Bhi08G000463 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G000463
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr8: 18634585 .. 18634803 (-)
RNA-Seq Expression	Bhi08G000463
Synteny	Bhi08G000463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAATCAGTCCAATCCTTCAGCACACACCCCTCGAAGCTCTTATGGATATACACAACCACCAAAGTTTAGGGGTGGAGGAGGTCGCAACAGGGGTCGTGGTCATTGGAATAATGCATCCACAACTACACCAACCTGCCAAACATGTGGAAAACTTGGGCATACAGCTGATGTTTGTTACTTCAGATACAACAAGGAGTTCAACAACCCCAGATAA

mRNA sequence

ATGCATAATCAGTCCAATCCTTCAGCACACACCCCTCGAAGCTCTTATGGATATACACAACCACCAAAGTTTAGGGGTGGAGGAGGTCGCAACAGGGGTCGTGGTCATTGGAATAATGCATCCACAACTACACCAACCTGCCAAACATGTGGAAAACTTGGGCATACAGCTGATGTTTGTTACTTCAGATACAACAAGGAGTTCAACAACCCCAGATAA

Coding sequence (CDS)

ATGCATAATCAGTCCAATCCTTCAGCACACACCCCTCGAAGCTCTTATGGATATACACAACCACCAAAGTTTAGGGGTGGAGGAGGTCGCAACAGGGGTCGTGGTCATTGGAATAATGCATCCACAACTACACCAACCTGCCAAACATGTGGAAAACTTGGGCATACAGCTGATGTTTGTTACTTCAGATACAACAAGGAGTTCAACAACCCCAGATAA

Protein sequence

MHNQSNPSAHTPRSSYGYTQPPKFRGGGGRNRGRGHWNNASTTTPTCQTCGKLGHTADVCYFRYNKEFNNPR

Homology

[Close]

BLAST of Bhi08G000463 vs. ExPASy TrEMBL
Match: A0A5C7ID32 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_008518 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5   SNPSAHTPRSSYGYTQPPK---FRGGGGRNRGRGHWNNASTTTPTCQTCGKLGHTADVCY 64
           +N +++    + G  + P    FRGGGGR RGRG  NN S   PTCQ CGK GH+A VCY
Sbjct: 278 TNKTSNQQNLNQGGNRAPNRGGFRGGGGRFRGRGGRNNNS--RPTCQVCGKFGHSASVCY 337

Query: 65  FRYNKEF 69
           FRY+  +
Sbjct: 338 FRYDDNY 342

[Close]

BLAST of Bhi08G000463 vs. ExPASy TrEMBL
Match: A0A5C7IJ06 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004188 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5   SNPSAHTPRSSYGYTQPPK---FRGGGGRNRGRGHWNNASTTTPTCQTCGKLGHTADVCY 64
           +N +++    + G  + P    FRGGGGR RGRG  NN S   PTCQ CGK GH+A VCY
Sbjct: 278 TNKTSNQQNLNQGGNRAPNRGGFRGGGGRFRGRGGRNNNS--RPTCQVCGKFGHSASVCY 337

Query: 65  FRYNKEF 69
           FRY+  +
Sbjct: 338 FRYDDNY 342

[Close]

BLAST of Bhi08G000463 vs. ExPASy TrEMBL
Match: A0A5C7HHE9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020902 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 5   SNPSAHTPRSSYGYTQPPK---FRGGGGRNRGRGHWNNASTTTPTCQTCGKLGHTADVCY 64
           +N +++    + G  + P    FRGGGGR RGRG  NN S   PTCQ CGK GH+A VCY
Sbjct: 270 TNKTSNQQNLNQGGNRAPNRGGFRGGGGRFRGRGGRNNNS--RPTCQVCGKFGHSASVCY 329

Query: 65  FRYNKEF 69
           FRY+  +
Sbjct: 330 FRYDDNY 334

[Close]

BLAST of Bhi08G000463 vs. ExPASy TrEMBL
Match: A0A803P4G6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 35/73 (47.95%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 3   NQSNPSAHTPRSSYG---YTQPPKFRGGG----GRNRGRGHWNNASTTTPTCQTCGKLGH 62
           +Q+N  A TP    G   Y+Q      GG    GR+RGRG +NN S   PTCQ CGK GH
Sbjct: 198 SQANMVAKTPPQGRGRGFYSQNQTNNNGGRGSRGRSRGRGRYNNNS--RPTCQVCGKFGH 257

Query: 63  TADVCYFRYNKEF 69
           +A VCY RY++ F
Sbjct: 258 SAAVCYNRYDENF 268

[Close]

BLAST of Bhi08G000463 vs. ExPASy TrEMBL
Match: A0A803NZ12 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 26  GGGGRNRGRGHWNNASTTTPTCQTCGKLGHTADVCYFRYNKEF 69
           G  GR+RGRG +NN S   PTCQ CGK GH+A VCY RY++ F
Sbjct: 294 GSRGRSRGRGRFNNNS--RPTCQVCGKFGHSAAVCYNRYDENF 334

The following BLAST results are available for this feature:

BLAST of Bhi08G000463 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G000463 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G000463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7ID32	9.0e-07	49.25	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_008518 PE=4 SV=1	[more]
A0A5C7IJ06	9.0e-07	49.25	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004188 PE=4 SV=1	[more]
A0A5C7HHE9	9.0e-07	49.25	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020902 PE=4 SV=1	[more]
A0A803P4G6	1.7e-05	47.95	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803NZ12	8.4e-05	60.47	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 28..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000463	Bhi08M000463	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding