Bhi08G001150 (gene) Wax gourd (B227) v1

Overview
NameBhi08G001150
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRibonuclease H-like domain-containing protein
Locationchr8: 41538456 .. 41538948 (-)
RNA-Seq ExpressionBhi08G001150
SyntenyBhi08G001150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGCGCTAGTTGTTGCACTCGTTCAGGTTCCTGCTCTAGAAAAGGTGGTTGTGTATTTCCCATGCGGAAAGTGATTGGTGGGAAAACTAAGGCCAATGCCCAAAAGAAGGAGAGAACGGGCAGCTATGGTGAAGTCGGATGCTTGAAGCAAATTTAGATACGACAAGACAGCTCAGACGGAGTAGAGAGTTGCCACAACCTAGGGCGGGGTTTGCTTTCTAGTTAGTCAAAGTCCACCTTTTTACAAAGGGGGAGAGTGCCAGGATGGACGACGTCAAGGAGAATGTAGAGATGCCATCAGTTTGGAACACGAAGCCTGTAGAGATTCCTGCAATGAAGATAAGAAAAGGCTCGACAGAGGAGATTCGGTAACTGTTATGAATGTGGAGGAGTGGGGCATTTTGCTTGTTACTGTCCCATCCCAATGTTCAGATAGACGAATGCTACTGAGAAAATGCAGAATAGACCAGCTAAAGATGGAAGAGTGA

mRNA sequence

ATGAAAGGCGCTAGTTGTTGCACTCGTTCAGGTTCCTGCTCTAGAAAAGGTGGTTGTGTATTTCCCATGCGGAAAGTGATTGGTGGGAAAACTAAGGCCAATGCCCAAAAGAAGGAGAGAACGGGCAGCTATGTTAGTCAAAGTCCACCTTTTTACAAAGGGGGAGAGTGCCAGGATGGACGACGTCAAGGAGAATGTAGAGATGCCATCAGTTTGGAACACGAAGCCTGTAGAGATTCCTGCAATGAAGATAAGAAAAGGCTCGACAGAGGAGATTCGGTAACTGTTATGAATGTGGAGGAGTGGGGCATTTTGCTTGTTACTGTCCCATCCCAATGTTCAGATAGACGAATGCTACTGAGAAAATGCAGAATAGACCAGCTAAAGATGGAAGAGTGA

Coding sequence (CDS)

ATGAAAGGCGCTAGTTGTTGCACTCGTTCAGGTTCCTGCTCTAGAAAAGGTGGTTGTGTATTTCCCATGCGGAAAGTGATTGGTGGGAAAACTAAGGCCAATGCCCAAAAGAAGGAGAGAACGGGCAGCTATGTTAGTCAAAGTCCACCTTTTTACAAAGGGGGAGAGTGCCAGGATGGACGACGTCAAGGAGAATGTAGAGATGCCATCAGTTTGGAACACGAAGCCTGTAGAGATTCCTGCAATGAAGATAAGAAAAGGCTCGACAGAGGAGATTCGGTAACTGTTATGAATGTGGAGGAGTGGGGCATTTTGCTTGTTACTGTCCCATCCCAATGTTCAGATAGACGAATGCTACTGAGAAAATGCAGAATAGACCAGCTAAAGATGGAAGAGTGA

Protein sequence

MKGASCCTRSGSCSRKGGCVFPMRKVIGGKTKANAQKKERTGSYVSQSPPFYKGGECQDGRRQGECRDAISLEHEACRDSCNEDKKRLDRGDSVTVMNVEEWGILLVTVPSQCSDRRMLLRKCRIDQLKMEE
Homology
[Close]
BLAST of Bhi08G001150 vs. ExPASy TrEMBL
Match: A0A1J6KIY5 (Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_59447 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-12
Identity = 48/76 (63.16%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 37  KKERTGSYVSQSPPFYKGGE--CQDGRRQGECRDAISLEHEACRDSCNEDKKRLDRGDSV 96
           KKER GS           GE  C  GR  GE RDAISLE EA R  C  DKKRL RGD V
Sbjct: 16  KKERAGS----------SGEAGCSKGRAPGERRDAISLEREASRACCRGDKKRLSRGDLV 75

Query: 97  TVMNVEEWGILLVTVP 111
           TVMNVEEWGI LVTVP
Sbjct: 76  TVMNVEEWGIFLVTVP 81

[Close]
BLAST of Bhi08G001150 vs. ExPASy TrEMBL
Match: A0A1J6KC34 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_53389 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 45/76 (59.21%), Postives = 46/76 (60.53%), Query Frame = 0 

Query: 37  KKERTGSYVSQSPPFYKGGE--CQDGRRQGECRDAISLEHEACRDSCNEDKKRLDRGDSV 96
           KKER GS           GE  C  GR  GE +DAI LE EA R  C  DKKRL RG  V
Sbjct: 16  KKERAGS----------SGEVGCSKGRAPGERQDAIGLEREASRACCRGDKKRLSRGYLV 75

Query: 97  TVMNVEEWGILLVTVP 111
           TVMNVEEWGI LVTVP
Sbjct: 76  TVMNVEEWGIFLVTVP 81

[Close]
BLAST of Bhi08G001150 vs. ExPASy TrEMBL
Match: B9STC0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0432760 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-09
Identity = 38/58 (65.52%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 75  EACRDSCNEDKKRLDRGDSVTVMNVEEWGILLVTVPSQCSDRRMLLRKCRIDQLKMEE 133
           +A R  C  DKKRL RGD VT+MNVEEWGILLVTVP     R     +CRIDQLKMEE
Sbjct: 3   QASRACCKGDKKRLSRGDPVTIMNVEEWGILLVTVP--MFRRTNAAGECRIDQLKMEE 58

[Close]
BLAST of Bhi08G001150 vs. ExPASy TrEMBL
Match: A0A6S7L348 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS6743 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 45/85 (52.94%), Postives = 48/85 (56.47%), Query Frame = 0 

Query: 35  AQKKERTGS----YVSQSPPFYKGGECQD-----GRRQGECRDAISLEHEACRDSCNEDK 94
           A KKER GS      S+   F+     Q+     GR QGE RDAISLEHEA R  C    
Sbjct: 14  ASKKERAGSGGEAGCSKQFSFFYDKTAQEEGRASGRLQGERRDAISLEHEASRTCC---- 73

Query: 95  KRLDRGDSVTVMNVEEWGILLVTVP 111
               RGD VTVMNVEEWGI LVT P
Sbjct: 74  ----RGDPVTVMNVEEWGIFLVTAP 90

[Close]
BLAST of Bhi08G001150 vs. ExPASy TrEMBL
Match: A0A6S7KSU9 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS2697 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.7e-07
Identity = 43/83 (51.81%), Postives = 46/83 (55.42%), Query Frame = 0 

Query: 37  KKERTGS----YVSQSPPFYKGGECQD-----GRRQGECRDAISLEHEACRDSCNEDKKR 96
           KKER GS      S+   F+     Q+     GR QGE RDAISLE EA R  C      
Sbjct: 107 KKERAGSGGEAGCSKQFSFFYDKTAQEEGRATGRLQGERRDAISLEREASRACC------ 166

Query: 97  LDRGDSVTVMNVEEWGILLVTVP 111
             RGD VTVMNVEEWGI LVT P
Sbjct: 167 --RGDPVTVMNVEEWGIFLVTAP 181

The following BLAST results are available for this feature:
BLAST of Bhi08G001150 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi08G001150 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi08G001150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J6KIY53.4e-1263.16Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_5944... [more]
A0A1J6KC343.2e-1059.21Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_53389 PE=4 SV=1[more]
B9STC04.6e-0965.52Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0432760 PE=4 SV=1[more]
A0A6S7L3483.0e-0852.94Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS6743 PE=4 SV=1[more]
A0A6S7KSU99.7e-0751.81Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS2697 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001150Bhi08M001150mRNA