Bhi08G000369 (gene) Wax gourd (B227) v1

Overview
NameBhi08G000369
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr8: 15368650 .. 15369051 (-)
RNA-Seq ExpressionBhi08G000369
SyntenyBhi08G000369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATATCCTCAAACTCTCCATTAGTAAATGTAGTACAAAATAGTCCTAATTCTCCATCAAACTCCCATCAAAACACCTATGGATACAATCAGTCCTCAAACTATAGAGGTGGAGGAGGAAGAAGTAGAGGGCGCGGTCGATTGAATAATGCATCTACAACCAGGCCTACCTGCCAAACTTGTGGAAAGATAGGCCACACAACTGATATCTGTTATTTCAGGTACAACAAAGAGTTCAATAATCCTAGACAGACTCATACTCGAGCTGAATCTACTCAGCTACCATCAAATAGACACCAAGAACAGCCCTTCTTAGCCTTAATTGCTCACTTAACAGCTGCCTCCCTTGAAATAATAGCTGACCCTAACTGGTATGTTGACAGTGGAGGCTCAACACAT

mRNA sequence

ATGTCTATATCCTCAAACTCTCCATTAGTAAATGTAGTACAAAATAGTCCTAATTCTCCATCAAACTCCCATCAAAACACCTATGGATACAATCAGTCCTCAAACTATAGAGGTGGAGGAGGAAGAAGTAGAGGGCGCGGTCGATTGAATAATGCATCTACAACCAGGCCTACCTGCCAAACTTGTGGAAAGATAGGCCACACAACTGATATCTGTTATTTCAGGTACAACAAAGAGTTCAATAATCCTAGACAGACTCATACTCGAGCTGAATCTACTCAGCTACCATCAAATAGACACCAAGAACAGCCCTTCTTAGCCTTAATTGCTCACTTAACAGCTGCCTCCCTTGAAATAATAGCTGACCCTAACTGGTATGTTGACAGTGGAGGCTCAACACAT

Coding sequence (CDS)

ATGTCTATATCCTCAAACTCTCCATTAGTAAATGTAGTACAAAATAGTCCTAATTCTCCATCAAACTCCCATCAAAACACCTATGGATACAATCAGTCCTCAAACTATAGAGGTGGAGGAGGAAGAAGTAGAGGGCGCGGTCGATTGAATAATGCATCTACAACCAGGCCTACCTGCCAAACTTGTGGAAAGATAGGCCACACAACTGATATCTGTTATTTCAGGTACAACAAAGAGTTCAATAATCCTAGACAGACTCATACTCGAGCTGAATCTACTCAGCTACCATCAAATAGACACCAAGAACAGCCCTTCTTAGCCTTAATTGCTCACTTAACAGCTGCCTCCCTTGAAATAATAGCTGACCCTAACTGGTATGTTGACAGTGGAGGCTCAACACAT

Protein sequence

MSISSNSPLVNVVQNSPNSPSNSHQNTYGYNQSSNYRGGGGRSRGRGRLNNASTTRPTCQTCGKIGHTTDICYFRYNKEFNNPRQTHTRAESTQLPSNRHQEQPFLALIAHLTAASLEIIADPNWYVDSGGSTH
Homology
BLAST of Bhi08G000369 vs. ExPASy TrEMBL
Match: A0A5C7IJ06 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004188 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 6   NSPLVNVVQNSPNSPSNSHQ--NTYGYNQSSN-------YRGGGGRSRGRGRLNNASTTR 65
           +SP  ++  N PN+  N+++  N    NQ  N       +RGGGGR RGRG  NN S  R
Sbjct: 261 SSPSAHLATNKPNNTPNTNKTSNQQNLNQGGNRAPNRGGFRGGGGRFRGRGGRNNNS--R 320

Query: 66  PTCQTCGKIGHTTDICYFRYNKEFNNPRQTHTRAESTQLPSNRHQEQPFLALIAHLTAAS 125
           PTCQ CGK GH+  +CYFRY+  +     T          SN +    F+        A+
Sbjct: 321 PTCQVCGKFGHSASVCYFRYDDNYMGSVPTAN--------SNANSPSVFV--------AT 380

Query: 126 LEIIADPNWYVDSGGSTH 135
            E + D  WY DSG + H
Sbjct: 381 PETVDDTTWYADSGATNH 380

BLAST of Bhi08G000369 vs. ExPASy TrEMBL
Match: A0A5C7HHE9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020902 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 6   NSPLVNVVQNSPNSPSNSHQ--NTYGYNQSSN-------YRGGGGRSRGRGRLNNASTTR 65
           +SP  ++  N PN+  N+++  N    NQ  N       +RGGGGR RGRG  NN S  R
Sbjct: 253 SSPSAHLATNKPNNTPNTNKTSNQQNLNQGGNRAPNRGGFRGGGGRFRGRGGRNNNS--R 312

Query: 66  PTCQTCGKIGHTTDICYFRYNKEFNNPRQTHTRAESTQLPSNRHQEQPFLALIAHLTAAS 125
           PTCQ CGK GH+  +CYFRY+  +     T          SN +    F+        A+
Sbjct: 313 PTCQVCGKFGHSASVCYFRYDDNYMGSVPTAN--------SNANSPSVFV--------AT 372

Query: 126 LEIIADPNWYVDSGGSTH 135
            E + D  WY DSG + H
Sbjct: 373 PETVDDTTWYADSGATNH 372

BLAST of Bhi08G000369 vs. ExPASy TrEMBL
Match: A0A5C7ID32 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_008518 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.6e-10
Identity = 51/138 (36.96%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 6   NSPLVNVVQNSPNSPSNSHQ--NTYGYNQSSN-------YRGGGGRSRGRGRLNNASTTR 65
           +SP  ++  N PN+  N+++  N    NQ  N       +RGGGGR RGRG  NN S  R
Sbjct: 261 SSPSAHLATNKPNNTPNTNKTSNQQNLNQGGNRAPNRGGFRGGGGRFRGRGGRNNNS--R 320

Query: 66  PTCQTCGKIGHTTDICYFRYNKEFNNPRQTHTRAESTQLPSNRHQEQPFLALIAHLTAAS 125
           PTCQ CGK GH+  +CYFRY+  +     T          SN +    F+        A+
Sbjct: 321 PTCQVCGKFGHSASVCYFRYDDNYMGSVPTAN--------SNANSPSVFV--------AT 380

Query: 126 LEIIADPNWYVDSGGSTH 135
            E + D  WY DSG + H
Sbjct: 381 PETVDDTTWYADSGATDH 380

BLAST of Bhi08G000369 vs. ExPASy TrEMBL
Match: A0A444Y0U9 (Integrase catalytic domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g090889 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.7e-09
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 0

Query: 18  NSPSNSHQNTYGYNQSSNYRGGGGRSRGRGRLNNASTTRPTCQTCGKIGHTTDICYFRYN 77
           N+P   ++ TYG       RG GGR+  RG   + ++ RP CQ CGK+GH    CYFR++
Sbjct: 254 NTPPTPNRGTYG------RRGRGGRT-NRGGRGSWNSNRPQCQICGKLGHIASYCYFRFD 313

Query: 78  KEFNNPRQ---THTRAESTQLPSNRHQEQPFLALIAHLTAASLEIIADPNWYVDSGGSTH 135
           ++F + +Q   T +   +  LP + H  +  LA  A         IADP+WY DSG S H
Sbjct: 314 QQFQHAQQNSPTSSMHNALPLPPSFHNPKAMLATPA--------TIADPSWYADSGASHH 358

BLAST of Bhi08G000369 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 0

Query: 5   SNSPLVNVVQNSPNSPSNSHQNT--YGYNQSSNYRGGGGRSRGRGRLNNASTTRPTCQTC 64
           + SP +N+ Q    +   +H N   YGYN+          S  RG LNN     PTCQ C
Sbjct: 256 TQSPALNMAQRFALNGQRNHSNKKFYGYNRQH-------FSGQRGNLNNG----PTCQLC 315

Query: 65  GKIGHTTDICYFRYNKEFNNPRQTHTRAESTQLPSNRHQEQPFLALIAHLTAASLEIIAD 124
           GK GH+  +CY R+NKEF++P     R E +   S       F++       A+ + + D
Sbjct: 316 GKYGHSALVCYNRFNKEFSSP-LVQDRNEHSSNGSVSPNPAVFVSTQNATPFATPDTVVD 375

Query: 125 PNWYVDSGGSTH 135
           PNWY+DSG + H
Sbjct: 376 PNWYIDSGATNH 375

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7IJ064.2e-1036.96Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004188 PE=4 SV=1[more]
A0A5C7HHE94.2e-1036.96Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020902 PE=4 SV=1[more]
A0A5C7ID325.6e-1036.96Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_008518 PE=4 SV=1[more]
A0A444Y0U94.7e-0937.50Integrase catalytic domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy... [more]
A0A5A7SIT71.4e-0835.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000369Bhi08M000369mRNA