Bhi08G000926 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G000926
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	chr8: 35403536 .. 35404694 (+)
RNA-Seq Expression	Bhi08G000926
Synteny	Bhi08G000926

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATGTGATGGATGCTCAATGGGTTTATTGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGTTGTTGAGATTCGAAAACGATATTGGAGTTGGGGAAGAAGTTGTACTTATGACCACCAAAGGCGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGTGACCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAGTGGGGACTAGGTCATCCAGGGCATCAATGAAGAAAAAACTTATTGCGGGAAGGGAAGTTGGACAAGCATGGGAAGCCAAATGCGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCCACTGGTGGGGACTCTTTGGTTGCGAGCATTCTCGCTACCGATACCGCAACTGCTAAGCCTACTACTGCAGAAGAGACAGGAAAAGATGACGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGGTAAGAAACTGAAGGCTGAAAAGGCTGAAGAAGTTGAAGAAGAAGTCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTACTGCAGAAGAACCTTCCGATGAGGAGAATGTTGAAAATTCAGAGAAGAAAAAGAAGAAGAAGGATAAAGAAGCTAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCAAGAAGAAAAAGAAAAAGAAAGATAACGAGTCTGGAAATGACGATTCTCAATTACATGCTGCTGATGTTCAAAATGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAAAAGAAGAAGAAGGATAAAGAAGCTAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCAAGAAGAAAAAGAAAAAGAAAGATAACGAGTCTGGAAATGACGATTCTCAATTACATGCTGCTGATGTTCAAAATGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

mRNA sequence

ATGCATGATGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGTTGTTGAGATTCGAAAACGATATTGGAGTTGGGGAAGAAGTTGTACTTATGACCACCAAAGGCGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGTGACCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAAAAAAACTTATTGCGGGAAGGGAAGTTGGACAAGCATGGGAAGCCAAATGCGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCCACTGGTGGGGACTCTTTGGTTGCGAGCATTCTCGCTACCGATACCGCAACTGCTAAGCCTACTACTGCAGAAGAGACAGGAAAAGATGACGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGGTAAGAAACTGAAGGCTGAAAAGGCTGAAGAAGTTGAAGAAGAAGTCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTACTGCAGAAGAACCTTCCGATGAGGAGAATGTTGAAAATTCAGAGAAGAAAAAGAAGAAGAAGGATAAAGAAGCTAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCAAGAAGAAAAAGAAAAAGAAAGATAACGAGTCTGGAAATGACGATTCTCAATTACATGCTGCTGATGTTCAAAATGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAAAAGAAGAAGAAGGATAAAGAAGCTAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCAAGAAGAAAAAGAAAAAGAAAGATAACGAGTCTGGAAATGACGATTCTCAATTACATGCTGCTGATGTTCAAAATGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

Coding sequence (CDS)

ATGCATGATGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGTTGTTGAGATTCGAAAACGATATTGGAGTTGGGGAAGAAGTTGTACTTATGACCACCAAAGGCGAAGCCATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGTGACCATGGTGTTGTTGCAAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGGAAAAAAAACTTATTGCGGGAAGGGAAGTTGGACAAGCATGGGAAGCCAAATGCGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCCACTGGTGGGGACTCTTTGGTTGCGAGCATTCTCGCTACCGATACCGCAACTGCTAAGCCTACTACTGCAGAAGAGACAGGAAAAGATGACGGAGGGCGGAAGCGAAAACTAGATGAAGAAACTGAAGCTGCTCCAGGTAAGAAACTGAAGGCTGAAAAGGCTGAAGAAGTTGAAGAAGAAGTCGGGAAGAAAGAAAAGAAGAAGAAGAAGAAGAAAGACAAAGAGAAGGGTACTGCAGAAGAACCTTCCGATGAGGAGAATGTTGAAAATTCAGAGAAGAAAAAGAAGAAGAAGGATAAAGAAGCTAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCAAGAAGAAAAAGAAAAAGAAAGATAACGAGTCTGGAAATGACGATTCTCAATTACATGCTGCTGATGTTCAAAATGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAAAAGAAGAAGAAGGATAAAGAAGCTAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACAAAAGTCCAAGAAGAAAAAGAAAAAGAAAGATAACGAGTCTGGAAATGACGATTCTCAATTACATGCTGCTGATGTTCAAAATGGTGAAGCAGATGGTCATGTTGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAATAAAGAAGATGCAGAAGAATAA

Protein sequence

MHDDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKKNLLREGKLDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLDEETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKKKKDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKKKKKKNKEDAEE

Homology

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BLAST of Bhi08G000926 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-69
Identity = 181/306 (59.15%), Postives = 214/306 (69.93%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI VG EVVLMT
Sbjct: 269 DESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMT 328

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPR          KK L+ +GK
Sbjct: 329 TKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGK 388

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN  TP EW RN+VLPTGGD+++A   A   A  +     E G+    RKRK D
Sbjct: 389 LDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAA---APEEIKADAENGEAGEARKRKHD 448

Query: 184 EETEAAPGKKLKAEKAEEVE-EEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKK 243
           + +++      K  K +EVE EE  +K K  KKKK K+K   EE  +EE     ++KKKK
Sbjct: 449 DSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDK---EEEKEEEAGSEKKEKKKK 508

Query: 244 KDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKKK 299
           KDK+ +  +E  +P+++K KKKKK KD E+  D            E +   + SEKKKKK
Sbjct: 509 KDKKEEVIEEVASPKSEK-KKKKKSKDTEAAVD-----------AEDESAAEKSEKKKKK 556

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BLAST of Bhi08G000926 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.8e-68
Identity = 181/306 (59.15%), Postives = 214/306 (69.93%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI VG EVVLMT
Sbjct: 269 DESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMT 328

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPR          KK L+ +GK
Sbjct: 329 TKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGK 388

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN  TP EW RN+VLPTGGD+++A   A   A  +     E G+    RKRK D
Sbjct: 389 LDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAA---APEEIKADAENGEAGEARKRKHD 448

Query: 184 EETEAAPGKKLKAEKAEEVE-EEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKK 243
           + +++      K  K +EVE EE  +K K  KKKK K+K   EE  +EE     ++KKKK
Sbjct: 449 DSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDK---EEEKEEEAGSEKKEKKKK 508

Query: 244 KDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKKK 299
           KDK+ +  +E  +P+++K KKKKK KD E+  D            E +   + SEKKKKK
Sbjct: 509 KDKKEEVIEEVASPKSEK-KKKKKSKDTEAAVD-----------AEDESAAEKSEKKKKK 556

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BLAST of Bhi08G000926 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-48
Identity = 148/327 (45.26%), Postives = 191/327 (58.41%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVI PLE +LT+YKR+VVKDSA+NAICYGAKLMIPGLLR+E DI   EEVVL+T
Sbjct: 262 DESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLIT 321

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP----------RKKNLLREGK 123
           TKGEAIA+GIA+MTTA MATCDHGVVA IKRV+MDRD YP           KK ++++GK
Sbjct: 322 TKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDGK 381

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDK GKPN  TP +W       TG             AT   T+  E+          +D
Sbjct: 382 LDKFGKPNEKTPSDWTNTYTYYTG-----------QVATTTTTSPVES--------MNVD 441

Query: 184 EETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKKK 243
              +A     +KAE  E  E+E    +K+KK KK+K+K ++++ S+EE     +KK+KK+
Sbjct: 442 TPKKATASVAVKAE-VESSEDEKPVPKKEKKDKKEKKKDSSDDESEEEKSSKKDKKEKKE 501

Query: 244 DKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKKKK 303
            KE KE K +      +S KK+KK                             +K+KK  
Sbjct: 502 KKEKKEKKSSKDDSDDESSKKEKK----------------------------DKKRKKSS 540

Query: 304 DKEAKEAKEAGTPETQKSKKKKKKKDN 321
           DK++   KE+   + +K KK+KKK  N
Sbjct: 562 DKDSDSEKESSDKKDKKDKKEKKKSKN 540

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BLAST of Bhi08G000926 vs. ExPASy Swiss-Prot
Match: O14007 (H/ACA ribonucleoprotein complex subunit cbf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cbf5 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-45
Identity = 123/243 (50.62%), Postives = 159/243 (65.43%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVI PLE +L  YKR+VVKDSAVNAICYGAKLMIPGLLR+E  I V EE+VL+T
Sbjct: 253 DESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLIT 312

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIA+GIA+M+T  ++TCDHGVVAK+KR +M+RD YPR          KK L +EGK
Sbjct: 313 TKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLKKEGK 372

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDK+G+PN NTP +W ++ +  +  ++ VA   A   A A PT   E    +  +KRK  
Sbjct: 373 LDKYGRPNENTPADWSKSYIDYSDPNAEVAK-PAPVVAPAAPTVEAEVNGVEDSKKRK-- 432

Query: 184 EETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKKK 237
                        E +E+ E+E  KKE+K++KK+ K++        +E  E  EKK+KKK
Sbjct: 433 -----------SVESSEKDEDEAAKKEEKRRKKEAKKE-------KKEKKEKKEKKEKKK 474

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BLAST of Bhi08G000926 vs. ExPASy Swiss-Prot
Match: O43100 (H/ACA ribonucleoprotein complex subunit CBF5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cbf5 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-44
Identity = 117/233 (50.21%), Postives = 154/233 (66.09%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLR+VI PLE +LT+YKR+VVKDSAVNA+CYGAKLMIPGLLRFE  I +GEEVVLMT
Sbjct: 250 DESYLRKVIKPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIELGEEVVLMT 309

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIA+GIA+M+T  ++TCDHGVVAK+KR +M+RD YPR          KK L   GK
Sbjct: 310 TKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLKSSGK 369

Query: 124 LDKHGKPNANTPQEW---LRNLVLPTGGDSLVA-SILATDTATAKPTTAEETGKDDGGRK 183
           LDK+G+ N  TP +W    ++   P G  S  A  ++A + A+ K    EE   +    K
Sbjct: 370 LDKYGRANEATPAKWKSEYKDYSAPDGDSSQQAVDVVAKEEASPK----EEPSLEANESK 429

Query: 184 RKLDEETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEEN 223
             +D+  +    KK K  + E  EE   +K KKK+KK+ KE+  +++  D+ +
Sbjct: 430 MDIDDAQDDEDKKKRKRHEGETPEERAERKRKKKEKKEKKERRKSKQEKDDSD 478

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BLAST of Bhi08G000926 vs. ExPASy Swiss-Prot
Match: O43102 (H/ACA ribonucleoprotein complex subunit cbf5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=cbf5 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.0e-44
Identity = 120/233 (51.50%), Postives = 151/233 (64.81%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVI PLE +LT+YKR+VVKDSAVNA+CYGAKLMIPGLLRFE  I V EEVVLMT
Sbjct: 255 DESYLRRVIQPLESLLTTYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEVNEEVVLMT 314

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIA+GIA+M+T  ++TCDHGVVAK+KR +M+RD YPR          KK L   GK
Sbjct: 315 TKGEAIAIGIAQMSTVELSTCDHGVVAKVKRCIMERDLYPRRWGLGPVALEKKKLKSAGK 374

Query: 124 LDKHGKPNANTPQEW---LRNLVLPTGGDSLVAS-ILATDTATAKPTTAEETGKDDGGRK 183
           LDK+G+ N +TP +W    ++   P    +  AS   A +   A  TT ++        K
Sbjct: 375 LDKYGRANEDTPAKWKTEYKDYSAPEEASAHAASESTAKEDVAAALTTEQDEAPSSPQSK 434

Query: 184 RKLDEETEAAPGKKLKAEKAEE-VEEEVGKKEKKKKKKKDKEKGTAEEPSDEE 222
             +DE  E    K+ + E AEE  E +  KKEKK+KK++ K K   E+  D +
Sbjct: 435 MDVDETKEEKKRKRHEGETAEERAERKRKKKEKKEKKERRKSKQEKEDSDDSD 487

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BLAST of Bhi08G000926 vs. ExPASy TrEMBL
Match: A0A1S3BLH6 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491111 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 7.7e-115
Identity = 259/309 (83.82%), Postives = 268/309 (86.73%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT
Sbjct: 266 DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 325

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR          K  L+ EGK
Sbjct: 326 TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKXKLIGEGK 385

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN NTPQEWLRNLVLPTGGD LVAS  AT++ATAKPT AEE+GKDDGGRKRKLD
Sbjct: 386 LDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATESATAKPTAAEESGKDDGGRKRKLD 445

Query: 184 EETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKKK 243
           E+TEAAP KKLK E+     EEVGKKE KKKKKKDKEKGTAEEPS+EE VE SEKKKKKK
Sbjct: 446 EDTEAAPAKKLKTEEV----EEVGKKE-KKKKKKDKEKGTAEEPSNEEIVEYSEKKKKKK 505

Query: 244 DKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKKKK 303
           D   KEAKEAGTPET KS+KKKKKKD ESGNDDSQL AADVQNGEA  H DGSEKKKKKK
Sbjct: 506 D---KEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQNGEAHDHDDGSEKKKKKK 565

[Close]

BLAST of Bhi08G000926 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.5e-105
Identity = 251/311 (80.71%), Postives = 262/311 (84.24%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI VGEEVVLMT
Sbjct: 282 DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 341

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDRDTYPR          KK L+ EGK
Sbjct: 342 TKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGK 401

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN NTPQEWLRNLVLPTGGDSLVAS  A D A       +ET KD GGRKRKLD
Sbjct: 402 LDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAADAA---DEGKQETEKDGGGRKRKLD 461

Query: 184 EETEAAPGKKLKAEKAEEVEE--EVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKK 243
           E+ EAAP KKLK EKAEE EE  EVGKKE KKKKKKDKEKG   EP+DEENVE SEKKKK
Sbjct: 462 EDMEAAPTKKLKTEKAEEAEEVDEVGKKE-KKKKKKDKEKGNV-EPADEENVEKSEKKKK 521

Query: 244 KKDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKK 303
           KKD   KEAKEAGTPET+KS+KKKKKKD ESGND SQ   A +QNGEADGHVDGSEKKKK
Sbjct: 522 KKD---KEAKEAGTPETEKSEKKKKKKDKESGNDHSQ-SPAGIQNGEADGHVDGSEKKKK 581

[Close]

BLAST of Bhi08G000926 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 2.0e-102
Identity = 243/312 (77.88%), Postives = 255/312 (81.73%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI VGEEVVLMT
Sbjct: 282 DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 341

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPR          KK L+ EGK
Sbjct: 342 TKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGK 401

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN  TP EW+RNLVLPTGGDSLVAS+ ATD+AT      +ET KD GGRKRKLD
Sbjct: 402 LDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFATDSATV-DEGKQETEKDGGGRKRKLD 461

Query: 184 EETEAAPGKKLKAEKAEEVE--EEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKK 243
           EETEAAP KKLKAEK E+ E  EE GKKEKKKKKKKDKEKG+  EPSDEEN E SEKKKK
Sbjct: 462 EETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKKDKEKGSG-EPSDEENTEQSEKKKK 521

Query: 244 KKDKEAKEAKEAGTP-ETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKK 303
           K     KE KEAGTP E QKS+KKKKKKD ESG         DVQNGEAD HVDGSEKKK
Sbjct: 522 KD----KEGKEAGTPEEKQKSEKKKKKKDKESG-------VGDVQNGEADDHVDGSEKKK 580

[Close]

BLAST of Bhi08G000926 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 4.9e-101
Identity = 240/311 (77.17%), Postives = 255/311 (81.99%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI VGEEVVLMT
Sbjct: 282 DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 341

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDRDTYPR          KK L+ EGK
Sbjct: 342 TKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGK 401

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN  TP EW+RNLVLPTGGDSLVAS+ A+D+AT      +ET KD GGRKRKLD
Sbjct: 402 LDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFASDSATV-DEGKQETEKDGGGRKRKLD 461

Query: 184 EETEAAPGKKLKAEKAEEVEE-EVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKKKK 243
           EETEAAP KKLKAEK E+ EE E G K++KKKKKKDKEKG+  EPSDEEN    EKKKKK
Sbjct: 462 EETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKDKEKGSG-EPSDEENTVRLEKKKKK 521

Query: 244 KDKEAKEAKEAGTP-ETQKSKKKKKKKDNESGNDDSQLHAADVQNGEADGHVDGSEKKKK 303
           KD   KE KEAGTP ETQKS+KKKKKKD ESG         DVQNGEAD HVDGSEKKKK
Sbjct: 522 KD---KEGKEAGTPEETQKSEKKKKKKDKESG-------VGDVQNGEADDHVDGSEKKKK 580

[Close]

BLAST of Bhi08G000926 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 2.0e-99
Identity = 244/314 (77.71%), Postives = 256/314 (81.53%), Query Frame = 0


Query: 4   DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMT 63
           DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDI VGEEVVLMT
Sbjct: 282 DESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMT 341

Query: 64  TKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPR----------KKNLLREGK 123
           TKGEAIALGIAEMTT+VMATCDHG+VAKIKRVVMDRDTYPR          KK L+ EGK
Sbjct: 342 TKGEAIALGIAEMTTSVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGK 401

Query: 124 LDKHGKPNANTPQEWLRNLVLPTGGDSLVASILATDTATAKPTTAEETGKDDGGRKRKLD 183
           LDKHGKPN NTPQEWLRNLVLPTGGDSLVAS+ A+DTAT K + A +  KD  GRKRK D
Sbjct: 402 LDKHGKPNENTPQEWLRNLVLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHD 461

Query: 184 EETE-AAPGKKLKAEKAEEVE--EEVGKKEKKKKKKKDKEKGTAEEPSDEENVENSEKKK 243
           EETE AAP KKLK EK EE E  EE GKKE KKKKKKDKEKG   E SD+E  E SEKKK
Sbjct: 462 EETEAAAPAKKLKGEKVEEAEEIEESGKKE-KKKKKKDKEKG-GIEASDDEKAEKSEKKK 521

Query: 244 KKKDKEAKEAKEAGTPETQKS-KKKKKKKDNESGNDDSQLHAADVQNGEADGHVD-GSEK 303
           KKKDK+AKE  EAGTPET+KS KKKKKKKD ESGN        D QNGEA+GHVD GSEK
Sbjct: 522 KKKDKDAKE--EAGTPETEKSEKKKKKKKDKESGN--------DTQNGEAEGHVDGGSEK 581

The following BLAST results are available for this feature:

BLAST of Bhi08G000926 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	1.3e-69	59.15	homologue of NAP57	[more]

BLAST of Bhi08G000926 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	1.8e-68	59.15	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q54T81	2.7e-48	45.26	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
O14007	2.1e-45	50.62	H/ACA ribonucleoprotein complex subunit cbf5 OS=Schizosaccharomyces pombe (strai...	[more]
O43100	1.4e-44	50.21	H/ACA ribonucleoprotein complex subunit CBF5 OS=Emericella nidulans (strain FGSC...	[more]
O43102	4.0e-44	51.50	H/ACA ribonucleoprotein complex subunit cbf5 OS=Neosartorya fumigata (strain ATC...	[more]

BLAST of Bhi08G000926 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLH6	7.7e-115	83.82	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo O...	[more]
A0A6J1CVU2	1.5e-105	80.71	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1J6M3	2.0e-102	77.88	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F3Q2	4.9e-101	77.17	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FP65	2.0e-99	77.71	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 343..362
None	No IPR available	COILS	Coil	Coil	coord: 223..243
None	No IPR available	COILS	Coil	Coil	coord: 182..209
None	No IPR available	COILS	Coil	Coil	coord: 283..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..309
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 2..247
None	No IPR available	PROSITE	PS50890	PUA	coord: 22..97 score: 18.908768
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 23..97 e-value: 1.0E-23 score: 94.8
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 23..95 e-value: 5.8E-21 score: 74.2
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 19..94 e-value: 3.2E-8 score: 31.7
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 2..132 e-value: 3.0E-52 score: 178.6
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 2..247
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 22..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000926	Bhi08M000926	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0006396	RNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding