|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAAAATTCTGGTGGGACTCCCACACAAAGAACAATCAAAGGTACAGTCTCATGGCAACAGTTCAATCAAGCTTTTTACAACAAGTATTTCCCTTTGACAGTGAGATATCAAAAGGAAGTGGAATTTCTTAATCTTCGTCAAGAGAATATGTTAGTGGCAGAATATGAACGGAAATTTGATCGCTTGTCTCACTTTGTTCCTCGACTAGTGGACACAGAAGAAAAGAAGGTGGAAAGGTTTATATGGGGATTAAGAGAAGGCATTCGAGCCATTGTTACTGCTTTCCGACACAAAGAGTATTGCTCTTGCCCTCGAGTCGGCCTTACTCATGGAAGTAGATCTTGTTGCCAAAACCTCAACCTCGGAACGAGGATTCATGCCAAATCAAAAGAGGAAACTCACCCAACAAGGCTTCCAACGTTCACAACGGCAGAAAAAAATTTCCCAAAACACTCAGAAGCATACAGTCACAACAGAGAAGCCGAACATTTACATATTCTAAGTGTAGAAATTGTGGAAAAACACCATCAGGGGCAATGTTTTCAGAACATAAGGGGTGTTTCAACTACGGCCAGACGGGTCACTATGCAAGGGCTTGCCCAAAGTTCATCAACCAAGTATCAGCTACCCAGACCACTCAGCCTACTAGTAACAAGGTTACTCAACAACAGAAAGGGACGGGTGTTTGCTGTTACACGTCAAGAGGCAGAAAATCAAGATGCAGTGGTTACAGGTACATTACCCATCCGCGAGTATTATGACTTCACTTTATTTGATTCGGGCTCTA mRNA sequence ATGCAAAATTCTGGTGGGACTCCCACACAAAGAACAATCAAAGGTACAGTCTCATGGCAACAGTTCAATCAAGCTTTTTACAACAAGTATTTCCCTTTGACAGTGAGATATCAAAAGGAAGTGGAATTTCTTAATCTTCGTCAAGAGAATATGTTAGTGGCAGAATATGAACGGAAATTTGATCGCTTGTCTCACTTTGTTCCTCGACTAGTGGACACAGAAGAAAAGAAGGTGGAAAGGTTTATATGGGGATTAAGAGAAGGCATTCGAGCCATTGTTACTGCTTTCCGACACAAAGAGTATTGCTCTTGCCCTCGAGTCGGCCTTACTCATGGAAGTAGATCTTGTTGCCAAAACCTCAACCTCGGAACGAGGATTCATGCCAAATCAAAAGAGGAAACTCACCCAACAAGGCTTCCAACGTTCACAACGGCAGAAAAAAATTTCCCAAAACACTCAGAAGCATACAGTCACAACAGAGAAGCCGAACATTTACATATTCTAAGTGTAGAAATTGTGGAAAAACACCATCAGGGGCAATGTTTTCAGAACATAAGGGGTGTTTCAACTACGGCCAGACGGGTCACTATGCAAGGGCTTGCCCAAAGTTCATCAACCAAGTATCAGCTACCCAGACCACTCAGCCTACTAGTAACAAGGTTACTCAACAACAGAAAGGGACGGGTGTTTGCTGTTACACGTCAAGAGGCAGAAAATCAAGATGCAGTGGTTACAGGTACATTACCCATCCGCGAGTATTATGACTTCACTTTATTTGATTCGGGCTCTA Coding sequence (CDS) ATGCAAAATTCTGGTGGGACTCCCACACAAAGAACAATCAAAGGTACAGTCTCATGGCAACAGTTCAATCAAGCTTTTTACAACAAGTATTTCCCTTTGACAGTGAGATATCAAAAGGAAGTGGAATTTCTTAATCTTCGTCAAGAGAATATGTTAGTGGCAGAATATGAACGGAAATTTGATCGCTTGTCTCACTTTGTTCCTCGACTAGTGGACACAGAAGAAAAGAAGGTGGAAAGGTTTATATGGGGATTAAGAGAAGGCATTCGAGCCATTGTTACTGCTTTCCGACACAAAGAGTATTGCTCTTGCCCTCGAGTCGGCCTTACTCATGGAAGTAGATCTTGTTGCCAAAACCTCAACCTCGGAACGAGGATTCATGCCAAATCAAAAGAGGAAACTCACCCAACAAGGCTTCCAACGTTCACAACGGCAGAAAAAAATTTCCCAAAACACTCAGAAGCATACAGTCACAACAGAGAAGCCGAACATTTACATATTCTAAGTGTAGAAATTGTGGAAAAACACCATCAGGGGCAATGTTTTCAGAACATAAGGGGTGTTTCAACTACGGCCAGACGGGTCACTATGCAAGGGCTTGCCCAAAGTTCATCAACCAAGTATCAGCTACCCAGACCACTCAGCCTACTAGTAACAAGGTTACTCAACAACAGAAAGGGACGGGTGTTTGCTGTTACACGTCAAGAGGCAGAAAATCAAGATGCAGTGGTTACAGGTACATTACCCATCCGCGAGTATTATGACTTCACTTTATTTGATTCGGGCTCTA Protein sequence MQNSGGTPTQRTIKGTVSWQQFNQAFYNKYFPLTVRYQKEVEFLNLRQENMLVAEYERKFDRLSHFVPRLVDTEEKKVERFIWGLREGIRAIVTAFRHKEYCSCPRVGLTHGSRSCCQNLNLGTRIHAKSKEETHPTRLPTFTTAEKNFPKHSEAYSHNREAEHLHILSVEIVEKHHQGQCFQNIRGVSTTARRVTMQGLAQSSSTKYQLPRPLSLLVTRLLNNRKGRVFAVTRQEAENQDAVVTGTLPIREYYDFTLFDSGS
Homology
BLAST of Bhi06G001165 vs. ExPASy TrEMBL
Match: A0A5A7VBY3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00920 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24 Identity = 93/263 (35.36%), Postives = 128/263 (48.67%), Query Frame = 0 Query: 10 QRTIKGTVS---WQQFNQAFYNKYFPLTVRYQKEVEFLNLRQENMLVAEYERKFDRLSHF 69 +R + G VS W+QF + FY K+F V++ K EFLNL Q +M V +Y+ +FD LS F Sbjct: 387 ERMLGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRF 446
Query: 70 VPRLVDTEEKKVERFIWGLREGIRAIVTAFRHKEYCSCPRVGLT---HGSRSCCQNLNLG 129 +P +V E + E+F+ GLR ++ IV A R + R+ L H + + Sbjct: 447 LPDVVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALNLSLHERVDSSKAASRR 506
Query: 130 TRIHAKSKEETHPTRLPTFTTAEKN-FPKH-SEAYSHNREAEHLHILSVEIVEKHHQGQC 189 T + K K ET P +P T F +H E + R L + + H+G+C Sbjct: 507 TALGQKRKVETQPDMIPQRTLRSGGVFQRHLRELAAAGRTLRELPACTT--CGRVHEGRC 566
Query: 190 FQNIRGVSTTARRVTMQGLAQSSSTKYQLPR-PLSLLVTRLLNNRKGRVFAVTRQEAENQ 249 GV R Q T PR P + +++GRVFA TRQEAE Sbjct: 567 LAG-SGVCFRCR--------QPGHTADPCPRKPFETTPHQPSASQQGRVFATTRQEAERA 626
Query: 250 DAVVTGTLPIREYYDFTLFDSGS 264 VVTGTLPI +Y F LFDSGS Sbjct: 627 GTVVTGTLPILGHYAFVLFDSGS 638
BLAST of Bhi06G001165 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24 Identity = 93/263 (35.36%), Postives = 128/263 (48.67%), Query Frame = 0 Query: 10 QRTIKGTVS---WQQFNQAFYNKYFPLTVRYQKEVEFLNLRQENMLVAEYERKFDRLSHF 69 +R + G VS W+QF + FY K+F V++ K EFLNL Q +M V +Y+ +FD LS F Sbjct: 204 ERMLGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRF 263
Query: 70 VPRLVDTEEKKVERFIWGLREGIRAIVTAFRHKEYCSCPRVGLT---HGSRSCCQNLNLG 129 +P +V E + E+F+ GLR ++ IV A R + R+ L H + + Sbjct: 264 LPDVVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALNLSLHERVDSSKAASRR 323
Query: 130 TRIHAKSKEETHPTRLPTFTTAEKN-FPKH-SEAYSHNREAEHLHILSVEIVEKHHQGQC 189 T + K K ET P +P T F +H E + R L + + H+G+C Sbjct: 324 TALGQKRKVETQPDMIPQRTLRSGGVFQRHLRELAAAGRTLRELPACTT--CGRVHEGRC 383
Query: 190 FQNIRGVSTTARRVTMQGLAQSSSTKYQLPR-PLSLLVTRLLNNRKGRVFAVTRQEAENQ 249 GV R Q T PR P + +++GRVFA TRQEAE Sbjct: 384 LAG-SGVCFRCR--------QPGHTADPCPRKPFETTPHQPSASQQGRVFATTRQEAERA 443
Query: 250 DAVVTGTLPIREYYDFTLFDSGS 264 VVTGTLPI +Y F LFDSGS Sbjct: 444 GTVVTGTLPILGHYAFVLFDSGS 455
BLAST of Bhi06G001165 vs. ExPASy TrEMBL
Match: A0A5D3D772 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00040 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 7.8e-24 Identity = 87/253 (34.39%), Postives = 126/253 (49.80%), Query Frame = 0 Query: 17 VSWQQFNQAFYNKYFPLTVRYQKEVEFLNLRQENMLVAEYERKFDRLSHFVPRLVDTEEK 76 ++W+QF ++FY K+F V+Y K+ +FLNL Q +M+V +Y+ +FD LS F P +V E+ Sbjct: 40 INWEQFKESFYTKFFSANVKYAKQQKFLNLEQGDMIVEQYDAEFDMLSRFAPNVVKDEKA 99
Query: 77 KVERFIWGLREGIRAIVTAFRHKEYCSCPRVGL---THGSRSCCQNLNLGTRIHAKSKEE 136 + E+F+ GLR ++ IV A R + R+ L H + G+ + K K E Sbjct: 100 RTEKFVRGLRLDLQGIVRALRPTTHVDALRLVLDLSLHERADLSKVAGRGSTLRQKRKLE 159
Query: 137 THPTRLPTFTTAEKN-FPKH-SEAYSHNREAEHLHILSVEIVEKHHQGQCFQNIRGVSTT 196 + P P + F +H E + R L + S + H G+C R V Sbjct: 160 SQPDLTPQRNLRSRGVFQRHRRELAAAGRTLRELPVCS--SCGRVHGGRCLVESR-VCFK 219
Query: 197 ARRVTMQGLAQSSSTKYQLPR-PLSLLVTRLLNNRKGRVFAVTRQEAENQDAVVTGTLPI 256 R Q T PR P+ + +++GRVFA T QEAE VVTGTLPI Sbjct: 220 CR--------QPRHTADACPRKPIETTPHQPPASQQGRVFATTHQEAERASTVVTGTLPI 279
Query: 257 REYYDFTLFDSGS 264 +Y F LFDSGS Sbjct: 280 VGHYAFVLFDSGS 281
BLAST of Bhi06G001165 vs. ExPASy TrEMBL
Match: A0A5A7VG30 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G003060 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23 Identity = 92/263 (34.98%), Postives = 127/263 (48.29%), Query Frame = 0 Query: 10 QRTIKGTVS---WQQFNQAFYNKYFPLTVRYQKEVEFLNLRQENMLVAEYERKFDRLSHF 69 +R + G VS W+QF + FY K+F V++ K +FLNL Q +M V +Y+ +FD LSHF Sbjct: 161 ERMLGGDVSKITWEQFKENFYAKFFSANVKHAKLQKFLNLEQGDMTVEQYDAEFDMLSHF 220
Query: 70 VPRLVDTEEKKVERFIWGLREGIRAIVTAFRHKEYCSCPRVGLTHG---SRSCCQNLNLG 129 P +V E + E+F+ GLR ++ IV A R + R+ L + G Sbjct: 221 APDMVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRG 280
Query: 130 TRIHAKSKEETHPTRLPTFTTAEKN-FPKH-SEAYSHNREAEHLHILSVEIVEKHHQGQC 189 + + K K ET P +P T F +H E + R L + E+ H G+C Sbjct: 281 SALGQKGKVETQPDVVPQQTLRSGGVFQRHRRELAAAGRTLRELPTCTT--CERVHGGRC 340
Query: 190 FQNIRGVSTTARRVTMQGLAQSSSTKYQLPR-PLSLLVTRLLNNRKGRVFAVTRQEAENQ 249 GV R Q T PR P + +++GRVFA TRQ+AE Sbjct: 341 LAG-SGVCFRCR--------QPGHTADVCPRKPFETTPPQPSASQQGRVFATTRQDAERA 400
Query: 250 DAVVTGTLPIREYYDFTLFDSGS 264 VVTGTLPI +Y F LFDSGS Sbjct: 401 GTVVTGTLPILGHYAFVLFDSGS 412
BLAST of Bhi06G001165 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23 Identity = 88/253 (34.78%), Postives = 123/253 (48.62%), Query Frame = 0 Query: 17 VSWQQFNQAFYNKYFPLTVRYQKEVEFLNLRQENMLVAEYERKFDRLSHFVPRLVDTEEK 76 ++W+QF + FY K+F V++ K EFLNL Q +M V +Y+ +FD LS F P +V E Sbjct: 9 ITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDVEFDMLSRFAPDVVRDEAA 68
Query: 77 KVERFIWGLREGIRAIVTAFRHKEYCSCPRVGL---THGSRSCCQNLNLGTRIHAKSKEE 136 + E+F+ GLR ++ IV A R + R+ L H + G + K K E Sbjct: 69 RTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLHERADSSKAAGRGLALGQKRKVE 128
Query: 137 THPTRLPTFTTAEKN-FPKH-SEAYSHNREAEHLHILSVEIVEKHHQGQCFQNIRGVSTT 196 T P +P T + F +H E + R L L+ + H+G+C GV Sbjct: 129 TQPDVVPQRTLRSRGVFQRHRRELAAAGRTLREL--LACTTCGRVHEGRCLAG-SGVCFK 188
Query: 197 ARRVTMQGLAQSSSTKYQLPR-PLSLLVTRLLNNRKGRVFAVTRQEAENQDAVVTGTLPI 256 R Q T PR P + +++GRVFA TRQEAE VV GTLPI Sbjct: 189 CR--------QPGHTADVCPRKPFETTPPQPSASQQGRVFATTRQEAERAGTVVIGTLPI 248
Query: 257 REYYDFTLFDSGS 264 +Y F +FDSGS Sbjct: 249 LGHYAFVVFDSGS 250
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VBY3 | 4.6e-24 | 35.36 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61... | [more] |
A0A5D3BZN1 | 4.6e-24 | 35.36 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14... | [more] |
A0A5D3D772 | 7.8e-24 | 34.39 | Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A5A7VG30 | 1.0e-23 | 34.98 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21... | [more] |
A0A5A7VMR4 | 1.7e-23 | 34.78 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55... | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR005162 | Retrotransposon gag domain | PFAM | PF03732 | Retrotrans_gag | coord: 10..87 e-value: 2.4E-15 score: 56.6 |
None | No IPR available | PFAM | PF08284 | RVP_2 | coord: 226..262 e-value: 8.1E-5 score: 22.4 |
None | No IPR available | PANTHER | PTHR34482:SF4 | POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | coord: 14..187 |
None | No IPR available | PANTHER | PTHR34482 | DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE | coord: 14..187 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003824 |
catalytic activity |
|