Bhi06G001563 (gene) Wax gourd (B227) v1

Overview
NameBhi06G001563
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Descriptiontranscription factor bHLH69-like
Locationchr6: 51288050 .. 51288292 (-)
RNA-Seq ExpressionBhi06G001563
SyntenyBhi06G001563
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGTCGTGACCACCAGCCGGAGACTGACGCCTCTCAACTCCACCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCAACCATCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCAAAATCCTCACTCCGACCTCCCTCCCCAACCACCGACGCCGTCTAA

mRNA sequence

ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGTCGTGACCACCAGCCGGAGACTGACGCCTCTCAACTCCACCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCAACCATCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCAAAATCCTCACTCCGACCTCCCTCCCCAACCACCGACGCCGTCTAA

Coding sequence (CDS)

ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGTCGTGACCACCAGCCGGAGACTGACGCCTCTCAACTCCACCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCAACCATCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCAAAATCCTCACTCCGACCTCCCTCCCCAACCACCGACGCCGTCTAA

Protein sequence

MRLTNSLPDLHSHRRDHQPETDASQLHHHHQLQTSLFHPSSFSSDDFLDQILSNHPSSLGTPRRPPKSSLRPPSPTTDAV
Homology
[Close]
BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A0A0LFE4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009480 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.1e-17
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0 

Query: 1  MRLTNSLPDLHSHRRDHQPETDASQL-HHHHQLQTSLFHPSSFSSDDFLDQILSNHPSSL 60
          MRLTNSLPDLH+HRR+   ETDASQL HHHHQLQTSLFHPS+FSSDDFLDQILS  PS  
Sbjct: 1  MRLTNSLPDLHTHRRNPPQETDASQLHHHHHQLQTSLFHPSTFSSDDFLDQILSTVPSPW 60

Query: 61 GTPRRPPKSSLRPPSP 76
            P   P   L P +P
Sbjct: 61 ELPPGLPSQPLPPSNP 76

[Close]
BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A6J1G4B7 (transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111450664 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 54/79 (68.35%), Postives = 58/79 (73.42%), Query Frame = 0 

Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHHHQLQTSLFHPSSFSSDDFLDQILSNHPS--- 60
          MRLTNSLPDLHSHRR+H PETD SQLHHH  LQTS+FHP SFSSDDFLDQILS  P    
Sbjct: 1  MRLTNSLPDLHSHRRNHPPETDDSQLHHH--LQTSVFHPPSFSSDDFLDQILSTAPPPWE 60

Query: 61 -SLGTPRRPPKSSLRPPSP 76
            +G P   P S+L P  P
Sbjct: 61 LPVGLPN--PHSNLPPQPP 75

[Close]
BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A6J1KH22 (transcription factor bHLH69-like OS=Cucurbita maxima OX=3661 GN=LOC111493801 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.6e-15
Identity = 54/79 (68.35%), Postives = 57/79 (72.15%), Query Frame = 0 

Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHHHQLQTSLFHPSSFSSDDFLDQILSNHPS--- 60
          MRLTNSLPDLHSHRR+  PETD SQLHHH  LQTSLFHP SFSSDDFLDQILS  P    
Sbjct: 1  MRLTNSLPDLHSHRRNQPPETDDSQLHHH--LQTSLFHPPSFSSDDFLDQILSTAPPPWE 60

Query: 61 -SLGTPRRPPKSSLRPPSP 76
            +G P   P S+L P  P
Sbjct: 61 LPVGLPN--PHSNLPPQPP 75

[Close]
BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A6J1FBH4 (transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111444106 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHH-HQLQTSLFHPSSFSSDDFLDQILSNHPS-- 60
          MRLTNSLPDLHS+RR+  PETDASQLHHH + LQ S  HPSSFSSDDFLDQILS+ P   
Sbjct: 1  MRLTNSLPDLHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPW 60

Query: 61 SLGTPRRPPKSSLRPPSP 76
           L T    P S+L P  P
Sbjct: 61 ELPTGLPNPHSNLPPQPP 78

[Close]
BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A5A7V5Q2 (Transcription factor bHLH66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00700 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0 

Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHHHQ---LQTSLFHP-SSFSSDDFLDQILSNHP 60
          MRLTNSLPDLH+HRR+  P+T ASQLHHHH    LQTSLFHP SSFSSDDFL+QILS  P
Sbjct: 1  MRLTNSLPDLHTHRRNPPPDTGASQLHHHHHHHPLQTSLFHPNSSFSSDDFLEQILSTLP 60

Query: 61 SSLGTPRRPPKSSLRPPSPT 77
               P   P   L PPS T
Sbjct: 61 PPWELPPGLPPQPL-PPSNT 79

The following BLAST results are available for this feature:
BLAST of Bhi06G001563 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G001563 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFE48.1e-1771.05BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009480 PE=4 S... [more]
A0A6J1G4B72.0e-1568.35transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111450664 P... [more]
A0A6J1KH227.6e-1568.35transcription factor bHLH69-like OS=Cucurbita maxima OX=3661 GN=LOC111493801 PE=... [more]
A0A6J1FBH43.2e-1366.67transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111444106 P... [more]
A0A5A7V5Q24.2e-1366.25Transcription factor bHLH66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001563Bhi06M001563mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding