Bhi06G001600 (gene) Wax gourd (B227) v1

Overview
NameBhi06G001600
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr6: 52582414 .. 52582689 (+)
RNA-Seq ExpressionBhi06G001600
SyntenyBhi06G001600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGATGATTTCAAGAGGAAATACCGAGTCGCTGAGCTTTGGAGGCCGGGTCTTTGTTGCGATTGAGGTTATGGAGGAGAGAGGAATTGGTGGAGGTTGTGTCAGTGGAGGCGGTGGCGGAGGCGAGGGCGGCGCGTTTTCGGAGTTGTTCGAGTTCTTCCTTATCCTCGATTTTGACATCGATCTTGGTGGGTTGTCTTCTCAGCATTTTGCCGGTTCCGCTGGCGCCGGAGAAATCTGGGGAACTTCTAGCAAAATGCCCCAACAATAA

mRNA sequence

ATGGAATGGATGATTTCAAGAGGAAATACCGAGTCGCTGAGCTTTGGAGGCCGGGTCTTTGTTGCGATTGAGGTTATGGAGGAGAGAGGAATTGGTGGAGGTTGTGTCAGTGGAGGCGGTGGCGGAGGCGAGGGCGGCGCGTTTTCGGAGTTGTTCGAGTTCTTCCTTATCCTCGATTTTGACATCGATCTTGGTGGGTTGTCTTCTCAGCATTTTGCCGGTTCCGCTGGCGCCGGAGAAATCTGGGGAACTTCTAGCAAAATGCCCCAACAATAA

Coding sequence (CDS)

ATGGAATGGATGATTTCAAGAGGAAATACCGAGTCGCTGAGCTTTGGAGGCCGGGTCTTTGTTGCGATTGAGGTTATGGAGGAGAGAGGAATTGGTGGAGGTTGTGTCAGTGGAGGCGGTGGCGGAGGCGAGGGCGGCGCGTTTTCGGAGTTGTTCGAGTTCTTCCTTATCCTCGATTTTGACATCGATCTTGGTGGGTTGTCTTCTCAGCATTTTGCCGGTTCCGCTGGCGCCGGAGAAATCTGGGGAACTTCTAGCAAAATGCCCCAACAATAA

Protein sequence

MEWMISRGNTESLSFGGRVFVAIEVMEERGIGGGCVSGGGGGGEGGAFSELFEFFLILDFDIDLGGLSSQHFAGSAGAGEIWGTSSKMPQQ
Homology
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BLAST of Bhi06G001600 vs. ExPASy TrEMBL
Match: A0A6A4M552 (Retrotran_gag_3 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_05434 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 1   MEWMISRGNTESLSFGGRVF-VAIEVMEER-GIGGGCVSGGGGGGEGGAFSELFEFFLIL 60
           ++ ++  G  +++ FG  VF  AIEV+EER G GGG    GG GG GGAF+  FEFF + 
Sbjct: 201 LKGLLRGGEADAVGFGRGVFGGAIEVVEERXGAGGGGGCAGGCGGGGGAFAGFFEFFFVF 260

Query: 61  DFDIDLGGLSSQHFA 74
           DFD+D  G SSQH +
Sbjct: 261 DFDLDFAGFSSQHLS 275

The following BLAST results are available for this feature:
BLAST of Bhi06G001600 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G001600 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G001600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A4M5523.5e-0849.33Retrotran_gag_3 domain-containing protein (Fragment) OS=Rhododendron williamsian... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001600Bhi06M001600mRNA