Bhi06G001125 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001125
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ribonuclease H
Location	chr6: 37536428 .. 37537052 (-)
RNA-Seq Expression	Bhi06G001125
Synteny	Bhi06G001125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAGAAGAGCTCAAGGGTATGCAGCGTGGGCTAAAGATCTCCGAGAAAGCACTTCACCGATGACTCATACTAGGGACCTAGGATATTTTGGACATTTTCATTGATTGTTTCTTTTTTTTTTTTAATTATTATTTTCTTTTTTCGTAAATTTGTTCATTACTCAATAAAGTTCGTTCATTCATTATACATTTTTTTTTCATTACTCTGAGGTCACTCTTTTAAAATCAAAACAGAAAACCAAAGTAGCTCGATCACTGAGAATTCATAAAATACATTTCACAAGAAGCAAGGTTAAAGCTATAGAAGAAAAAGCAGAGCAAGAGAAAAAGTGGAGGCCATCTTGGCTGCTCTAGAAAAGGGGAAAATGATAGCAGACATGACCCTACTGAAAATCCAGCTAACGACTTGCCATTCCCACCAAGTTTTGGGCCACCTTTGTCAGCAAAAGGATCAGTACCACATTATACATCATACAATCCCATGTATGATATACCAACAGGACATTACACGTATCCTAATGCGAAAGTCTCGGGAAGGAATCAGCCTGGTATTTCAGCTCAGAAGCAAGAGACGTCCAATGTACCTTTCATTATGCCTAACTTGTATGACCCTGAAGTCTGA

mRNA sequence

ATGGCCAGAAGAGCTCAAGGGTATGCAGCAATTCATAAAATACATTTCACAAGAAGCAAGGTTAAAGCTATAGAAGAAAAAGCAGAGCAAGAGAAAAAAAAAGGGGAAAATGATAGCAGACATGACCCTACTGAAAATCCAGCTAACGACTTGCCATTCCCACCAAGTTTTGGGCCACCTTTGTCAGCAAAAGGATCAGTACCACATTATACATCATACAATCCCATGTATGATATACCAACAGGACATTACACGTATCCTAATGCGAAAGTCTCGGGAAGGAATCAGCCTGGTATTTCAGCTCAGAAGCAAGAGACGTCCAATGTACCTTTCATTATGCCTAACTTGTATGACCCTGAAGTCTGA

Coding sequence (CDS)

ATGGCCAGAAGAGCTCAAGGGTATGCAGCAATTCATAAAATACATTTCACAAGAAGCAAGGTTAAAGCTATAGAAGAAAAAGCAGAGCAAGAGAAAAAAAAAGGGGAAAATGATAGCAGACATGACCCTACTGAAAATCCAGCTAACGACTTGCCATTCCCACCAAGTTTTGGGCCACCTTTGTCAGCAAAAGGATCAGTACCACATTATACATCATACAATCCCATGTATGATATACCAACAGGACATTACACGTATCCTAATGCGAAAGTCTCGGGAAGGAATCAGCCTGGTATTTCAGCTCAGAAGCAAGAGACGTCCAATGTACCTTTCATTATGCCTAACTTGTATGACCCTGAAGTCTGA

Protein sequence

MARRAQGYAAIHKIHFTRSKVKAIEEKAEQEKKKGENDSRHDPTENPANDLPFPPSFGPPLSAKGSVPHYTSYNPMYDIPTGHYTYPNAKVSGRNQPGISAQKQETSNVPFIMPNLYDPEV

Homology

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BLAST of Bhi06G001125 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.0e-04
Identity = 31/81 (38.27%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 18 RSKVKAIEEKAEQEKKKGENDSRHDPTENPANDLPFPPSFGPPLS--AKGSVPHYTSYNP 77
          R K+  I    E+ K   +  +  +P   P    P+PP +GPPL   A+G +P YT+YNP
Sbjct: 19 REKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNP 78

Query: 78 MYDIPTGHYTYPNAKVSGRNQ 97
          +YD+P G   YP+  V G  Q
Sbjct: 79 LYDVPIGQ--YPHTFVKGAQQ 97

The following BLAST results are available for this feature:

BLAST of Bhi06G001125 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G001125 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G001125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ90	7.0e-04	38.27	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001125	Bhi06M001125	mRNA