Bhi06G001296 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001296
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	60S ribosomal protein L18
Location	chr6: 44047287 .. 44049941 (+)
RNA-Seq Expression	Bhi06G001296
Synteny	Bhi06G001296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAAGAACCCTAGAGCCATTTTCCTTCGCTCTTCGCAGTCGCCGTCGCCGAAGAGAAGGGTTACTCAACGAAGAGCTCCAATGGTCCGTCTCTTTATCTTCCTCTTTCTCTCTTTCATTCTCTTTCTCTGCTTCCAATGGCGTAGATCAATGTCTGAAACGTGTTTCCTTTTATCACAGGGTATTGATCTTGTAGCAGGAGGCAAGAGCAAGAAGACCAAAAGGACTGCCCCCAAGTCCGATGATATCTACCTCAAGCTCCTTGTCAAGGTTGTTTTTTCTAATCATCTTGCTTTCACGTGGGTTTTTCTTAGAATATGGAGATCAGTTATTTTGGATTCCTTTTTTGAATGAAAAAATATGTTGTGATTTTAGTTAAGATATCGTGAATGGAGAACGGAGTTTCCAATCTAATTCTTCCAGCATTATTTTGAACCTCCTTTTTTGTTGTGGTTGAAATCTCGTTGTTTGATAAGAGAGTAGAGCAACACTTATGTGCAGTGATGATATTTGTGTATCCCAGCTCATTATGAGATCTTTCGTAGGTCAAGGAATGAACGATTTCCACATTTATCTGAGCCCAGGTTTAGATTTAATTTTCTTCTTCAGTTTGAACTATGAAGCAGAAGATATCGTTAATCATTGCCCTTTAGTAAATTGTATCTATTCTTGTTCTCATGGAGTCAATGTTTTAATTTCTTTTTTAATTATACTTAAAATGGAACGCGATTGTTTTATCAGACGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTCTAAAGGTCAAGGACTGGACTATGTTCACATATTTATCTGAGCTCAAAGTATTCTACCTCAGAAGTTTGTTTCATGTGCTTTTGAATTTGGAAGTAAAATAAAGATGAAAAATATGGGTCGTGTATAAATTACCGAACCCCTTGGCGCTTCCTTTTGCTGTTTCAATCGATGACTTCTTTTTCCCTGCATTTTGTAAAGGATGTGCTGGCTTTTCAATACTGATAGTTCCCTGTGATGTTTTGTGTTTTTTAACCATGCTAATACTGATCACTAAGGCTCTGCTGGGTAATCATCTTGTTTTTTTGTTTTTTCTTGAAAATAAAACCTATGTACACTACTTCACCTCCAAATTTCTTCCATTGTTATCTACTTTTCATCCATGGTTTAAAAAACCAAGCCAAATTTTGAGAACTAAAAAAGTAGCCTTCAAAAGGTTGCTTTTGTTTTTGGAATTTGGCTAAGAATTCAACCATTGTACTTAAGAAAGATGCAAATCACTGTAAAAAATGTTGATGAAATAGGATTAATTTTCAAAAACAAAAACCAAAAAGCAAATGGTTATCAGATGGAGCCTAAATGACTGATCTTCAAGTTTTCTCTGAGGGAACTGGCCTGTAGTCTTAAATCAATTATTTCCATAAGAGCTTTGTGTCCTTTTGCGTATCTATTATTTTAAATTTTTTTTCCTCCAAGCTCAATAATGTGGGTTTGTAATCCAAACTGGGGAATCTATGTGGTTGTTGTTGGGTCTCTTCCCTTTTTTCTGTGGTTGAAATCAGCTATGATTTGTTCCATGCTTTACAACATTTTTATCATTTAATTATGCTTATTTGGGTTGCTTAAACAACGGATCTTTATTGTGTTTAATGAATTCAGTTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTACATGAAGGGAAAGGTGTGTGCTTCTATTATGCACTACACTTTCTTTACATTTTGATTTCCGCTTTCTAGGAGTCATATAACATTATCTAAATTCTCTGGTGGTTAACATGGTGTAGGAAGAAAAAGTTGCCGTCATTGTTGGAACTGTGACAGATGACATTCGTGTCTATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTTGGCCAGAATACGGTACGATGCTTATGCTAATGCAACTGTGATGCTTGTATAAGGCTCCTCAATAGACATAAATAACAAACAAATAAATAAAATGCCGCTGAATGTTATATATGCCTATTTTATTCACCTGTCCTCTAATTTGATCAGTTCATGCTTATCTTGGTAGCCGCCAGTTTGTCAAACAACATGGACGAATGCTTAGATTCAATACTTAATGTTCTGTTAATTTTTGGTTTCGAAGGTTCTTCTTCGTGGACCTAAGAACTCTCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTGCCTCACAGCCACACGAAACCATACGTGAGGTCAAAGGGAAGGAAGTTCGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAGTTTCAGTATATGTTCAACCCTTTTTGTGAGACAAAATATTCACGTTTTGCTAGACTTGCAGAAATATTATTATGTGAGATTCAGTCATGTCTTAGTACAAGTTTTCCTTATAAAACCAAAATCGGATTCACTGGAAGATATTGTTTCAAGACTTCGCATTTTTTTTCTCAGTTAACTTCATCTGATTGTT

mRNA sequence

TTAAAGAACCCTAGAGCCATTTTCCTTCGCTCTTCGCAGTCGCCGTCGCCGAAGAGAAGGGTTACTCAACGAAGAGCTCCAATGGGTATTGATCTTGTAGCAGGAGGCAAGAGCAAGAAGACCAAAAGGACTGCCCCCAAGTCCGATGATATCTACCTCAAGCTCCTTGTCAAGTTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTACATGAAGGGAAAGGAAGAAAAAGTTGCCGTCATTGTTGGAACTGTGACAGATGACATTCGTGTCTATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCTAAGAACTCTCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTGCCTCACAGCCACACGAAACCATACGTGAGGTCAAAGGGAAGGAAGTTCGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAGTTTCAGTATATGTTCAACCCTTTTTGTGAGACAAAATATTCACGTTTTGCTAGACTTGCAGAAATATTATTATGTGAGATTCAGTCATGTCTTAGTACAAGTTTTCCTTATAAAACCAAAATCGGATTCACTGGAAGATATTGTTTCAAGACTTCGCATTTTTTTTCTCAGTTAACTTCATCTGATTGTT

Coding sequence (CDS)

ATGGGTATTGATCTTGTAGCAGGAGGCAAGAGCAAGAAGACCAAAAGGACTGCCCCCAAGTCCGATGATATCTACCTCAAGCTCCTTGTCAAGTTGTACCGGTTTCTTGTTCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTACATGAAGGGAAAGGAAGAAAAAGTTGCCGTCATTGTTGGAACTGTGACAGATGACATTCGTGTCTATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAGGTTTACTGAGACTGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGTTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCTAAGAACTCTCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTGCCTCACAGCCACACGAAACCATACGTGAGGTCAAAGGGAAGGAAGTTCGAGAGAGCAAGAGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAG

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV

Homology

[Close]

BLAST of Bhi06G001296 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-90
Identity = 162/187 (86.63%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK++K+AV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi06G001296 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 328.6 bits (841), Expect = 3.4e-90
Identity = 161/187 (86.10%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GKE+K+AV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi06G001296 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-54
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL++YM GK+ K+AVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGFRV 188
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Bhi06G001296 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-54
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL++YM GK+ K+AVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGFRV 188
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Bhi06G001296 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 2.1e-89
Identity = 162/187 (86.63%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GK++K+AV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-89
Identity = 161/187 (86.10%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++M GKE+K+AV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.7e-84
Identity = 158/184 (85.87%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIKYM+GKE K+ V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GFRV 188
           GFRV
Sbjct: 181 GFRV 183

[Close]

BLAST of Bhi06G001296 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 295.0 bits (754), Expect = 5.8e-79
Identity = 150/188 (79.79%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++YM GK+ K+AVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGFRV 188
           R SRGF+V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Bhi06G001296 vs. ExPASy Swiss-Prot
Match: P35980 (60S ribosomal protein L18 OS=Mus musculus OX=10090 GN=Rpl18 PE=1 SV=3)

HSP 1 Score: 246.1 bits (627), Expect = 3.1e-64
Identity = 125/188 (66.49%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT S FN V+LKRLFMS+ N+P
Sbjct: 1   MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRP 60

Query: 61  PISLSRLIKYMK--GKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
           P+SLSR+I+ MK  G+E K AV+VGTVTDD+R+ EVP LKV ALR +  AR+RI KAGG+
Sbjct: 61  PLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGK 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 180
            LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFERARG
Sbjct: 121 ILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRNSRGFR 187
           +R SRG++
Sbjct: 181 RRASRGYK 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy TrEMBL
Match: A0A5A7U3L4 (60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001430 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 188
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 183/187 (97.86%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE+K+AVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 188
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy TrEMBL
Match: A0A1S3BYV3 (60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIKYMKGKE K+AV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 188
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 182/187 (97.33%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE+K+AVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 188
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Bhi06G001296 vs. ExPASy TrEMBL
Match: A0A6J1DTG6 (60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.6e-95
Identity = 182/187 (97.33%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKYMKGKEEKVAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+MKGKE K+AVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 188
           NSRGFRV
Sbjct: 181 NSRGFRV 187

The following BLAST results are available for this feature:

BLAST of Bhi06G001296 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27850.1	1.5e-90	86.63	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	3.4e-90	86.10	ribosomal protein L18	[more]
AT2G47570.1	2.3e-54	77.78	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	2.3e-54	77.78	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Bhi06G001296 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940B0	2.1e-89	86.63	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
P42791	4.7e-89	86.10	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
O65729	2.7e-84	85.87	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	5.8e-79	79.79	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
P35980	3.1e-64	66.49	60S ribosomal protein L18 OS=Mus musculus OX=10090 GN=Rpl18 PE=1 SV=3	[more]

BLAST of Bhi06G001296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3L4	1.2e-95	97.86	60S ribosomal protein L18-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1HQ85	1.2e-95	97.86	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A1S3BYV3	1.2e-95	97.86	60S ribosomal protein L18-3 OS=Cucumis melo OX=3656 GN=LOC103494561 PE=3 SV=1	[more]
A0A6J1KGZ8	2.7e-95	97.33	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=...	[more]
A0A6J1DTG6	4.6e-95	97.33	60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 1..187 e-value: 9.4E-101 score: 336.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..186
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 e-value: 2.9E-95 score: 317.0
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..186
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001296	Bhi06M001296	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome