSDMFRIVN  GK+NS+EIEL+SWKPELAIS+IESSA +HGVEPAFSCSLPTT +NSWEK
Sbjct: 138 YSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSASRHGVEPAFSCSLPTTWINSWEK 197

Query: 75  FHEFNASPYVSPYVNPVGLVEGTKEMEKRTVG 106
           FHEFNASPYVSPYVNP  LV+G+KEMEKRTVG
Sbjct: 198 FHEFNASPYVSPYVNPRELVQGSKEMEKRTVG 229

The following BLAST results are available for this feature:

BLAST of Bhi08G001465 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31290.1	7.8e-28	61.96	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G31290.2	7.8e-28	61.96	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G63090.1	5.3e-08	32.38	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G21970.1	3.8e-06	28.16	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of Bhi08G001465 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi08G001465 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DGZ3	1.7e-38	86.96	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0KEF0	1.7e-38	86.96	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057120 PE=4 S...	[more]
A0A1S4DTX7	1.7e-38	86.96	LOW QUALITY PROTEIN: protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656...	[more]
A0A6J1C186	4.2e-37	84.78	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1BXE4	4.2e-37	84.78	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Momordica charantia OX=3673 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 11..105 e-value: 1.3E-15 score: 57.2
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 13..105
None	No IPR available	PANTHER	PTHR31476:SF5	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 13..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001465	Bhi08M001465	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding