Bhi07G001345 (gene) Wax gourd (B227) v1

Overview
NameBhi07G001345
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCytochrome c oxidase subunit 2
Locationchr7: 46743788 .. 46744036 (-)
RNA-Seq ExpressionBhi07G001345
SyntenyBhi07G001345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCAGACTTATGAGTATTCTGACTATAACAATTCCGATGAACAGTCACTCACTTTGGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTACTAATGTACCTCATAGATAA

mRNA sequence

ATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCAGACTTATGAGTATTCTGACTATAACAATTCCGATGAACAGTCACTCACTTTGGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTACTAATGTACCTCATAGATAA

Coding sequence (CDS)

ATGGACGAGGTAGTAGTAGATCCAGCCATGACTATCAAAGCTATTGGACATCAATGGTATCAGACTTATGAGTATTCTGACTATAACAATTCCGATGAACAGTCACTCACTTTGGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTCTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTACTAATGTACCTCATAGATAA

Protein sequence

MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPTNVPHR
Homology
[Close]
BLAST of Bhi07G001345 vs. TAIR 10
Match: ATMG00160.1 (cytochrome oxidase 2 )

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-36
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWY+TYEYSDYN+SDEQSLT DSY IPE+DLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVV+PAKTHLRIIVT  +VPH
Sbjct: 167 RVVVPAKTHLRIIVTSADVPH 187

[Close]
BLAST of Bhi07G001345 vs. ExPASy Swiss-Prot
Match: P05491 (Cytochrome c oxidase subunit 2 OS=Glycine max OX=3847 GN=COX2 PE=3 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 5.4e-37
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQSRLLEVDN
Sbjct: 106 MDEVVVDPAITIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 165

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVV+PAKTHLRIIVTP +VPH
Sbjct: 166 RVVVPAKTHLRIIVTPADVPH 186

[Close]
BLAST of Bhi07G001345 vs. ExPASy Swiss-Prot
Match: P27168 (Cytochrome c oxidase subunit 2 OS=Daucus carota OX=4039 GN=COX2 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-35
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDD ELGQSRLLEVDN
Sbjct: 108 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 167

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVV+PAKTHLRIIVT  +VPH
Sbjct: 168 RVVVPAKTHLRIIVTSADVPH 188

[Close]
BLAST of Bhi07G001345 vs. ExPASy Swiss-Prot
Match: P08744 (Cytochrome c oxidase subunit 2 OS=Pisum sativum OX=3888 GN=COX2 PE=3 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-35
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MD V+VDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQS LLEVDN
Sbjct: 106 MDGVLVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSGLLEVDN 165

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVV+PAKTHLRIIVTP +VPH
Sbjct: 166 RVVVPAKTHLRIIVTPADVPH 186

[Close]
BLAST of Bhi07G001345 vs. ExPASy Swiss-Prot
Match: P98012 (Cytochrome c oxidase subunit 2 OS=Beta vulgaris OX=161934 GN=COX2 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.1e-33
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPA+TIKAIGHQWY++YEYSDYN+SDEQSLT DSYTIPEDD ELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVV+PAKTH+RIIVT  +V H
Sbjct: 167 RVVVPAKTHIRIIVTSADVLH 187

[Close]
BLAST of Bhi07G001345 vs. ExPASy Swiss-Prot
Match: P00413 (Cytochrome c oxidase subunit 2 OS=Triticum aestivum OX=4565 GN=COX2 PE=2 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 3.6e-33
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MD V+VDPA+TIKAIGHQWY TYEYSDYN+SDEQSLT DSYTIPEDD ELGQSRLLEVDN
Sbjct: 109 MDGVLVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDN 168

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVV+PAKTHLR+IVTP +V H
Sbjct: 169 RVVVPAKTHLRMIVTPADVLH 189

[Close]
BLAST of Bhi07G001345 vs. ExPASy TrEMBL
Match: A0A7D6C0E1 (Cytochrome c oxidase subunit 2 OS=Luffa acutangula OX=56866 GN=cox2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVVLPAKTHLRIIVTP +VPH
Sbjct: 167 RVVLPAKTHLRIIVTPADVPH 187

[Close]
BLAST of Bhi07G001345 vs. ExPASy TrEMBL
Match: A0A5A7SRN3 (Cytochrome-c oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43632G00010 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
          MDEVVVDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQSRLLEVDN
Sbjct: 14 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 73

Query: 61 RVVLPAKTHLRIIVTPTNVPH 82
          RVVLPAKTHLRIIVTP +VPH
Sbjct: 74 RVVLPAKTHLRIIVTPADVPH 94

[Close]
BLAST of Bhi07G001345 vs. ExPASy TrEMBL
Match: G3EU21 (Cytochrome c oxidase subunit 2 OS=Cucumis melo subsp. melo OX=412675 GN=cox2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVVLPAKTHLRIIVTP +VPH
Sbjct: 167 RVVLPAKTHLRIIVTPADVPH 187

[Close]
BLAST of Bhi07G001345 vs. ExPASy TrEMBL
Match: G3EJ04 (Cytochrome c oxidase subunit 2 OS=Cucumis sativus OX=3659 GN=cox2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVVLPAKTHLRIIVTP +VPH
Sbjct: 167 RVVLPAKTHLRIIVTPADVPH 187

[Close]
BLAST of Bhi07G001345 vs. ExPASy TrEMBL
Match: A0A3S9JIH4 (Cytochrome c oxidase subunit 2 OS=Cucumis melo var. momordica OX=2034244 GN=cox2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-35
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MDEVVVDPAMTIKAIGHQWYQTYEYSDYNNSDEQSLTLDSYTIPEDDLELGQSRLLEVDN 60
           MDEVVVDPAMTIKAIGHQWY+TYEYSDYN+SDEQSLT DSYTIPEDDLELGQSRLLEVDN
Sbjct: 107 MDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDN 166

Query: 61  RVVLPAKTHLRIIVTPTNVPH 82
           RVVLPAKTHLRIIVTP +VPH
Sbjct: 167 RVVLPAKTHLRIIVTPADVPH 187

The following BLAST results are available for this feature:
BLAST of Bhi07G001345 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00160.14.7e-3687.65cytochrome oxidase 2 [more]
BLAST of Bhi07G001345 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P054915.4e-3791.36Cytochrome c oxidase subunit 2 OS=Glycine max OX=3847 GN=COX2 PE=3 SV=2[more]
P271681.0e-3590.12Cytochrome c oxidase subunit 2 OS=Daucus carota OX=4039 GN=COX2 PE=3 SV=1[more]
P087441.7e-3588.89Cytochrome c oxidase subunit 2 OS=Pisum sativum OX=3888 GN=COX2 PE=3 SV=2[more]
P980122.1e-3385.19Cytochrome c oxidase subunit 2 OS=Beta vulgaris OX=161934 GN=COX2 PE=2 SV=1[more]
P004133.6e-3385.19Cytochrome c oxidase subunit 2 OS=Triticum aestivum OX=4565 GN=COX2 PE=2 SV=2[more]
BLAST of Bhi07G001345 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7D6C0E13.1e-3593.83Cytochrome c oxidase subunit 2 OS=Luffa acutangula OX=56866 GN=cox2 PE=3 SV=1[more]
A0A5A7SRN33.1e-3593.83Cytochrome-c oxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold436... [more]
G3EU213.1e-3593.83Cytochrome c oxidase subunit 2 OS=Cucumis melo subsp. melo OX=412675 GN=cox2 PE=... [more]
G3EJ043.1e-3593.83Cytochrome c oxidase subunit 2 OS=Cucumis sativus OX=3659 GN=cox2 PE=3 SV=1[more]
A0A3S9JIH43.1e-3593.83Cytochrome c oxidase subunit 2 OS=Cucumis melo var. momordica OX=2034244 GN=cox2... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01166CYCOXIDASEIIcoord: 6..25
score: 64.23
coord: 54..75
score: 61.01
NoneNo IPR availablePANTHERPTHR22888CYTOCHROME C OXIDASE, SUBUNIT IIcoord: 1..81
IPR002429Cytochrome c oxidase subunit II-like C-terminalPFAMPF00116COX2coord: 10..81
e-value: 2.8E-23
score: 82.1
IPR002429Cytochrome c oxidase subunit II-like C-terminalPROSITEPS50857COX2_CUAcoord: 7..82
score: 21.355858
IPR008972CupredoxinGENE3D2.60.40.420coord: 7..82
e-value: 7.5E-16
score: 60.3
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 7..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi07M001345Bhi07M001345mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respirasome
cellular_component GO:0016020 membrane
molecular_function GO:0005507 copper ion binding
molecular_function GO:0004129 cytochrome-c oxidase activity