Bhi06G001537 (gene) Wax gourd (B227) v1

Overview
NameBhi06G001537
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A2
Locationchr6: 50419856 .. 50420085 (+)
RNA-Seq ExpressionBhi06G001537
SyntenyBhi06G001537
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCCCGGAGACTTCTTGGTTCATCATGCTATTGCTTTAGGTTTACATACGACTACATTGATCTTAGTAAAAGGTTCTTTAGATGCACGTGGTTCCAAATTAATGCCGGATAAAAAGGATTTTGGTTATAGCTTTCCTTGCGACGGTCCAAGACAAGGTGGTACTTGTGATATTTCGGCTTGGGACGCCTTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATAG

mRNA sequence

GGCCCGGAGACTTCTTGGTTCATCATGCTATTGCTTTAGGTTTACATACGACTACATTGATCTTAGTAAAAGGTTCTTTAGATGCACGTGGTTCCAAATTAATGCCGGATAAAAAGGATTTTGGTTATAGCTTTCCTTGCGACGGTCCAAGACAAGGTGGTACTTGTGATATTTCGGCTTGGGACGCCTTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATAG

Coding sequence (CDS)

GGCCCGGAGACTTCTTGGTTCATCATGCTATTGCTTTAGGTTTACATACGACTACATTGATCTTAGTAAAAGGTTCTTTAGATGCACGTGGTTCCAAATTAATGCCGGATAAAAAGGATTTTGGTTATAGCTTTCCTTGCGACGGTCCAAGACAAGGTGGTACTTGTGATATTTCGGCTTGGGACGCCTTTTATTTGGCAGTTTTCTGGATGTTAAATACCATTGGATAG

Protein sequence

PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAWDAFYLAVFWMLNTIG
Homology
[Close]
BLAST of Bhi06G001537 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 161.0 bits (406), Expect = 3.7e-40
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. TAIR 10
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-22
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 0 

Query: 3   DFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAWDA 62
           DFLVHH  A  +H T LIL+KG L AR S+L+PDK + G+ FPCDGP +GGTC +SAWD 
Sbjct: 530 DFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDH 589

Query: 63  FYLAVFWMLNTI 75
            +L +FWM N I
Sbjct: 590 VFLGLFWMYNAI 601

[Close]
BLAST of Bhi06G001537 vs. ExPASy Swiss-Prot
Match: Q3V535 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus OX=4465 GN=psaB PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.2e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. ExPASy Swiss-Prot
Match: A4QJB4 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=434059 GN=psaB PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.2e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. ExPASy Swiss-Prot
Match: A4QJJ8 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=72657 GN=psaB PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.2e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. ExPASy Swiss-Prot
Match: A1EA07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 GN=psaB PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.2e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. ExPASy Swiss-Prot
Match: Q33332 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=psaB PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 5.2e-39
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. ExPASy TrEMBL
Match: K4KLD8 (PsaB (Fragment) OS=Trigonia sp. CCD-2012 OX=1241930 GN=psaB PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGPR+GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPRRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

[Close]
BLAST of Bhi06G001537 vs. ExPASy TrEMBL
Match: A0A072TGF7 (Photosystem I P700 chlorophyll A apoprotein (Fragment) OS=Medicago truncatula OX=3880 GN=MTR_0187s0090 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.9e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGPR+GGTCDISAW
Sbjct: 43  PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPRRGGTCDISAW 102

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLA+FWMLNTIG
Sbjct: 103 DAFYLAIFWMLNTIG 117

[Close]
BLAST of Bhi06G001537 vs. ExPASy TrEMBL
Match: G7IAB8 (Photosystem I P700 chlorophyll A apoprotein OS=Medicago truncatula OX=3880 GN=MTR_1g084890 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.9e-37
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGPR+GGTCDISAW
Sbjct: 65  PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPRRGGTCDISAW 124

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLA+FWMLNTIG
Sbjct: 125 DAFYLAIFWMLNTIG 139

[Close]
BLAST of Bhi06G001537 vs. ExPASy TrEMBL
Match: A0A445EUW8 (Photosystem I P700 chlorophyll a apoprotein A1 OS=Arachis hypogaea OX=3818 GN=Ahy_A01g004097 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 6.6e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1    PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
            PGDFLVHHAIALGLHTTTLILVKG+LDARGSKLMPDKKDFGYSFPCDGP QGGTCDISAW
Sbjct: 1123 PGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGQGGTCDISAW 1182

Query: 61   DAFYLAVFWMLNTIG 76
            DAFYLAVFWMLNTIG
Sbjct: 1183 DAFYLAVFWMLNTIG 1197

[Close]
BLAST of Bhi06G001537 vs. ExPASy TrEMBL
Match: D3WB19 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Dillenia indica OX=4378 GN=psaB PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.7e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPRQGGTCDISAW 60
           PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGP +GGTCDISAW
Sbjct: 514 PGDFLVHHAIALGLHTTTLILVKGSLDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAW 573

Query: 61  DAFYLAVFWMLNTIG 76
           DAFYLAVFWMLNTIG
Sbjct: 574 DAFYLAVFWMLNTIG 588

The following BLAST results are available for this feature:
BLAST of Bhi06G001537 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00340.13.7e-4096.00Photosystem I, PsaA/PsaB protein [more]
ATCG00350.11.6e-2259.72Photosystem I, PsaA/PsaB protein [more]
BLAST of Bhi06G001537 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3V5355.2e-3996.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus OX=4465 GN=psaB... [more]
A4QJB45.2e-3996.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema cordifolium OX=4340... [more]
A4QJJ85.2e-3996.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Aethionema grandiflorum OX=726... [more]
A1EA075.2e-3996.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 ... [more]
Q333325.2e-3996.00Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=p... [more]
BLAST of Bhi06G001537 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K4KLD83.0e-3797.33PsaB (Fragment) OS=Trigonia sp. CCD-2012 OX=1241930 GN=psaB PE=3 SV=1[more]
A0A072TGF73.9e-3796.00Photosystem I P700 chlorophyll A apoprotein (Fragment) OS=Medicago truncatula OX... [more]
G7IAB83.9e-3796.00Photosystem I P700 chlorophyll A apoprotein OS=Medicago truncatula OX=3880 GN=MT... [more]
A0A445EUW86.6e-3797.33Photosystem I P700 chlorophyll a apoprotein A1 OS=Arachis hypogaea OX=3818 GN=Ah... [more]
D3WB198.7e-3797.33Photosystem I P700 chlorophyll a apoprotein A2 OS=Dillenia indica OX=4378 GN=psa... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBPRINTSPR00257PHOTSYSPSAABcoord: 62..75
score: 43.35
coord: 35..55
score: 78.4
coord: 4..22
score: 77.28
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 1..75
e-value: 1.4E-42
score: 145.9
IPR036408Photosystem I PsaA/PsaB superfamilyGENE3D1.20.1130.10Photosystem I PsaA/PsaBcoord: 1..75
e-value: 1.0E-44
score: 154.4
IPR036408Photosystem I PsaA/PsaB superfamilySUPERFAMILY81558Photosystem I subunits PsaA/PsaBcoord: 1..74
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 1..70
NoneNo IPR availablePANTHERPTHR30128:SF65PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A2coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001537Bhi06M001537mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding