Bhi06G001557 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001557
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem II protein D1
Location	chr6: 51140343 .. 51140612 (+)
RNA-Seq Expression	Bhi06G001557
Synteny	Bhi06G001557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACAGAAACAATATTATTTCTGGTGCTATTATCCCTGCTTCTGCAGCTATTGGTTTGCACTTTTACCCAATTTGGGAAGTTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATGGTTCTACACTTCTTACTTGATGTAGCATGTTAA

mRNA sequence

ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACAGAAACAATATTATTTCTGGTGCTATTATCCCTGCTTCTGCAGCTATTGGTTTGCACTTTTACCCAATTTGGGAAGTTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATGGTTCTACACTTCTTACTTGATGTAGCATGTTAA

Coding sequence (CDS)

ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACAGAAACAATATTATTTCTGGTGCTATTATCCCTGCTTCTGCAGCTATTGGTTTGCACTTTTACCCAATTTGGGAAGTTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATGGTTCTACACTTCTTACTTGATGTAGCATGTTAA

Protein sequence

MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPIWEVASVDEWLYNGGPYELMVLHFLLDVAC

Homology

[Close]

BLAST of Bhi06G001557 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 170.6 bits (431), Expect = 5.6e-43
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy Swiss-Prot
Match: Q3V554 (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.8e-42
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.8e-42
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.8e-42
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.8e-42
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy Swiss-Prot
Match: P02956 (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 7.8e-42
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy TrEMBL
Match: A0A0A0UU45 (Photosystem II protein D1 OS=Corallorhiza maculata var. mexicana OX=512271 GN=psbA PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIPASAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPASAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL +AC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGIAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy TrEMBL
Match: Q6W638 (Photosystem II protein D1 OS=Sphagnum wulfianum OX=128256 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy TrEMBL
Match: A0A2L0VCP4 (Photosystem II protein D1 OS=Fraxinus chiisanensis OX=490838 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy TrEMBL
Match: A0A346QAX9 (Photosystem II protein D1 OS=Holboellia latifolia OX=41782 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

[Close]

BLAST of Bhi06G001557 vs. ExPASy TrEMBL
Match: A0A0U2SYW5 (Photosystem II protein D1 OS=Oenothera oakesiana OX=482602 GN=psbA PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1   MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYRNNIISGAIIPASAAIGLHFYPI 60
           MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLY NNIISGAIIP SAAIGLHFYPI
Sbjct: 37  MIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPI 96

Query: 61  WEVASVDEWLYNGGPYELMVLHFLLDVAC 90
           WE ASVDEWLYNGGPYEL+VLHFLL VAC
Sbjct: 97  WEAASVDEWLYNGGPYELIVLHFLLGVAC 125

The following BLAST results are available for this feature:

BLAST of Bhi06G001557 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	5.6e-43	94.38	photosystem II reaction center protein A	[more]

BLAST of Bhi06G001557 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V554	7.8e-42	94.38	Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1	[more]
A4QJ96	7.8e-42	94.38	Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1	[more]
A4QJI0	7.8e-42	94.38	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
A1E9Y8	7.8e-42	94.38	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]
P02956	7.8e-42	94.38	Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1	[more]

BLAST of Bhi06G001557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0UU45	1.3e-39	94.38	Photosystem II protein D1 OS=Corallorhiza maculata var. mexicana OX=512271 GN=ps...	[more]
Q6W638	2.9e-39	94.38	Photosystem II protein D1 OS=Sphagnum wulfianum OX=128256 GN=psbA PE=3 SV=1	[more]
A0A2L0VCP4	2.9e-39	94.38	Photosystem II protein D1 OS=Fraxinus chiisanensis OX=490838 GN=psbA PE=3 SV=1	[more]
A0A346QAX9	2.9e-39	94.38	Photosystem II protein D1 OS=Holboellia latifolia OX=41782 GN=psbA PE=3 SV=1	[more]
A0A0U2SYW5	2.9e-39	94.38	Photosystem II protein D1 OS=Oenothera oakesiana OX=482602 GN=psbA PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 1..89 e-value: 4.9E-10 score: 41.3
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..89
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..89 e-value: 5.0E-16 score: 58.7
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 7..89
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 7..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001557	Bhi06M001557	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity