Bhi06G001563 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001563
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	transcription factor bHLH69-like
Location	chr6: 51288050 .. 51288292 (-)
RNA-Seq Expression	Bhi06G001563
Synteny	Bhi06G001563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGTCGTGACCACCAGCCGGAGACTGACGCCTCTCAACTCCACCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCAACCATCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCAAAATCCTCACTCCGACCTCCCTCCCCAACCACCGACGCCGTCTAA

mRNA sequence

ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGTCGTGACCACCAGCCGGAGACTGACGCCTCTCAACTCCACCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCAACCATCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCAAAATCCTCACTCCGACCTCCCTCCCCAACCACCGACGCCGTCTAA

Coding sequence (CDS)

ATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGTCGTGACCACCAGCCGGAGACTGACGCCTCTCAACTCCACCACCACCACCAACTTCAAACCTCCCTCTTCCATCCCTCTTCCTTCTCCTCCGACGATTTCCTCGACCAAATCCTCTCCAACCATCCCTCCTCCCTGGGAACTCCCCGCCGGCCTCCAAAATCCTCACTCCGACCTCCCTCCCCAACCACCGACGCCGTCTAA

Protein sequence

MRLTNSLPDLHSHRRDHQPETDASQLHHHHQLQTSLFHPSSFSSDDFLDQILSNHPSSLGTPRRPPKSSLRPPSPTTDAV

Homology

[Close]

BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A0A0LFE4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009480 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.1e-17
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 1  MRLTNSLPDLHSHRRDHQPETDASQL-HHHHQLQTSLFHPSSFSSDDFLDQILSNHPSSL 60
          MRLTNSLPDLH+HRR+   ETDASQL HHHHQLQTSLFHPS+FSSDDFLDQILS  PS  
Sbjct: 1  MRLTNSLPDLHTHRRNPPQETDASQLHHHHHQLQTSLFHPSTFSSDDFLDQILSTVPSPW 60

Query: 61 GTPRRPPKSSLRPPSP 76
            P   P   L P +P
Sbjct: 61 ELPPGLPSQPLPPSNP 76

[Close]

BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A6J1G4B7 (transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111450664 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 54/79 (68.35%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHHHQLQTSLFHPSSFSSDDFLDQILSNHPS--- 60
          MRLTNSLPDLHSHRR+H PETD SQLHHH  LQTS+FHP SFSSDDFLDQILS  P    
Sbjct: 1  MRLTNSLPDLHSHRRNHPPETDDSQLHHH--LQTSVFHPPSFSSDDFLDQILSTAPPPWE 60

Query: 61 -SLGTPRRPPKSSLRPPSP 76
            +G P   P S+L P  P
Sbjct: 61 LPVGLPN--PHSNLPPQPP 75

[Close]

BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A6J1KH22 (transcription factor bHLH69-like OS=Cucurbita maxima OX=3661 GN=LOC111493801 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.6e-15
Identity = 54/79 (68.35%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHHHQLQTSLFHPSSFSSDDFLDQILSNHPS--- 60
          MRLTNSLPDLHSHRR+  PETD SQLHHH  LQTSLFHP SFSSDDFLDQILS  P    
Sbjct: 1  MRLTNSLPDLHSHRRNQPPETDDSQLHHH--LQTSLFHPPSFSSDDFLDQILSTAPPPWE 60

Query: 61 -SLGTPRRPPKSSLRPPSP 76
            +G P   P S+L P  P
Sbjct: 61 LPVGLPN--PHSNLPPQPP 75

[Close]

BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A6J1FBH4 (transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111444106 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-13
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHH-HQLQTSLFHPSSFSSDDFLDQILSNHPS-- 60
          MRLTNSLPDLHS+RR+  PETDASQLHHH + LQ S  HPSSFSSDDFLDQILS+ P   
Sbjct: 1  MRLTNSLPDLHSNRRNRPPETDASQLHHHQNHLQASHLHPSSFSSDDFLDQILSSIPLPW 60

Query: 61 SLGTPRRPPKSSLRPPSP 76
           L T    P S+L P  P
Sbjct: 61 ELPTGLPNPHSNLPPQPP 78

[Close]

BLAST of Bhi06G001563 vs. ExPASy TrEMBL
Match: A0A5A7V5Q2 (Transcription factor bHLH66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00700 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-13
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 1  MRLTNSLPDLHSHRRDHQPETDASQLHHHHQ---LQTSLFHP-SSFSSDDFLDQILSNHP 60
          MRLTNSLPDLH+HRR+  P+T ASQLHHHH    LQTSLFHP SSFSSDDFL+QILS  P
Sbjct: 1  MRLTNSLPDLHTHRRNPPPDTGASQLHHHHHHHPLQTSLFHPNSSFSSDDFLEQILSTLP 60

Query: 61 SSLGTPRRPPKSSLRPPSPT 77
               P   P   L PPS T
Sbjct: 61 PPWELPPGLPPQPL-PPSNT 79

The following BLAST results are available for this feature:

BLAST of Bhi06G001563 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G001563 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G001563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFE4	8.1e-17	71.05	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009480 PE=4 S...	[more]
A0A6J1G4B7	2.0e-15	68.35	transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111450664 P...	[more]
A0A6J1KH22	7.6e-15	68.35	transcription factor bHLH69-like OS=Cucurbita maxima OX=3661 GN=LOC111493801 PE=...	[more]
A0A6J1FBH4	3.2e-13	66.67	transcription factor bHLH69-like OS=Cucurbita moschata OX=3662 GN=LOC111444106 P...	[more]
A0A5A7V5Q2	4.2e-13	66.25	Transcription factor bHLH66-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001563	Bhi06M001563	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding