Bhi06G001528 (gene) Wax gourd (B227) v1

Overview
NameBhi06G001528
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr6: 50126649 .. 50126885 (-)
RNA-Seq ExpressionBhi06G001528
SyntenyBhi06G001528
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

mRNA sequence

ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

Coding sequence (CDS)

ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

Protein sequence

MVNTPAVNFFSPVFPRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFVPM
Homology
[Close]
BLAST of Bhi06G001528 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.1e-13
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 0 

Query: 1  MVNTPAVNFFSPVFPRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYR 60
          +++TPA +F +P              PLNQ+LNQ+T+IK+D SN+LLW+ LA PIL+ Y+
Sbjct: 11 VLDTPATSFTNP--------------PLNQILNQLTTIKLDRSNYLLWKTLALPILKGYK 70

Query: 61 LEGYLIGENPCPNRFV 77
          LEG+L GE PCP +FV
Sbjct: 71 LEGHLTGEKPCPEKFV 72

[Close]
BLAST of Bhi06G001528 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.1e-13
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 15 PRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCP 73
          P V +    T  PLNQLLNQ+TSIKMD  NFLLWQNLA PILRSY+L  YL G+ PCP
Sbjct: 14 PAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCP 71

[Close]
BLAST of Bhi06G001528 vs. ExPASy TrEMBL
Match: A0A1S4DZ26 (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 18 ANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          ++  N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EGYL GENPCP +F+
Sbjct: 10 SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFI 68

[Close]
BLAST of Bhi06G001528 vs. ExPASy TrEMBL
Match: A0A5D3BVJ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00450 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 22 NITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EG+L GENPCP +F+
Sbjct: 14 NFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFI 68

[Close]
BLAST of Bhi06G001528 vs. ExPASy TrEMBL
Match: A0A5A7V1E0 (Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005070 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.9e-12
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 22 NITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EG+L GENPCP +F+
Sbjct: 14 NFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFI 68

The following BLAST results are available for this feature:
BLAST of Bhi06G001528 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G001528 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G001528 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VCS19.1e-1350.00Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A6J1DCW49.1e-1367.24uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A1S4DZ261.2e-1255.93uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=... [more]
A0A5D3BVJ15.9e-1258.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1E05.9e-1258.18Reverse transcriptase, RNA-dependent DNA polymerase OS=Cucumis melo var. makuwa ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001528Bhi06M001528mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity