Bhi07G000937 (gene) Wax gourd (B227) v1

Overview
NameBhi07G000937
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr7: 35344811 .. 35345163 (-)
RNA-Seq ExpressionBhi07G000937
SyntenyBhi07G000937
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGAAGAAATTGGATCGAAGGGATTTTATGATGCAGGGGTTTGGAAAGAAAAAGAGGAGGATGTAACTAAGTTGATCTCTAACTATTTCAAATCTATTTTCCAAACCTGTAATCCAAGCTCTGAGGAGATTAATAGAATTTTGAAGGGGGTCCCAAGGAGGGTCTCAGATAAAGAGAATCAAGAGTTGATCAAACTATTTACAAGGGGTGAGATCGAAGCGATTATTAAAACTATGAACCCGTTAAAAGCTCATGGCCTTGATAGAGCCTATGCAATGTTTTTTCAAACATATTGGGACAATGTTGATGATGAAACAATGAATATTTGTCTTAGTGTTCTCAATGAGGGG

mRNA sequence

GGAAAGAAGAAATTGGATCGAAGGGATTTTATGATGCAGGGGTTTGGAAAGAAAAAGAGGAGGATGTAACTAAGTTGATCTCTAACTATTTCAAATCTATTTTCCAAACCTGTAATCCAAGCTCTGAGGAGATTAATAGAATTTTGAAGGGGGTCCCAAGGAGGGTCTCAGATAAAGAGAATCAAGAGTTGATCAAACTATTTACAAGGGGTGAGATCGAAGCGATTATTAAAACTATGAACCCGTTAAAAGCTCATGGCCTTGATAGAGCCTATGCAATGTTTTTTCAAACATATTGGGACAATGTTGATGATGAAACAATGAATATTTGTCTTAGTGTTCTCAATGAGGGG

Coding sequence (CDS)

GGAAAGAAGAAATTGGATCGAAGGGATTTTATGATGCAGGGGTTTGGAAAGAAAAAGAGGAGGATGTAACTAAGTTGATCTCTAACTATTTCAAATCTATTTTCCAAACCTGTAATCCAAGCTCTGAGGAGATTAATAGAATTTTGAAGGGGGTCCCAAGGAGGGTCTCAGATAAAGAGAATCAAGAGTTGATCAAACTATTTACAAGGGGTGAGATCGAAGCGATTATTAAAACTATGAACCCGTTAAAAGCTCATGGCCTTGATAGAGCCTATGCAATGTTTTTTCAAACATATTGGGACAATGTTGATGATGAAACAATGAATATTTGTCTTAGTGTTCTCAATGAGGGG

Protein sequence

KEEIGSKGFYDAGVWKEKEEDVTKLISNYFKSIFQTCNPSSEEINRILKGVPRRVSDKENQELIKLFTRGEIEAIIKTMNPLKAHGLDRAYAMFFQTYWDNVDDETMNICLSVLNEG
Homology
BLAST of Bhi07G000937 vs. ExPASy TrEMBL
Match: A0A5D3CX81 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00790 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-16
Identity = 41/97 (42.27%), Postives = 67/97 (69.07%), Query Frame = 0

Query: 19  EEDVTKLISNYFKSIFQTCNPSSEEINRILKGVPRRVSDKENQELIKLFTRGEIEAIIKT 78
           EE +     +YF + +++  P+S++++R+L+G+   +S K+NQ L   FT+ EIE ++K 
Sbjct: 22  EEAIGYEAIHYFTTCYKSSKPNSDDVDRVLEGIEPTISAKQNQILDVAFTKEEIERVLKQ 81

Query: 79  MNPLKAHGLDRAYAMFFQTYWDNVDDETMNICLSVLN 116
           M+P KA GLD A+A+FFQ YWD +  +  NICL++LN
Sbjct: 82  MHPTKAPGLDGAHALFFQYYWDIIGSDVTNICLNILN 118

BLAST of Bhi07G000937 vs. ExPASy TrEMBL
Match: A0A803PYI0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.2e-14
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 11  DAGVWKEKEEDVTKLISNYFKSIFQTCNPSSEEINRILKGVPRRVSDKENQELIKLFTRG 70
           D GVW  +   V +L+ NYF++IF++ +   +    ++  +P +V+D  N+ L++ FT  
Sbjct: 798 DMGVWHSEAGMVQRLVENYFRNIFRSSSMPHDVFEEVINVIPPKVTDDMNEMLLEDFTAK 857

Query: 71  EIEAIIKTMNPLKAHGLDRAYAMFFQTYWDNVDDETMNICLSVLNEG 118
           EI   +K MNP KA G +   A+F+Q +W N+  + + +CL VLN+G
Sbjct: 858 EIVKAVKDMNPTKAPGCNGLPALFYQKFWSNLKQDVIGMCLKVLNQG 904

BLAST of Bhi07G000937 vs. ExPASy TrEMBL
Match: A0A2N9GPZ7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29430 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 13  GVWKEKEEDVTKLISNYFKSIFQTCNPSSEEINRILKGVPRRVSDKENQELIKLFTRGEI 72
           GVW+ ++  + ++  +YF+ IF + NPS+E I  +L+G+   V++  N +L   FT+ E+
Sbjct: 249 GVWQTEKTKIAEIAVDYFQGIFTSSNPSAESITTVLQGMESVVTNAMNDQLQAEFTKDEV 308

Query: 73  EAIIKTMNPLKAHGLDRAYAMFFQTYWDNVDDETMNICLSVLNEG 118
              +K M P KA G D   A+F+QTYWD V  E     LS+L+ G
Sbjct: 309 SLALKQMYPTKAPGPDGMSAIFYQTYWDIVGPEVTQAILSILHSG 353

BLAST of Bhi07G000937 vs. ExPASy TrEMBL
Match: A0A2N9IPS8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55418 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 0

Query: 13  GVWKEKEEDVTKLISNYFKSIFQTCNPSSEEINRILKGVPRRVSDKENQELIKLFTRGEI 72
           GVW+ ++  + ++  +YF+ IF + NPS+E I  +L+G+   V++  N +L   FT+ E+
Sbjct: 824 GVWQTEKTKIAEIAVDYFQGIFTSSNPSAESITTVLQGMESVVTNAMNDQLQAEFTKDEV 883

Query: 73  EAIIKTMNPLKAHGLDRAYAMFFQTYWDNVDDETMNICLSVLNEG 118
              +K M P KA G D   A+F+QTYWD V  E     LS+L+ G
Sbjct: 884 SLALKQMYPTKAPGPDGMSAIFYQTYWDIVGPEVTQAILSILHSG 928

BLAST of Bhi07G000937 vs. ExPASy TrEMBL
Match: A0A2N9HPU0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44029 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 47/107 (43.93%), Postives = 60/107 (56.07%), Query Frame = 0

Query: 11  DAGVWKEKEEDVTKLISNYFKSIFQTCNPSSEEINRILKGVPRRVSDKENQELIKLFTRG 70
           D GVW+E++ +VT LI  +F+SIF+T  P  E I   +  VP  +S + N  L   FT  
Sbjct: 396 DQGVWREEKSEVTGLIMQHFESIFRTSIP--ENIEEAVAHVPNLISQEVNTSLTSEFTAR 455

Query: 71  EIEAIIKTMNPLKAHGLDRAYAMFFQTYWDNVDDETMNICLSVLNEG 118
           E+E  +K M PLKA G D    +FFQTYW  V  E     LS LN G
Sbjct: 456 EVELALKQMAPLKAPGPDGMPPLFFQTYWKVVGPEVTQGVLSCLNSG 500

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CX815.9e-1642.27Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
A0A803PYI03.2e-1435.51Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9GPZ71.6e-1338.10Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9IPS81.6e-1338.10Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9HPU02.1e-1343.93Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44029 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 12..116
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 12..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi07M000937Bhi07M000937mRNA