Bhi08G001218 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001218
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2
Location	chr8: 42989784 .. 42990080 (-)
RNA-Seq Expression	Bhi08G001218
Synteny	Bhi08G001218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACAAAACGCAGCCCATATTATCAATATATTCACCCTCCTTTTCATTCAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCGTCCATTGTCATTCCATTAA

mRNA sequence

ATGGGACAAAACGCAGCCCATATTATCAATATATTCACCCTCCTTTTCATTCAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCGTCCATTGTCATTCCATTAA

Coding sequence (CDS)

ATGGGACAAAACGCAGCCCATATTATCAATATATTCACCCTCCTTTTCATTCAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTAGAAACAAGCTTAGAAAGGCGAGTATGGGCTTCCAAAATGACGAAGCAAGTGATGGACATGAACAACCATCTTCAATCACGGTTACTAGACATGATGCGGATTCGATTGTTCGGGCCTACAAAAATTAGCTCGTCCTCGAAGAAACGAAAAGATGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAGCGTCCATTGTCATTCCATTAA

Protein sequence

MGQNAAHIINIFTLLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKISSSSKKRKDERDRVARTREKRPLSFH

Homology

[Close]

BLAST of Bhi08G001218 vs. ExPASy TrEMBL
Match: A0A0A0LR59 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G050390 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-29
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTK+VMDMNNHLQSRLLDMMRIRLF P KIS
Sbjct: 389 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKEVMDMNNHLQSRLLDMMRIRLFEPAKIS 448

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+ REKR LSFH
Sbjct: 449 SSSKKQKDERDRVAKKREKRTLSFH 473

[Close]

BLAST of Bhi08G001218 vs. ExPASy TrEMBL
Match: A0A5A7UJJ9 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G001670 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-29
Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 389 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 448

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EKRP SFH
Sbjct: 449 SSSKKQKDERDRVAKKMEKRPSSFH 473

[Close]

BLAST of Bhi08G001218 vs. ExPASy TrEMBL
Match: A0A5D3BJZ3 (Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004600 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 389 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 448

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 449 SSSKKQKDERDRVAKKMEKLPSSFH 473

[Close]

BLAST of Bhi08G001218 vs. ExPASy TrEMBL
Match: A0A1S4DU54 (protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 386 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 445

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 446 SSSKKQKDERDRVAKKMEKLPSSFH 470

[Close]

BLAST of Bhi08G001218 vs. ExPASy TrEMBL
Match: A0A1S4DUX3 (protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484316 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 14  LLFIQTEGTSAAIQMKVETSLERRVWASKMTKQVMDMNNHLQSRLLDMMRIRLFGPTKIS 73
           +L ++TEGTSAAIQMKVETSLERR+WAS+MTKQVMDMNNHLQSR+LDMMRIRLF PTKI+
Sbjct: 479 ILDMKTEGTSAAIQMKVETSLERRMWASRMTKQVMDMNNHLQSRVLDMMRIRLFEPTKIN 538

Query: 74  SSSKKRKDERDRVARTREKRPLSFH 99
           SSSKK+KDERDRVA+  EK P SFH
Sbjct: 539 SSSKKQKDERDRVAKKMEKLPSSFH 563

The following BLAST results are available for this feature:

BLAST of Bhi08G001218 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G001218 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G001218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR59	3.0e-29	84.71	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A5A7UJJ9	5.1e-29	83.53	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BJZ3	3.3e-28	82.35	Protein ROOT INITIATION DEFECTIVE 3-like isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S4DU54	3.3e-28	82.35	protein ROOT INITIATION DEFECTIVE 3-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S4DUX3	3.3e-28	82.35	protein ROOT INITIATION DEFECTIVE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..98
None	No IPR available	PANTHER	PTHR18763:SF4	PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE	coord: 17..85
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 17..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001218	Bhi08M001218	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex