Bhi06G001544 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001544
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	CCHC-type domain-containing protein
Location	chr6: 50693131 .. 50698150 (-)
RNA-Seq Expression	Bhi06G001544
Synteny	Bhi06G001544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCCACTTCCAATTCTTCTAGACCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCCACTTCCAATTCTTCTAGACCTCCTTTCTCCTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCTGAGGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGCGTTTTCAAGTATCGCGGCCGTGGACACGAGGTTATCTTCTATTTTCCTTCCGATTATCGTGTGAATAGTCGATTTGTTCTGATCAGGCACATGCAAGTTTTATTTGAGATATATTTTCAACATTGCTGCTCAAGGACAAAGAGGGTTTTCGAAAACAAAATACTAATTACTAGAGTCTGACGCGTTTTAGGATTTAGGTTTTTGATATGAAATCGATAATCAAATTAAAACGAAAACAGTAGAGTAACTAACATAGAGATTTAGATGGTTCACTAACTTGTTGGCAACGTCCATGAATGGAGGGAGCGATAAATGTCAGATTACAGACCCCCACCAGCCCGTGTTGCCTCTGGTCCCTGACTCATTGACCGGTCAGTGTTGAGAATCCCATATTGAAAAAATTAAGGGACCTCATACTCCTTATAAGTTAAGTTTGCTAGATTCAAGGCATTCCAACGTATTTTGTGTTGAATGATTAGAAACAATTTTGAATGTGATGCATATTTCATTTGAAGATTTGTTCGAGAGAGCTTAGGCTTCATCGGGGGAATAGGTATTTACCTTAATGGTTTGTTTATTGGAAAACCAGATTTAAACCTTTTTCCATTGAATGGTAGCTATGAGTGTTTCATCAACACTATGTATATGTATATTTTCTTTTTCTTATTACCGTGCCATCCTCTCATCTATTCTCATTTTCTAATGATTTGATTATTGTACTGATTGAGTTATGCTTTGATTGCTGTTTTGTAGATCAGTGATTTGGGAAACCTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAGGTAGCTGCTACAAAACGTGTAAAGGTAAAAATGTGCATGAACCCTGAATTTATTTGTTCTTTACGATGAAGGTATCAAAGAGATGTACATATATGGCTAGCTGGATTGGTATGTGTGTCAAAGTACAGGAACTTAGCCTAATAACGTACTAATATAGATAGCATTTGAACTAAAGGAACTGCGCTTAATTAACCCAGTGCATCTGAAGGGAGTAGAGACAGAGTGCATCATTTTTTGTTGGCACAGAATGCGCTCAAACTCTGTAATATTTTAAGTGAATCCTTATTTATTGAATCAAATCAACATGGAGCAAATTATTAAATGATATCTAATTTACAATGAATTTGCATTCTTTCTAAAAAGACATATTTTGAGCAGATGTGCCTTGGAGAACTAAGGGAGAGGGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGCGAAGCACCCATTTTAAACGATGATGATGTCAATAATGAAAAAGGTACCTTCTAGTATTATCATTTATTAAAAGATTGTAAGGCCCCTAGCTATAGAAATAATAGGAGTATTAGTAGAATATTAGTATGGTATTAGTAAGGGATATAGGGGTAATTAAATGGGAAGTTAGTTACTGAATATTTCTATAAATAGGAGAGGAAGTATTGGGAGGGTGTGAAGAACTTTATGTGAGGATTTCCTAATTGAGAATTTGGGAGAGACTAGCCCTCTCGAAAGGTTAGGGTTTATCTTGTTATTTTGTTTGTGAGTTTATAGCATATTTCAATACATTTTCCTATATTTCTGTAATTGAATGGTCCTTTAGTTTTTCTATATTTTTTAGTACTGATCTTGTTAGGAGGGTTCCTAACAAAGACACTCGTATTATTGTTTTGATCAGCTGTTTTGTCATGATAGAATGTATGCCATTAAATTGTGTTAGTGTTTGGTGTGTTGTGCATTGTCCTCTAACTGTATTTAGAACATTTAAATTTTGTTTAGACGATAAATTTGAAGTTACCGAATTACCAAAACAAGTAAGCAAGAAACAATTGTAAAAATGAAAGAAAGGTTGAAATTGAACACGATGATTAGTTTTTAGCGTTCCATTTTGATCTCTAAAAGTTTTTGTAGTGTCTCTAAAAGTAGCCATGTCTATAGCTATGAGAATTATAGGTTTTAAGAAGATTAATATCTATAAACATTGAACAACACATTGTCCTAATTCTTGTCAGGGCACTCAAGTACGTGTACCTGATGTAAATATGGACATAGTATATGATGTAGGATTTTAGGTGGACATTGCTTGAGTTAACGATGCCCATAAAGAGCCTACATTACATACAGATTTACAAAACTTCTAGAGATTGGTAAATGCAGCGTGATAATAGGATATGGGACACTGATTTCATTCAGGACAAGTAGCTTATGTTGACAAAAGGAGCCCAATTTTTCAGTATATGAGTGTGATTGTGTATGCTTATGTGCGTTTTCTGTATCTATTGAAATGCTTGGATTATTTGACTATAAACATTGAACAACACGAATAAAAGTTATACTTGGATTATTGTTATTTTTTATGTTCCACTCCTATCAAGACAGGGTTTCGTGAAAGCTTCCAAATACTGCTCATTCAAATTGTCGTCTTCAGATTTGCGTTGGAAGATCCTTCAATATTGGTTCCTCTTTTTGTGGGCTTCTCAAAGAAAGTTCATTATTTTATTTAAAAACGTTGAGGATACCACATTAAAAAGTGAAGAAACTTACCCTCTTTATAAGATATACAAAGTTATTCATCTCGTTGCCAATTGGTTTTGAGATGAAACATAATGTTTCTCTAATATGGTATTATTATAGCTCATAAATCCCAAGTTTGGACAAAAAAAAGGGGGGGATTTCATACAAGAATAGGGAATCCGAAGAGGCATCATTTTAAGAGGACATGTTGAGGACCCCACATTAGAAAAGTCGATAGACCTCAAAATCTTTATAAGATACATGGGTTACCCTCTCATCGATCAATTTGTTATGAGATGGAACCCCATGTGAAAAAAACTTCTCATCTTTCTCTCTTATACATATTTGTATGTTGTTGATCAAGGCTATGAGATTTGAGAGCTGTGTCTATGTTGGGAATGTGATCAAAATCTCACATTGGCTAGATAAGCGTGAGTATATAATTGAAGGACAATATCTCTATTGGTATGAAGCAGCCTTTTGGGTGATTTCAAAAGCATGTCTTGAGAGCTTATGCCTAAAATGGACAATATCATACTATTATGGAGATATTGGAGAGTCATTATTCCAAACAATATACACCTTTGTCAATTGGAGCTTAGTTCTAAATGTTTTCTCACGACCTTACTTGAACAGGATCTGTTCTATAGGTTGTACAACTATGTCCTTGAGTTCTAAGTTCTAAATGTTTCCTCTTCTCATTGGCCTCTGGATGCCCAGTTTGGTATGCACTAAGCAGTTGGTGCTTGGAATGGGAAAATTGTATCACAATGTAGGTAGTAAATATGTTGCCTTTTTCATTTTCTTTATACCTTGTGCCATGGTATGTATCTTGGCTCTATGTAGTTAGATATGCAACCTAGGAAGTTAAATCCATCCATTTGAGTATTTTCTCTCATGTGTGGAACTATACTACGATGTGATTGGAAAAAAAAAATTTAGATTCTAAAACTAATCATTATTTGAGCACCCCTTTTCATGAACTTCAAGTCCGTTTGCCAATGCTTGCAGAAGCCAAAGACCCGGAGGGCATATTTGATAATCAGGAAGAGGCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGTAAGTCTTTCTTGGTTCATTTTTTAACACTTGGTTGCTTTCCATCCCCTATAATTCTTTTAGTTTTAATCGTACCATTGCTTAATGTGAAAACTCTCGCAGTTAATTGAATGGGGAATTTTACCGTGAGTCTTAAATTAGATTTCAGGAATAGTCATATTGAAGCAAACTTTTCAGTCTTTATTGGCAGATCAATTTTCCAGATGAAGTTGTCAGGTCGATTATTAAAAATCTATATGTTGCCCCAATTAACTATAATTTACACTTGAACTCAATTTTCTAAACCAATTTAGATAATTAATCTATTTTCACTCTGTTGCACTTAAAATCAACTCAAAATCACATACATATAATTATTCTTCTTCCACCCCATAGAAGTAGCCAAAAAAAAAAAAAAAAAAAAGAAAGAAAACTGTCACGTGATTCTGAACAAGTAGAGGGAAATAGAGCAATGCAAGAAGATGAAAAGTCACTCAGAATTATTGAAAAAGCACTACCATCTATTTCATTACTCAAGTGTGAATGTTATGTATTAAACGGTTTTTACTTAACTATGGTAGTCTTAAAACGGTTTTTACCTAACTATGGTAAAAAGTAAGCTCTTAGGTTGAAACCCTTATCTGCATACTAATGTCTATAGTTGATGAGAAACTTGAAGCAAGTATACCTCCATCCGTATTCTTTCTAACTTGAGTTTGATCACACCTAACACCATTTCATGGCATATTAACGATCTACAACATTTGGTTACGGGTGTTTACATGTTTGTAGGAACCATCGCAGAATGTACAAAGTGATTCCTTCACCATTGGTGAAACTATAGAAGGTGTGGCCAACCAAGAACCAAAGATTAGTAATTCAAGTGAAACTCAACTCACCGAGGAACAGAGAGGTCGAATGGAAGCCAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGGCTCGCTCTTTGCCCACTGTCTGA

mRNA sequence

ATGGAGAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAACCTCCTTTCTCCTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCTGAGGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGCGTTTTCAAGTATCGCGGCCGTGGACACGAGATCAGTGATTTGGGAAACCTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAGGTAGCTGCTACAAAACGTGTAAAGATGTGCCTTGGAGAACTAAGGGAGAGGGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGCGAAGCACCCATTTTAAACGATGATGATGTCAATAATGAAAAAGAAGCCAAAGACCCGGAGGGCATATTTGATAATCAGGAAGAGGCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAACCATCGCAGAATGTACAAAGTGATTCCTTCACCATTGGTGAAACTATAGAAGGTGTGGCCAACCAAGAACCAAAGATTAGTAATTCAAGTGAAACTCAACTCACCGAGGAACAGAGAGGTCGAATGGAAGCCAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGGCTCGCTCTTTGCCCACTGTCTGA

Coding sequence (CDS)

ATGGAGAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAACCTCCTTTCTCCTCTGCTCCTGCTGCCCCTTCAAAAGTTGCAGAGAAGCCCAAGAAAGCCCCCAGAACCAGGCCCAAGCTCACTCCTGAGCTACTCCTTTCTGAGGATGGTCTAGGTTACGTCCTTCGCCATTTTCCTCGCGTTTTCAAGTATCGCGGCCGTGGACACGAGATCAGTGATTTGGGAAACCTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACTCTTTCGAGCATTTTGTACATAAGGTGGAACAGGTAGCTGCTACAAAACGTGTAAAGATGTGCCTTGGAGAACTAAGGGAGAGGGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGCGAAGCACCCATTTTAAACGATGATGATGTCAATAATGAAAAAGAAGCCAAAGACCCGGAGGGCATATTTGATAATCAGGAAGAGGCTTTGAGGAATAATGGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGAACCATCGCAGAATGTACAAAGTGATTCCTTCACCATTGGTGAAACTATAGAAGGTGTGGCCAACCAAGAACCAAAGATTAGTAATTCAAGTGAAACTCAACTCACCGAGGAACAGAGAGGTCGAATGGAAGCCAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGGCTCGCTCTTTGCCCACTGTCTGA

Protein sequence

MEKDNAAVAAPTGCYKPPFSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDVNNEKEAKDPEGIFDNQEEALRNNGADDIEEDMLQEVYEKATEEPSQNVQSDSFTIGETIEGVANQEPKISNSSETQLTEEQRGRMEANRLKALERAAAKARSLPTV

Homology

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BLAST of Bhi06G001544 vs. TAIR 10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 191.8 bits (486), Expect = 6.6e-49
Identity = 131/277 (47.29%), Postives = 166/277 (59.93%), Query Frame = 0


Query: 9   AAPTGCYK---PPF------SSAP----------AAPSKV------------------AE 68
           +APTGC+K   P        SSAP          +APS++                  A 
Sbjct: 3   SAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAPAP 62

Query: 69  KPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHI 128
           K  K    RPKLTPELLLSEDGLGYVLR+FP+ FKYRGRG E+SDLGNLI LY EWH+H+
Sbjct: 63  KVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEVSDLGNLIRLYSEWHTHL 122

Query: 129 LPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKW---REAPILNDDDVNNEK 188
           LPYYSF+HFVHKV+QVA+TKRVK C+ ELRERVA G DP K    +E   +  DD + ++
Sbjct: 123 LPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQ 182

Query: 189 EAKDPEGIFDNQEEALRNNGADDIEEDMLQEVYEKATEEPS--QNVQSDSFTIGETIEGV 244
            + D E I     +A  +  AD  E+ ML E+++ A++ PS  QN+   S    E    +
Sbjct: 183 PSHDEENIPSKSVDA--DTNADAFEDSMLNEIFDNASKLPSDEQNMDKSSELTEEQRARM 242

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BLAST of Bhi06G001544 vs. ExPASy Swiss-Prot
Match: Q5F416 (TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 63/210 (30.00%), Postives = 88/210 (41.90%), Query Frame = 0


Query: 34  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILP 93
           K   R+ PKL    L+SE GL   LRH     K++G+GHE  DL  L+     W   + P
Sbjct: 65  KAVKRSIPKLDANRLVSERGLP-ALRHMFDNVKFKGKGHEAEDLKTLLRHMEHWAHRLFP 124

Query: 94  YYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDVNNEKEAKDP 153
              F+ F+ +VE +   K V+ CL  +R             + PIL++D   NE    + 
Sbjct: 125 KLQFDDFIDRVESLGNKKEVQTCLKRIR------------LDLPILHEDFTANEGGGGES 184

Query: 154 EGIFDNQEEALRNNGADDIEEDMLQEVYEKATEEPSQNVQSDSFTIGETIEGVANQEPKI 213
            G+                         + ATEE    V S S  +GE           +
Sbjct: 185 NGL-------------------------DMATEE----VHSFSGNVGE-----------L 221

Query: 214 SNSSETQLTEEQRGRMEANRLKALERAAAK 244
            +   T LTEEQ+ R++ NR  ALER  AK
Sbjct: 245 DSLPGTTLTEEQQQRIKRNRQLALERRQAK 221

[Close]

BLAST of Bhi06G001544 vs. ExPASy Swiss-Prot
Match: Q9BVW5 (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 8.4e-09
Identity = 55/184 (29.89%), Postives = 81/184 (44.02%), Query Frame = 0


Query: 16  KPPFSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEIS 75
           +P   S   AP +V  K +   R  PKL  + L+SE GL   LRH     K++G+GHE  
Sbjct: 41  EPDEESGNGAPVRVPPK-RTVKRNIPKLDAQRLISERGLP-ALRHVFDKAKFKGKGHEAE 100

Query: 76  DLGNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWRE 135
           DL  LI     W   + P   FE F+ +VE + + K V+ CL  +R             +
Sbjct: 101 DLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIR------------LD 160

Query: 136 APILNDDDVNNEKEAKDPEGIFDNQEEALRNNGADDI------EEDMLQEVYEKATEEPS 194
            PIL++D V+N  E      + +N E  + +   D         E    E+    TEE  
Sbjct: 161 LPILHEDFVSNNDE------VAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTEEQQ 204

[Close]

BLAST of Bhi06G001544 vs. ExPASy Swiss-Prot
Match: Q3ZCC4 (TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-08
Identity = 64/231 (27.71%), Postives = 97/231 (41.99%), Query Frame = 0


Query: 16  KPPFSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEIS 75
           +P   S   AP  V  K +   R  PKL  E L+SE GL   LRH     K++G+GHE  
Sbjct: 41  EPEEESGRGAPVPVPPK-RTVKRNIPKLNAERLISERGLP-ALRHVFEKAKFKGKGHEAE 100

Query: 76  DLGNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWRE 135
           DL  LI     W   + P   FE F+ +VE +   K V+ CL  +R             +
Sbjct: 101 DLKTLIRHMEHWAHRLFPKLQFEDFIDRVECLGNKKEVQTCLKRIR------------LD 160

Query: 136 APILNDDDVNNEKEAKDPEG--IFDNQEEALRNNGADDIEEDMLQEVYEKATEEPSQNVQ 195
            PIL++D V+N  E ++  G  +   + +    N    +E     E     TEE  Q ++
Sbjct: 161 LPILHEDFVSNNDEVEENNGHDVTATELDHFLTNSYGSVE--FASESSRSLTEEEQQRIE 220

Query: 196 ---------------SDSFTIGE--TIEGVANQEPKISNSSETQLTEEQRG 228
                          S+S ++G   ++   + Q  +  ++ E Q  EE  G
Sbjct: 221 RNKQLALERRQAKLLSNSQSLGNDLSVNTPSTQTSEAGSTGEEQKEEESNG 255

[Close]

BLAST of Bhi06G001544 vs. ExPASy Swiss-Prot
Match: Q91WA1 (TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 9.3e-08
Identity = 70/239 (29.29%), Postives = 94/239 (39.33%), Query Frame = 0


Query: 11  PTGCYKPPFSSAP--AAPSKVAEKPKK-APRTRPKLTPELLLSEDGLGYVLRHFPRVFKY 70
           P    + P  + P   + S V   PK+   R  PKL    L SE GL   LRH     K+
Sbjct: 29  PASPERDPADAEPEEGSGSGVPVPPKRTVKRNLPKLDATRLTSERGLP-ALRHVFDKTKF 88

Query: 71  RGRGHEISDLGNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARG 130
           +G+GHE  DL  LI     W   + P   FE F+ +VE +   K V+ CL  +R      
Sbjct: 89  KGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIR------ 148

Query: 131 GDPTKWREAPILNDDDVNNEKEAKDPEGIFDNQEEALRNNGADDIEEDMLQEVYEKATEE 190
                  + PI+++D VNN  E  +              NG D                +
Sbjct: 149 ------LDLPIVHEDFVNNNDEVGEA-------------NGPD----------VSATGFD 208

Query: 191 PSQNVQSDSFTIGETIEGVANQEPKISNSSETQLTEEQRGRMEANRLKALERAAAKARS 247
           P     SDS               K ++     LTEEQ+ R+E N+  ALER  AK  S
Sbjct: 209 PFLTSSSDS--------------RKFASEPTRSLTEEQQQRIERNKQLALERRQAKLLS 217

[Close]

BLAST of Bhi06G001544 vs. ExPASy Swiss-Prot
Match: Q4QR88 (TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-06
Identity = 61/243 (25.10%), Postives = 101/243 (41.56%), Query Frame = 0


Query: 2   EKDNAAVAAPTGCYKPPFSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHF 61
           E+D A      G   P     P  P ++ +      R  PKL    L SE GL   LRH 
Sbjct: 33  ERDPAEAEPDEGSGAP----VPVPPKRIVK------RNIPKLDATRLTSERGLP-ALRHV 92

Query: 62  PRVFKYRGRGHEISDLGNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELR 121
               K++G+GHE  DL  LI     W   + P   FE F+ +VE +   K V+ CL  +R
Sbjct: 93  FDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIR 152

Query: 122 ERVARGGDPTKWREAPILNDDDVNNEKEAKDPEGI------FD------NQEEALRNNGA 181
                        + PI+++D VNN  E ++   +      FD      +  +   +  +
Sbjct: 153 ------------LDLPIVHEDFVNNNDEVEETNSLDAAATGFDAFVTSSSDSKRFASEAS 212

Query: 182 DDIEEDMLQEVYEKATEEPSQNVQSDSFTIGETIEGVANQEPKISNSSETQLTEEQRGRM 233
            ++ E+  Q + EK  +   +  Q+   +  +++E     +  +  SS  +  EE  G +
Sbjct: 213 RNLTEEQQQRI-EKNKQLALERRQAKLLSNSQSLE----NDVTVEESSTGENQEESNGLI 247

[Close]

BLAST of Bhi06G001544 vs. ExPASy TrEMBL
Match: A0A5D3BGW4 (TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001060 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 8.5e-113
Identity = 231/283 (81.63%), Postives = 236/283 (83.39%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCY--------------------------KPPFSSAPAAPSKVAEKPK 60
           M+KDN A+AAPTGCY                          KPPFSSAPAAPSK  EKPK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKPK 60

Query: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILPY 120
           KAPRTRPKLTPELLLSEDGLGYVLRHFPR FKYRGRGHEISDL NLIGLYREWHSHILPY
Sbjct: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN-DDDVNNEKEAKDP 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN DDDVNNEKEAKDP
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNEKEAKDP 180

Query: 181 EGIFDNQEEA-LRNNGADDIEEDMLQEVYEKATEEPSQNVQSDSFTIGETIEGVA----N 240
           EG+FDN EEA LRNNGADDIEEDMLQEVYEKATEEP QN QSDS T G T+EGVA    N
Sbjct: 181 EGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGVANQEPN 240

Query: 241 QEPKISNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 251
           QEPK SNSSET +LTEEQR RMEANRLKALERAAAKARSL TV
Sbjct: 241 QEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLATV 283

[Close]

BLAST of Bhi06G001544 vs. ExPASy TrEMBL
Match: A0A1S3C4P4 (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 8.5e-113
Identity = 231/283 (81.63%), Postives = 236/283 (83.39%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCY--------------------------KPPFSSAPAAPSKVAEKPK 60
           M+KDN A+AAPTGCY                          KPPFSSAPAAPSK  EKPK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSSAPAAPSKAVEKPK 60

Query: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILPY 120
           KAPRTRPKLTPELLLSEDGLGYVLRHFPR FKYRGRGHEISDL NLIGLYREWHSHILPY
Sbjct: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN-DDDVNNEKEAKDP 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN DDDVNNEKEAKDP
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNEKEAKDP 180

Query: 181 EGIFDNQEEA-LRNNGADDIEEDMLQEVYEKATEEPSQNVQSDSFTIGETIEGVA----N 240
           EG+FDN EEA LRNNGADDIEEDMLQEVYEKATEEP QN QSDS T G T+EGVA    N
Sbjct: 181 EGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGVANQEPN 240

Query: 241 QEPKISNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 251
           QEPK SNSSET +LTEEQR RMEANRLKALERAAAKARSL TV
Sbjct: 241 QEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLATV 283

[Close]

BLAST of Bhi06G001544 vs. ExPASy TrEMBL
Match: A0A0A0LI96 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.1e-112
Identity = 228/280 (81.43%), Postives = 235/280 (83.93%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYK--------------------------PPFSSAPAAPSKVAEKPK 60
           MEKDN AV APTGC+K                          P FSS PAAPSK  EKPK
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSAPNPNPTSNSSTPSFSSPPAAPSKAVEKPK 60

Query: 61  KAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILPY 120
           KAPRTRPKLTPELLLS+DGLGYVLRHFPR FKYRGRGHEI+DL NLIGLYREWHSHILPY
Sbjct: 61  KAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILPY 120

Query: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNNEKEAKD 180
           YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN  DDDVNNEKEAKD
Sbjct: 121 YSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNNEKEAKD 180

Query: 181 PEGIFDNQEEA-LRNNGADDIEEDMLQEVYEKATEEPSQNVQSDSFTIGETIEGVANQEP 240
           P+ +FDNQEEA LRNNGADDIEEDMLQEVYEKATEEP QN QSDS TIG T+EGVANQEP
Sbjct: 181 PDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEGVANQEP 240

Query: 241 KISNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 251
           K SNSSET +LTEEQR RMEANRLKALERAAAKARSLPTV
Sbjct: 241 KTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV 280

[Close]

BLAST of Bhi06G001544 vs. ExPASy TrEMBL
Match: A0A6J1KG39 (TIMELESS-interacting protein OS=Cucurbita maxima OX=3661 GN=LOC111493575 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 4.0e-110
Identity = 222/276 (80.43%), Postives = 233/276 (84.42%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYK----------------------PPFSSAPAAPSKVAEKPKKAPR 60
           M+KDNAAVAAPTGCYK                      PP SSAPAAP KVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNFSRPPSSSAPAAPPKVAEKPKKAPR 60

Query: 61  TRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILPYYSFE 120
            RPKLTPELLLSEDGLGYVLRHFPR FKYRGRGHEISDL NLIGLYREWHSHILPYY FE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNNEKEAKDPEGI 180
           HFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N  DDD+NNE EAKD EG+
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEA-LRNNGADDIEEDMLQEVYEKAT-EEPSQNVQSDSFTIGETIEGVANQ-EPKI 240
           FDNQEEA L+NNGADDIEEDMLQEVYEKAT EEP  N+QSDSFTIGET+EGV NQ EP  
Sbjct: 181 FDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVEGVVNQEEPNT 240

Query: 241 SNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 250
           SNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

[Close]

BLAST of Bhi06G001544 vs. ExPASy TrEMBL
Match: A0A6J1G4B9 (TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.2e-110
Identity = 222/276 (80.43%), Postives = 233/276 (84.42%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYK----------------------PPFSSAPAAPSKVAEKPKKAPR 60
           M+KDNAAVAAPTGCYK                      PP SSAPAAPSKVAEKPKKAPR
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNSSSPPSSSAPAAPSKVAEKPKKAPR 60

Query: 61  TRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLGNLIGLYREWHSHILPYYSFE 120
            RPKLTPELLLSEDGLGYVLRHFPR FKYRGRGHEISDL NLIGLYREWHSHILPYY FE
Sbjct: 61  VRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYPFE 120

Query: 121 HFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNNEKEAKDPEGI 180
           HFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N  DDD+NNE EAKD EG+
Sbjct: 121 HFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAKDSEGL 180

Query: 181 FDNQEEA-LRNNGADDIEEDMLQEVYEKAT-EEPSQNVQSDSFTIGETIEGVANQ-EPKI 240
           FDNQEEA  +NNGADDIEEDMLQEVYEKAT EEP  N+QSDSFTIGET+EGV NQ EP  
Sbjct: 181 FDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQEEPNT 240

Query: 241 SNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 250
           SNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 SNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

The following BLAST results are available for this feature:

BLAST of Bhi06G001544 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02820.1	6.6e-49	47.29	zinc knuckle (CCHC-type) family protein	[more]

BLAST of Bhi06G001544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5F416	1.3e-09	30.00	TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1	[more]
Q9BVW5	8.4e-09	29.89	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2	[more]
Q3ZCC4	1.9e-08	27.71	TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1	[more]
Q91WA1	9.3e-08	29.29	TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2	[more]
Q4QR88	5.1e-06	25.10	TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1	[more]

BLAST of Bhi06G001544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGW4	8.5e-113	81.63	TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C4P4	8.5e-113	81.63	TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1	[more]
A0A0A0LI96	1.1e-112	81.43	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 P...	[more]
A0A6J1KG39	4.0e-110	80.43	TIMELESS-interacting protein OS=Cucurbita maxima OX=3661 GN=LOC111493575 PE=3 SV...	[more]
A0A6J1G4B9	5.2e-110	80.43	TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 42..123 e-value: 1.5E-23 score: 82.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR13220:SF11	TIMELESS-INTERACTING PROTEIN	coord: 21..245
IPR040038	TIPIN/Csm3/Swi3	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 21..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001544	Bhi06M001544	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0043111	replication fork arrest
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0031298	replication fork protection complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding