Bhi07G000077 (gene) Wax gourd (B227) v1

Overview
NameBhi07G000077
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr7: 4886452 .. 4886871 (+)
RNA-Seq ExpressionBhi07G000077
SyntenyBhi07G000077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAATCAATAGAAGAACACATTATTCACATGGTGTACACCTACAACTGGTTTAAAAGTATGGATGTGGATCTTGGTGAGGGAGTGTTAGTTGGGTTTTTGTTGAAATCATGTAAGGATGATAATTTCAAGCAATTTTGGAGAACTTACAACCATCTTAAGGAAAAATTTTCTCTTTTAGATATTAAGGTCATGCTCATGCAAGAGGAGGCAAGGCAAAGGGAAGACTTTAATGTCAAACTTCCCCAGGCCAACTTTGCCTATCATGGTAATTCAAACACTGGTTCTAGTGGCGGCAAAACTCCGAGTAAAAAATGGAAGAATAAGGAAAAGCAACCATTTAAGGTGCAACCCAGTAAAGGGCAAGGAGAAGTTGTTATAGAAATCTTGTTTCTATTTCTAGGTTGGATGTTTTAG

mRNA sequence

ATGGCTCAATCAATAGAAGAACACATTATTCACATGGTGTACACCTACAACTGGTTTAAAAGTATGGATGTGGATCTTGGTGAGGGAGTGTTAGTTGGGTTTTTGTTGAAATCATGTAAGGATGATAATTTCAAGCAATTTTGGAGAACTTACAACCATCTTAAGGAAAAATTTTCTCTTTTAGATATTAAGGTCATGCTCATGCAAGAGGAGGCAAGGCAAAGGGAAGACTTTAATGTCAAACTTCCCCAGGCCAACTTTGCCTATCATGGTAATTCAAACACTGGTTCTAGTGGCGGCAAAACTCCGAGTAAAAAATGGAAGAATAAGGAAAAGCAACCATTTAAGGTGCAACCCAGTAAAGGGCAAGGAGAAGTTGTTATAGAAATCTTGTTTCTATTTCTAGGTTGGATGTTTTAG

Coding sequence (CDS)

ATGGCTCAATCAATAGAAGAACACATTATTCACATGGTGTACACCTACAACTGGTTTAAAAGTATGGATGTGGATCTTGGTGAGGGAGTGTTAGTTGGGTTTTTGTTGAAATCATGTAAGGATGATAATTTCAAGCAATTTTGGAGAACTTACAACCATCTTAAGGAAAAATTTTCTCTTTTAGATATTAAGGTCATGCTCATGCAAGAGGAGGCAAGGCAAAGGGAAGACTTTAATGTCAAACTTCCCCAGGCCAACTTTGCCTATCATGGTAATTCAAACACTGGTTCTAGTGGCGGCAAAACTCCGAGTAAAAAATGGAAGAATAAGGAAAAGCAACCATTTAAGGTGCAACCCAGTAAAGGGCAAGGAGAAGTTGTTATAGAAATCTTGTTTCTATTTCTAGGTTGGATGTTTTAG

Protein sequence

MAQSIEEHIIHMVYTYNWFKSMDVDLGEGVLVGFLLKSCKDDNFKQFWRTYNHLKEKFSLLDIKVMLMQEEARQREDFNVKLPQANFAYHGNSNTGSSGGKTPSKKWKNKEKQPFKVQPSKGQGEVVIEILFLFLGWMF
Homology
BLAST of Bhi07G000077 vs. ExPASy TrEMBL
Match: A0A6A2XC10 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111810pilonHSYRG00082 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 0

Query: 19  FKSMDVDLGEGVLVGFLLKSCKDDNFKQFWRTYNHLKEKFSLLDIKVMLMQEEARQREDF 78
           FK++D+DLGE VLV F+LKSCK D+FKQF RTYN LKEK+SLLD KVML+QEEARQRED 
Sbjct: 65  FKTLDMDLGERVLVEFMLKSCKGDDFKQFRRTYNQLKEKWSLLDTKVMLLQEEARQREDL 124

Query: 79  NVKLPQANFAYHGNSNTGSSGGKTPSKKWKN 110
            VKLPQAN +Y GN N GSSG K PS    N
Sbjct: 125 KVKLPQANISYCGNLNGGSSGNKAPSHYQSN 155

BLAST of Bhi07G000077 vs. ExPASy TrEMBL
Match: A0A6N2LX56 (CCHC-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS280921 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 2   AQSIEEHIIHMVYTYNWFKSMDVDLGEGVLVGFLLKSCKDDNFKQFWRTYNHLKEKFSLL 61
           +Q+I EH+ HM    +   SM +++ E  LV F++ S   + + QF   YN +K+K+++ 
Sbjct: 114 SQTIHEHVTHMSNLASRLTSMGMEVHESFLVQFIINSLPQE-YGQFQVNYNTIKDKWNIQ 173

Query: 62  DIKVMLMQEEARQREDFNVKLPQANFAYHGNSNTGSSGGKTPSKKWKNKEKQPFK 117
           ++K ML+QEEAR ++  N        A     N   S  K PS K K K+K  FK
Sbjct: 174 ELKAMLIQEEARLKKQKN------QVALIVGLNKAGSSFKKPSMKDKRKDKGIFK 221

BLAST of Bhi07G000077 vs. ExPASy TrEMBL
Match: A0A6N2M754 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS285476 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 2   AQSIEEHIIHMVYTYNWFKSMDVDLGEGVLVGFLLKSCKDDNFKQFWRTYNHLKEKFSLL 61
           +Q+I EH+ HM    +   SM +++ E  LV F++ S   + + QF   YN +K+K+++ 
Sbjct: 147 SQTIHEHVTHMSNLASRLTSMGMEVHESFLVQFIINSLPQE-YGQFQVNYNTIKDKWNIQ 206

Query: 62  DIKVMLMQEEARQREDFNVKLPQANFAYHGNSNTGSSGGKTPSKKWKNKEKQPFK 117
           ++K ML+QEEAR ++  N        A     N   S  K PS K K K+K  FK
Sbjct: 207 ELKAMLIQEEARLKKQKN------QVALIVGLNKADSSFKKPSMKDKRKDKGIFK 254

BLAST of Bhi07G000077 vs. ExPASy TrEMBL
Match: A0A6N2MJZ2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS381477 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 0

Query: 2   AQSIEEHIIHMVYTYNWFKSMDVDLGEGVLVGFLLKSCKDDNFKQFWRTYNHLKEKFSLL 61
           +Q+I EH+ HM    +   SM +++ E  LV F++ S   + + QF   YN +K+K+++ 
Sbjct: 147 SQTIHEHVTHMSNLASRLTSMGMEVHESFLVQFIINSLPQE-YGQFQVNYNTIKDKWNIQ 206

Query: 62  DIKVMLMQEEARQREDFNVKLPQANFAYHGNSNTGSSGGKTPSKKWKNKEKQPFK 117
           ++K ML+QEEAR ++  N        A     N   S  K PS K K K+K  FK
Sbjct: 207 ELKAMLIQEEARLKKQKN------QVALIVGLNKAGSSFKKPSMKDKRKDKGIFK 254

BLAST of Bhi07G000077 vs. ExPASy TrEMBL
Match: A0A6N2KLF5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS98901 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 2   AQSIEEHIIHMVYTYNWFKSMDVDLGEGVLVGFLLKSCKDDNFKQFWRTYNHLKEKFSLL 61
           +Q+I EH+ HM    +   SM +++ E  LV F++ S   + + QF   YN +K+K+++ 
Sbjct: 142 SQTIHEHVTHMSNLASRLTSMGMEVHESFLVQFIINSLPQE-YGQFQVNYNTIKDKWNIQ 201

Query: 62  DIKVMLMQEEARQREDFNVKLPQANFAYHGNSNTGSSGGKTPSKKWKNKEKQPFK 117
           ++K ML+QEEAR ++   V L        G +  GSS  K PS K K K+K  FK
Sbjct: 202 ELKAMLIQEEARLKKKNQVAL------IVGLNKAGSS-FKKPSMKDKRKDKGIFK 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A2XC107.5e-2671.43Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111810pilon... [more]
A0A6N2LX561.9e-0534.78CCHC-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS280... [more]
A0A6N2M7541.9e-0534.78Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS285476 PE=4 SV=... [more]
A0A6N2MJZ21.9e-0534.78Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS381477 PE=4 SV=... [more]
A0A6N2KLF51.9e-0536.52Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS98901 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi07M000077Bhi07M000077mRNA