Bhi06G000928 (gene) Wax gourd (B227) v1

Overview
NameBhi06G000928
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Locationchr6: 29158452 .. 29158775 (+)
RNA-Seq ExpressionBhi06G000928
SyntenyBhi06G000928
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACGTCAAGCAGTCCCGCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATACCGATACTGACAAGATCATTTTTTCAGGCAATGGGTATACTCGAAGAATTCCATTAGTTACGTATCAACGTTCTAACAAAAAGACTTGTATGCAGCAAAAATCCCAAGTTCACCAGCATGAAAAAAGGTCAAGTATAGGGGGACTCGATCGGTTCATCCAGATCAGCATGCCTTTCCCTAGTTTTAGAGGTAGGTAA

mRNA sequence

ATGCAACGTCAAGCAGTCCCGCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATACCGATACTGACAAGATCATTTTTTCAGGCAATGGGTATACTCGAAGAATTCCATTAGTTACGTATCAACGTTCTAACAAAAAGACTTGTATGCAGCAAAAATCCCAAGTTCACCAGCATGAAAAAAGGTCAAGTATAGGGGGACTCGATCGGTTCATCCAGATCAGCATGCCTTTCCCTAGTTTTAGAGGTAGGTAA

Coding sequence (CDS)

ATGCAACGTCAAGCAGTCCCGCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATACCGATACTGACAAGATCATTTTTTCAGGCAATGGGTATACTCGAAGAATTCCATTAGTTACGTATCAACGTTCTAACAAAAAGACTTGTATGCAGCAAAAATCCCAAGTTCACCAGCATGAAAAAAGGTCAAGTATAGGGGGACTCGATCGGTTCATCCAGATCAGCATGCCTTTCCCTAGTTTTAGAGGTAGGTAA

Protein sequence

MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVTYQRSNKKTCMQQKSQVHQHEKRSSIGGLDRFIQISMPFPSFRGR
Homology
[Close]
BLAST of Bhi06G000928 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 130.6 bits (327), Expect = 7.7e-31
Identity = 65/81 (80.25%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IP
Sbjct: 550 MQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVFSGNGDTLSIP 609

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           L+ YQRSNK TCM QK QV +
Sbjct: 610 LIMYQRSNKNTCMHQKPQVRR 630

[Close]
BLAST of Bhi06G000928 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-38
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCMQQKSQVHQ
Sbjct: 608 LVMYQRSNKNTCMQQKSQVHQ 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy Swiss-Prot
Match: Q14FG5 (DNA-directed RNA polymerase subunit beta OS=Populus alba OX=43335 GN=rpoB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-30
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPL+RSEKCIVGTGLERQVA DSGV AIAEH GKIIYTD DKII SGNGYT  IP
Sbjct: 548 MQRQAVPLARSEKCIVGTGLERQVALDSGVPAIAEHEGKIIYTDIDKIILSGNGYTVSIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCM QK+QV +
Sbjct: 608 LVMYQRSNKNTCMHQKTQVQR 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy Swiss-Prot
Match: A4GYQ0 (DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa OX=3694 GN=rpoB PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-30
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPL+RSEKCIVGTGLERQVA DSGV AIAEH GKIIYTD DKII SGNGYT  IP
Sbjct: 548 MQRQAVPLARSEKCIVGTGLERQVALDSGVPAIAEHEGKIIYTDIDKIILSGNGYTVSIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCM QK+QV +
Sbjct: 608 LVMYQRSNKNTCMHQKTQVQR 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy Swiss-Prot
Match: A4QL98 (DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum OX=59292 GN=rpoB PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.3e-30
Identity = 66/81 (81.48%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVA DSGV AIAEH GKI+YTDT+KIIFSGNG T  IP
Sbjct: 550 MQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHEGKILYTDTEKIIFSGNGDTLSIP 609

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           L+ YQRSNK TCM QK QV +
Sbjct: 610 LIMYQRSNKNTCMHQKPQVRR 630

[Close]
BLAST of Bhi06G000928 vs. ExPASy Swiss-Prot
Match: Q09FW9 (DNA-directed RNA polymerase subunit beta OS=Nandina domestica OX=41776 GN=rpoB PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.3e-30
Identity = 67/79 (84.81%), Postives = 68/79 (86.08%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQ A DSGV+AIAEH GKIIYTDTDKII SGNG T  IP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQAALDSGVSAIAEHEGKIIYTDTDKIILSGNGATLSIP 607

Query: 61  LVTYQRSNKKTCMQQKSQV 80
           LV YQRSNK TCM QK QV
Sbjct: 608 LVMYQRSNKNTCMHQKPQV 626

[Close]
BLAST of Bhi06G000928 vs. ExPASy TrEMBL
Match: A0A7T3QNR8 (RNA polymerase beta subunit OS=Benincasa hispida OX=102211 GN=rpoB PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.8e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LVTYQRSNK TCMQQKSQVHQ
Sbjct: 608 LVTYQRSNKNTCMQQKSQVHQ 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy TrEMBL
Match: A0A218KG28 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCMQQKSQVHQ
Sbjct: 608 LVMYQRSNKNTCMQQKSQVHQ 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy TrEMBL
Match: A0A1X9Q1B9 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCMQQKSQVHQ
Sbjct: 608 LVMYQRSNKNTCMQQKSQVHQ 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy TrEMBL
Match: A0A249RZI0 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCMQQKSQVHQ
Sbjct: 608 LVMYQRSNKNTCMQQKSQVHQ 628

[Close]
BLAST of Bhi06G000928 vs. ExPASy TrEMBL
Match: A0A1S4ETZ9 (DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 60
           MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP
Sbjct: 548 MQRQAVPLSRSEKCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIP 607

Query: 61  LVTYQRSNKKTCMQQKSQVHQ 82
           LV YQRSNK TCMQQKSQVHQ
Sbjct: 608 LVMYQRSNKNTCMQQKSQVHQ 628

The following BLAST results are available for this feature:
BLAST of Bhi06G000928 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00190.17.7e-3180.25RNA polymerase subunit beta [more]
BLAST of Bhi06G000928 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP13.7e-3897.53DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
Q14FG53.7e-3082.72DNA-directed RNA polymerase subunit beta OS=Populus alba OX=43335 GN=rpoB PE=3 S... [more]
A4GYQ03.7e-3082.72DNA-directed RNA polymerase subunit beta OS=Populus trichocarpa OX=3694 GN=rpoB ... [more]
A4QL988.3e-3081.48DNA-directed RNA polymerase subunit beta OS=Lepidium virginicum OX=59292 GN=rpoB... [more]
Q09FW98.3e-3084.81DNA-directed RNA polymerase subunit beta OS=Nandina domestica OX=41776 GN=rpoB P... [more]
BLAST of Bhi06G000928 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7T3QNR82.8e-3698.77RNA polymerase beta subunit OS=Benincasa hispida OX=102211 GN=rpoB PE=4 SV=1[more]
A0A218KG281.4e-3597.53DNA-directed RNA polymerase subunit beta OS=Cucumis sativus var. hardwickii OX=3... [more]
A0A1X9Q1B91.4e-3597.53DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3... [more]
A0A249RZI01.4e-3597.53DNA-directed RNA polymerase subunit beta OS=Cucumis melo var. cantalupensis OX=3... [more]
A0A1S4ETZ91.4e-3597.53DNA-directed RNA polymerase subunit beta OS=Cucumis melo OX=3656 GN=rpoB PE=3 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 30..85
e-value: 3.6E-9
score: 38.4
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000928Bhi06M000928mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding