Bhi08G000996 (gene) Wax gourd (B227) v1

Overview
NameBhi08G000996
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRNase H domain-containing protein
Locationchr8: 37236605 .. 37237087 (-)
RNA-Seq ExpressionBhi08G000996
SyntenyBhi08G000996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAATGACATAAATGCAATAATCAATAAAGGTAGTTTCATCTCGGTAGAAGCAAGAAGTAAATGGATTAGAGACTACCTGGAGCAAGTTACCAGTGTCTCTCTTCCTCCTATTTTGAATCAAGGTGTTAAATCAATGACGACTTCGACATGCAACAGGGTTTGGTCTCCTCCTACCAAAGGCTTATTCTCTCTCACCGTCGATGTTGCATGGATTGTAAATCCAACCGTGACAGGTCTTGGTGCTGCTATACGGAACTACGATGGCTCTGTTATAGCTTTACTCTCAAAGAGTCTGACCATGACTTACACGCCATTAATTGTCGAACTCCTTGCAATAATCAAAGGCATGAAGTTGGTCATTTCACTGGGTATCCCTAACCTTCGTGTTGAATCAGATTGTCTACTGGCGATTAATCTCATTAACAAAGAGCAGTTAGCTTTGAATGAAGTCGGTAGAACATTGAAGAAATTTTGTTGA

mRNA sequence

ATGTGGAATGACATAAATGCAATAATCAATAAAGGTAGTTTCATCTCGGTAGAAGCAAGAAGTAAATGGATTAGAGACTACCTGGAGCAAGTTACCAGTGTCTCTCTTCCTCCTATTTTGAATCAAGGTGTTAAATCAATGACGACTTCGACATGCAACAGGGTTTGGTCTCCTCCTACCAAAGGCTTATTCTCTCTCACCGTCGATGTTGCATGGATTGTAAATCCAACCGTGACAGGTCTTGGTGCTGCTATACGGAACTACGATGGCTCTGTTATAGCTTTACTCTCAAAGAGTCTGACCATGACTTACACGCCATTAATTGTCGAACTCCTTGCAATAATCAAAGGCATGAAGTTGGTCATTTCACTGGGTATCCCTAACCTTCGTGTTGAATCAGATTGTCTACTGGCGATTAATCTCATTAACAAAGAGCAGTTAGCTTTGAATGAAGTCGGTAGAACATTGAAGAAATTTTGTTGA

Coding sequence (CDS)

ATGTGGAATGACATAAATGCAATAATCAATAAAGGTAGTTTCATCTCGGTAGAAGCAAGAAGTAAATGGATTAGAGACTACCTGGAGCAAGTTACCAGTGTCTCTCTTCCTCCTATTTTGAATCAAGGTGTTAAATCAATGACGACTTCGACATGCAACAGGGTTTGGTCTCCTCCTACCAAAGGCTTATTCTCTCTCACCGTCGATGTTGCATGGATTGTAAATCCAACCGTGACAGGTCTTGGTGCTGCTATACGGAACTACGATGGCTCTGTTATAGCTTTACTCTCAAAGAGTCTGACCATGACTTACACGCCATTAATTGTCGAACTCCTTGCAATAATCAAAGGCATGAAGTTGGTCATTTCACTGGGTATCCCTAACCTTCGTGTTGAATCAGATTGTCTACTGGCGATTAATCTCATTAACAAAGAGCAGTTAGCTTTGAATGAAGTCGGTAGAACATTGAAGAAATTTTGTTGA

Protein sequence

MWNDINAIINKGSFISVEARSKWIRDYLEQVTSVSLPPILNQGVKSMTTSTCNRVWSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLKKFC
Homology
BLAST of Bhi08G000996 vs. ExPASy TrEMBL
Match: A0A2I4FLN6 (uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 PE=4 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-09
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 56  WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAII 115
           W PP  G   L VD A   +   +G+G  +R+  G V+   +K       P  +ELLA++
Sbjct: 89  WKPPPPGFLKLNVDGAMFADVGKSGIGVVLRDEAGQVVMAATKKEDFVDEPATIELLAVL 148

Query: 116 KGMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLK 158
           +G++  +SLGIPNL VESDCL+ +  +   Q +L+  G  ++
Sbjct: 149 RGLQFFLSLGIPNLVVESDCLVVVQELQDSQESLSSNGNLIQ 190

BLAST of Bhi08G000996 vs. ExPASy TrEMBL
Match: A0A5P1EL44 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F7380 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.1e-08
Identity = 42/157 (26.75%), Postives = 72/157 (45.86%), Query Frame = 0

Query: 1    MWNDINAIINKGSFIS----VEARSKWIRDYLEQVTSVSLPPILNQGVKSMTTSTCNRVW 60
            +W+D N  +   +       +E  S W   +L     V       QG+  +  ++  R+W
Sbjct: 847  IWHDRNKRVYGATVFDAKNLLERASCWWEGFLNAKGMVGCQDGSRQGLNDLREASLIRIW 906

Query: 61   SPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAIIK 120
              PT G   L VD A  ++  + G GA +R+  GS + +L+   T   +PL  E LA++ 
Sbjct: 907  RKPTNGFVKLNVDGALDIHRGIYGTGAVVRDERGSCVGVLATPGTGALSPLTCEALALVN 966

Query: 121  GMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVG 154
            G+   + +G   + +E D L  IN +N  +  L+  G
Sbjct: 967  GLHFCVQVGFKYVVIEGDSLAVINALNGSEEDLSMEG 1003

BLAST of Bhi08G000996 vs. ExPASy TrEMBL
Match: A0A2I4FII8 (uncharacterized protein LOC108999120 OS=Juglans regia OX=51240 GN=LOC108999120 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 44  VKSMTTSTCNRV--WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLT 103
           ++S +T    R   W+PP +G   L VD    ++    G+G  +R+  G ++   SK   
Sbjct: 111 LRSSSTHNAKRACSWNPPPRGFLKLNVDGVVFLDVRKAGMGVVLRDDKGKLVMAASKIEN 170

Query: 104 MTYTPLIVELLAIIKGMKLVISLGIPNLRVESDCLLAINLINKEQLALN 151
               P  +ELLA+++G++L++ LG   L VESDC+L +  +N +Q +L+
Sbjct: 171 AVENPSTIELLALLRGLQLIVHLGFSKLDVESDCILQVQELNNKQDSLS 219

BLAST of Bhi08G000996 vs. ExPASy TrEMBL
Match: A0A5C7GUI2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027554 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 56  WSPPTKGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAII 115
           W PP +G+F +  D A   N    G+   IRNY G V+A L + +  +Y P I+E +AI+
Sbjct: 63  WKPPDRGVFKINTDAALNENDFQFGISVVIRNYQGHVMASLCQIIKASYQPQIIEAMAIL 122

Query: 116 KGMKLVISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLKK 159
           KG+ L +SLG+    +E + L  +N++       N V   L K
Sbjct: 123 KGIWLAVSLGLLPASLELNALTVVNMVE----GANSVAHALSK 161

BLAST of Bhi08G000996 vs. ExPASy TrEMBL
Match: A0A4Q3DBE2 (Reverse transcriptase-like protein (Fragment) OS=Rickettsiaceae bacterium OX=2023360 GN=EOP33_09975 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 42/158 (26.58%), Postives = 77/158 (48.73%), Query Frame = 0

Query: 1   MWNDINAIINKGSFISVEARSKWIRDYLEQVTSVSLPPILNQGVKSMTTSTCNRVWSPPT 60
           +WN  N ++   S  S     +W   +LE+  + ++         + T  T    W+PP 
Sbjct: 80  LWNHRNNVLAGRSAWSQPQLVQWTVSFLEEYRAATVGE-----TPTSTRVTTTPRWTPPR 139

Query: 61  KGLFSLTVDVAWIVNPTVTGLGAAIRNYDGSVIALLSKSLTMTYTPLIVELLAIIKGMKL 120
            G  S+ VD A   +    G+G  +R++ G VIA  +  L   ++P + E  A+++G++L
Sbjct: 140 DGTLSINVDAALARDRGGFGVGCIVRDHTGEVIASQTLFLARGFSPQLAEAYAVLQGIEL 199

Query: 121 VISLGIPNLRVESDCLLAINLINKEQLALNEVGRTLKK 159
           V S+G     ++SDCL  + +I++      E+G  L +
Sbjct: 200 VRSVGGRRAEIQSDCLGVVRMIDEGVTPATELGTILHR 232

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2I4FLN63.3e-0935.29uncharacterized protein LOC109000195 OS=Juglans regia OX=51240 GN=LOC109000195 P... [more]
A0A5P1EL448.1e-0826.75Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F7380 PE=4 ... [more]
A0A2I4FII81.1e-0732.11uncharacterized protein LOC108999120 OS=Juglans regia OX=51240 GN=LOC108999120 P... [more]
A0A5C7GUI21.4e-0734.95RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_027554 ... [more]
A0A4Q3DBE21.4e-0726.58Reverse transcriptase-like protein (Fragment) OS=Rickettsiaceae bacterium OX=202... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 68..151
e-value: 2.8E-14
score: 53.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 64..158
e-value: 3.5E-9
score: 38.8
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 49..145
NoneNo IPR availablePANTHERPTHR47074:SF37PROTEIN, PUTATIVE-RELATEDcoord: 49..145
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 66..144
e-value: 2.1255E-14
score: 63.8724
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 63..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000996Bhi08M000996mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity