Bhi08G000278 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G000278
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	CCHC-type domain-containing protein
Location	chr8: 11562923 .. 11563078 (-)
RNA-Seq Expression	Bhi08G000278
Synteny	Bhi08G000278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGAGAATTGCAAGTGCAATCAAGCTAAATTTGGTTAAGAATGTTCTTGCAAATGTGCATGGAATTTCAATAGCCAAAGAGTTTTGGGAGAAGCTTGAAGCAATGTATGACACAAAAAGCATCTCAAATCGGTTGTACCTGAAAGAGTAG

mRNA sequence

ATGGATTTGAGAATTGCAAGTGCAATCAAGCTAAATTTGGTTAAGAATGTTCTTGCAAATGTGCATGGAATTTCAATAGCCAAAGAGTTTTGGGAGAAGCTTGAAGCAATGTATGACACAAAAAGCATCTCAAATCGGTTGTACCTGAAAGAGTAG

Coding sequence (CDS)

ATGGATTTGAGAATTGCAAGTGCAATCAAGCTAAATTTGGTTAAGAATGTTCTTGCAAATGTGCATGGAATTTCAATAGCCAAAGAGTTTTGGGAGAAGCTTGAAGCAATGTATGACACAAAAAGCATCTCAAATCGGTTGTACCTGAAAGAGTAG

Protein sequence

MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE

Homology

[Close]

BLAST of Bhi08G000278 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-04
Identity = 21/51 (41.18%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1   MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE 52
           +D R ASAI+L+L  +V+ N+     A+  W +LE++Y +K+++N+LYLK+
Sbjct: 55  LDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKK 105

[Close]

BLAST of Bhi08G000278 vs. ExPASy TrEMBL
Match: A0A6P9EJZ4 (uncharacterized protein LOC118346128 OS=Juglans regia OX=51240 GN=LOC118346128 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.6e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE 52
          +DLR ASAI+L L KNVLAN+HGIS AKE WEKLE +Y TK +SNR+YLKE
Sbjct: 41 LDLRAASAIRLCLAKNVLANIHGISTAKELWEKLEELYQTKGVSNRVYLKE 91

[Close]

BLAST of Bhi08G000278 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE 52
           MDLR ASAI+ +L KN+LANVH IS AKE WEKLEA+Y  K ISNRLYLKE
Sbjct: 377 MDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRLYLKE 427

[Close]

BLAST of Bhi08G000278 vs. ExPASy TrEMBL
Match: A0A444X3K2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE 52
           +DLR ASAI+L L KNVLANV G+ IAKE W+KLE +Y  K ISNRL LKE
Sbjct: 95  LDLRAASAIRLCLAKNVLANVQGMKIAKELWDKLEGLYQAKGISNRLLLKE 145

[Close]

BLAST of Bhi08G000278 vs. ExPASy TrEMBL
Match: V4T614 (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023471mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE 52
          +D R ASAI+L L KNVLANV  I  AKE WEKLE +Y TKSISNRLYLKE
Sbjct: 36 LDDRAASAIRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISNRLYLKE 86

[Close]

BLAST of Bhi08G000278 vs. ExPASy TrEMBL
Match: A0A2K3L7F8 (Cytochrome p450 OS=Trifolium pratense OX=57577 GN=L195_g030394 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.9e-09
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1   MDLRIASAIKLNLVKNVLANVHGISIAKEFWEKLEAMYDTKSISNRLYLKE 52
           +DLR ASAI+L L KNVLANV+ +S AKE WE+LE +Y  K ISNRL LKE
Sbjct: 55  LDLRAASAIRLCLAKNVLANVYNLSSAKELWERLERLYQAKDISNRLLLKE 105

The following BLAST results are available for this feature:

BLAST of Bhi08G000278 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G000278 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-04	41.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Bhi08G000278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9EJZ4	8.6e-12	72.55	uncharacterized protein LOC118346128 OS=Juglans regia OX=51240 GN=LOC118346128 P...	[more]
A0A6J1CG82	1.5e-11	74.51	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A444X3K2	1.8e-09	68.63	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g103423 PE=4 SV=1	[more]
V4T614	1.8e-09	72.55	Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10023...	[more]
A0A2K3L7F8	8.9e-09	66.67	Cytochrome p450 OS=Trifolium pratense OX=57577 GN=L195_g030394 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 4..51 e-value: 2.9E-6 score: 27.1
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..51
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000278	Bhi08M000278	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding