Bhi06G001041 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G001041
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem II CP47 reaction center protein
Location	chr6: 34410032 .. 34411030 (+)
RNA-Seq Expression	Bhi06G001041
Synteny	Bhi06G001041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGACAGAGAAGAAGTCGGTCATCTTGATCAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATATATGAAATAGATTCCAAAATATTAGAACAAATATTAGAACTATGATTCATACTTATCAGACCTCGTGGCTGGACTCCTAACAAACAAATGTTTCTTTGTCTTTTTTACATTATATTCAGTCATTGAATAAGCATTGAATAAGTGATAATCCAAGGGTTCTTACTCAGTGAATTTTTTAACTTTTTTTGGAAGGTTTTTTTTTTTTATTGAATCATCGTGGTTCTAGTCTGAATCTAAGGTTTAGAAAAACCTATTCATGGGGGGGTTGGAGTATCATAGGAGGGACTATAACGAATCCGAGTATTTAGAGTAACGAAGGTGTGGCTGGAGCACATATTGTGTTTTCTGGATTGTGCTTCATAGCAGCTGGCATTTGGTGTAATGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCTGAAAATTTTTTGAATTCATTTATTTCTCTCAGGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCTATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGGTACATTGGGCATATTAGCAGGCCTATTCCATCTTAGTGTTCGTCCGCCCAACGTCTATACAAAGGATTACATATGAGAAATATTGAAATCGTACTTTCGAGTAGTATCGCTGCTGTATTTTTTGCAGCTTTTGTTGTTGCCGGAACTATGAGGTATGGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA

mRNA sequence

ATGAGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCTATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGCTTTTGTTGTTGCCGGAACTATGAGGTATGGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA

Coding sequence (CDS)

ATGAGGTTGGGTTGGTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTATGGTCTGGGAATATGGGTATCTGATCCTTATGGATTAACCGGAAGGGTACAAGCTATAAATCCTGCGTGGGGTGTCGAAGGGTTTGATCCTTTTGTTTTGGGCGGAATAGCCTCACATCATATTGCAGCAGCTTTTGTTGTTGCCGGAACTATGAGGTATGGTTCAGAAATTACCTCGATTGAATTATTTGGGCCCACTCATTATCAATGGGATCAGGGATACTTCCAGTAA

Protein sequence

MRLGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVAGTMRYGSEITSIELFGPTHYQWDQGYFQ

Homology

[Close]

BLAST of Bhi06G001041 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-36
Identity = 78/131 (59.54%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWGVEGFDPFV GGIASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]

BLAST of Bhi06G001041 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.1e-37
Identity = 82/134 (61.19%), Postives = 83/134 (61.94%), Query Frame = 0


Query: 3   LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA--- 62
           LG FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA   
Sbjct: 148 LGCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGT 207

Query: 63  ----------------------------------------AAFVVAGTMRYGSEITSIEL 94
                                                   AAFVVAGTM YGS  T IEL
Sbjct: 208 LGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIEL 267

[Close]

BLAST of Bhi06G001041 vs. ExPASy Swiss-Prot
Match: Q09WZ1 (Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-36
Identity = 80/131 (61.07%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTGRVQA+NPAWGVEGFDPFV GGIASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGRVQAVNPAWGVEGFDPFVPGGIASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]

BLAST of Bhi06G001041 vs. ExPASy Swiss-Prot
Match: A6MMN3 (Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 80/134 (59.70%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 3   LGWFGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA--- 62
           L  FGFGAFHVTGLYG GIWVSDPYGLTG+VQ+INPAWGVEGFDPFV GGIASHHIA   
Sbjct: 148 LACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQSINPAWGVEGFDPFVPGGIASHHIAAGT 207

Query: 63  ----------------------------------------AAFVVAGTMRYGSEITSIEL 94
                                                   AAFVVAGTM YGS  T IEL
Sbjct: 208 LGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIEL 267

[Close]

BLAST of Bhi06G001041 vs. ExPASy Swiss-Prot
Match: A4GGD1 (Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris OX=3885 GN=psbB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 77/131 (58.78%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTGR+Q++NPAWGVEGFDPFV GG+ASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGRIQSVNPAWGVEGFDPFVPGGVASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]

BLAST of Bhi06G001041 vs. ExPASy Swiss-Prot
Match: Q2PMQ9 (Photosystem II CP47 reaction center protein OS=Glycine max OX=3847 GN=psbB PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-35
Identity = 77/131 (58.78%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIA------ 65
           FGFGAFHVTGLYG GIWVSDPYGLTGR+Q++NPAWGVEGFDPFV GG+ASHHIA      
Sbjct: 151 FGFGAFHVTGLYGPGIWVSDPYGLTGRIQSVNPAWGVEGFDPFVPGGVASHHIAAGTLGI 210

Query: 66  -------------------------------------AAFVVAGTMRYGSEITSIELFGP 94
                                                AAFVVAGTM YGS  T IELFGP
Sbjct: 211 LAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGP 270

[Close]

BLAST of Bhi06G001041 vs. ExPASy TrEMBL
Match: A0A446Y8Q5 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G045240 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQ +NPAWG EGFDPFVLGGIASHHI AAFVVA
Sbjct: 81  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQVVNPAWGAEGFDPFVLGGIASHHIVAAFVVA 140

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPTHYQWD GYFQ
Sbjct: 141 GTMWYGSATTPIELFGPTHYQWDHGYFQ 168

[Close]

BLAST of Bhi06G001041 vs. ExPASy TrEMBL
Match: Q7G3E9 (Os10g0356500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNAb0075K12.30 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 27  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 86

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 87  GTMWYGSATTPIELFGPTRYQWDQGYFQ 114

[Close]

BLAST of Bhi06G001041 vs. ExPASy TrEMBL
Match: A0A6G1C1Q6 (Uncharacterized protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_026670 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 6  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
          FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 4  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 63

Query: 66 GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
          GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 64 GTMWYGSATTPIELFGPTRYQWDQGYFQ 91

[Close]

BLAST of Bhi06G001041 vs. ExPASy TrEMBL
Match: A0A452YMI5 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 6   FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
           FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 63  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 122

Query: 66  GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
           GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 123 GTMWYGSATTPIELFGPTRYQWDQGYFQ 150

[Close]

BLAST of Bhi06G001041 vs. ExPASy TrEMBL
Match: A0A452YMJ0 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 6  FGFGAFHVTGLYGLGIWVSDPYGLTGRVQAINPAWGVEGFDPFVLGGIASHHIAAAFVVA 65
          FGFGAFHVTGLYG GIWVSDPYGLTG+VQA+NPAWG EGFDPFV GGIASHHIAAAFVVA
Sbjct: 9  FGFGAFHVTGLYGPGIWVSDPYGLTGKVQAVNPAWGAEGFDPFVPGGIASHHIAAAFVVA 68

Query: 66 GTMRYGSEITSIELFGPTHYQWDQGYFQ 94
          GTM YGS  T IELFGPT YQWDQGYFQ
Sbjct: 69 GTMWYGSATTPIELFGPTRYQWDQGYFQ 96

The following BLAST results are available for this feature:

BLAST of Bhi06G001041 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	1.8e-36	59.54	photosystem II reaction center protein B	[more]

BLAST of Bhi06G001041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD63	6.1e-37	61.19	Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P...	[more]
Q09WZ1	3.0e-36	61.07	Photosystem II CP47 reaction center protein OS=Morus indica OX=248361 GN=psbB PE...	[more]
A6MMN3	1.1e-35	59.70	Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 ...	[more]
A4GGD1	1.1e-35	58.78	Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris OX=3885 GN=psb...	[more]
Q2PMQ9	1.1e-35	58.78	Photosystem II CP47 reaction center protein OS=Glycine max OX=3847 GN=psbB PE=3 ...	[more]

BLAST of Bhi06G001041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A446Y8Q5	2.3e-39	87.50	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G...	[more]
Q7G3E9	3.9e-39	88.64	Os10g0356500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNAb0075K12.3...	[more]
A0A6G1C1Q6	3.9e-39	88.64	Uncharacterized protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 G...	[more]
A0A452YMI5	3.9e-39	88.64	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A452YMJ0	3.9e-39	88.64	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 60..93 e-value: 7.3E-10 score: 38.1 coord: 3..60 e-value: 5.6E-18 score: 64.9
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 60..93
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 4..60
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 4..60
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 60..93
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 3..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M001041	Bhi06M001041	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding