Bhi08G000016 (gene) Wax gourd (B227) v1

Overview
NameBhi08G000016
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionUnplaced genomic scaffold GYMLUscaffold_233, whole genome shotgun sequence
Locationchr8: 270987 .. 271226 (-)
RNA-Seq ExpressionBhi08G000016
SyntenyBhi08G000016
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGA

mRNA sequence

ATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGA

Coding sequence (CDS)

ATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGA

Protein sequence

MSALPIIVKQNSPSVGLFTTNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRALDYD
Homology
[Close]
BLAST of Bhi08G000016 vs. ExPASy TrEMBL
Match: C1NAM8 (Predicted protein (Fragment) OS=Micromonas pusilla (strain CCMP1545) OX=564608 GN=MICPUCDRAFT_23888 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 20 TNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRALDYD 68
          TNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRALDYD
Sbjct: 8  TNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRALDYD 55

[Close]
BLAST of Bhi08G000016 vs. ExPASy TrEMBL
Match: A0A2N0QVT2 (Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=RhiirA1_354695 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0 

Query: 20 TNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRALDYD 68
          TNRERELGLDRRETVIQPSTRGTVDSH+WSSRLVEKPVARSYRALDYD
Sbjct: 6  TNRERELGLDRRETVIQPSTRGTVDSHSWSSRLVEKPVARSYRALDYD 53

[Close]
BLAST of Bhi08G000016 vs. ExPASy TrEMBL
Match: A0A2K3LLK8 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g035402 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 49/79 (62.03%), Postives = 51/79 (64.56%), Query Frame = 0 

Query: 1   MSALPIIVKQNSPSVGLFTTNRERELGL------------DRRETVIQPSTRGTVDSHNW 60
           MSALPIIVK NSPSV    TN+E EL L            D   TVIQP+T  TVD HNW
Sbjct: 86  MSALPIIVKHNSPSVDYSPTNKEHELSLYCCGPDYFYTTGDNVTTVIQPNTSETVDLHNW 145

Query: 61  SSRLVEKPVARSYRALDYD 68
           SSRLVE  VARSY ALDYD
Sbjct: 146 SSRLVEMSVARSYSALDYD 164

[Close]
BLAST of Bhi08G000016 vs. ExPASy TrEMBL
Match: A0A1Y1UXD4 (Uncharacterized protein (Fragment) OS=Piromyces finnis OX=1754191 GN=BCR36DRAFT_293641 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 20 TNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRA 64
          TNRERELGLDRRETVIQ STRGTVDSHNW  RLVEK V RSY A
Sbjct: 6  TNRERELGLDRRETVIQFSTRGTVDSHNWYLRLVEKLVPRSYHA 49

[Close]
BLAST of Bhi08G000016 vs. ExPASy TrEMBL
Match: A0A1Y1XXX4 (Uncharacterized protein (Fragment) OS=Neocallimastix californiae OX=1754190 GN=LY90DRAFT_445758 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0 

Query: 20 TNRERELGLDRRETVIQPSTRGTVDSHNWSSRLVEKPVARSYRA 64
          TNRERELGLDRRETVIQ STRGTVDSHNW  RLVEK V RSY A
Sbjct: 6  TNRERELGLDRRETVIQFSTRGTVDSHNWYLRLVEKLVPRSYHA 49

The following BLAST results are available for this feature:
BLAST of Bhi08G000016 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi08G000016 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi08G000016 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
C1NAM82.1e-18100.00Predicted protein (Fragment) OS=Micromonas pusilla (strain CCMP1545) OX=564608 G... [more]
A0A2N0QVT28.1e-1897.92Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=Rhiir... [more]
A0A2K3LLK84.1e-1462.03Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g035402 PE=4 SV=1[more]
A0A1Y1UXD41.2e-1086.36Uncharacterized protein (Fragment) OS=Piromyces finnis OX=1754191 GN=BCR36DRAFT_... [more]
A0A1Y1XXX41.2e-1086.36Uncharacterized protein (Fragment) OS=Neocallimastix californiae OX=1754190 GN=L... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M000016Bhi08M000016mRNA