Bhi06G000780 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000780
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Vat-like protein
Location	chr6: 23706562 .. 23706884 (-)
RNA-Seq Expression	Bhi06G000780
Synteny	Bhi06G000780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTTGAGATGGTTAACGGTGGCAAAATGTCATAAGTTGACCTATTTGCTAAGTCCATCAGTTGCTAGAAGCATGATGCAACTTATCGATTTGGATTTAGATGATTGCAAAAAGATGACTACTGTGGTTGCCAAAGGAGTGGAAGAAGAAAATGATGAAATTCTATTCAATATATTAGATTCTGTCGTTCTTAAAGATTTGTCCAAACTGACAAGTTTTCATTCTGAAAAATGTACCATCAAGATTCCATCCTTAGACAATATAGTTCTTAAAAATTGTCCCGACACGAGGGATTTCTCTCGTGGAATTGTAAGCACACCAC

mRNA sequence

GAACTTGAGATGGTTAACGGTGGCAAAATGTCATAAGTTGACCTATTTGCTAAGTCCATCAGTTGCTAGAAGCATGATGCAACTTATCGATTTGGATTTAGATGATTGCAAAAAGATGACTACTGTGGTTGCCAAAGGAGTGGAAGAAGAAAATGATGAAATTCTATTCAATATATTAGATTCTGTCGTTCTTAAAGATTTGTCCAAACTGACAAGTTTTCATTCTGAAAAATGTACCATCAAGATTCCATCCTTAGACAATATAGTTCTTAAAAATTGTCCCGACACGAGGGATTTCTCTCGTGGAATTGTAAGCACACCAC

Coding sequence (CDS)

GAACTTGAGATGGTTAACGGTGGCAAAATGTCATAAGTTGACCTATTTGCTAAGTCCATCAGTTGCTAGAAGCATGATGCAACTTATCGATTTGGATTTAGATGATTGCAAAAAGATGACTACTGTGGTTGCCAAAGGAGTGGAAGAAGAAAATGATGAAATTCTATTCAATATATTAGATTCTGTCGTTCTTAAAGATTTGTCCAAACTGACAAGTTTTCATTCTGAAAAATGTACCATCAAGATTCCATCCTTAGACAATATAGTTCTTAAAAATTGTCCCGACACGAGGGATTTCTCTCGTGGAATTGTAAGCACACCAC

Protein sequence

NLRWLTVAKCHKLTYLLSPSVARSMMQLIDLDLDDCKKMTTVVAKGVEEENDEILFNILDSVVLKDLSKLTSFHSEKCTIKIPSLDNIVLKNCPDTRDFSRGIVSTP

Homology

[Close]

BLAST of Bhi06G000780 vs. ExPASy TrEMBL
Match: A0A1S3B439 (probable disease resistance protein At4g27220 OS=Cucumis melo OX=3656 GN=LOC103485808 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 72/107 (67.29%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1    NLRWLTVAKCHKLTYLLSPSVARSMMQLIDLDLDDCKKMTTVVAKGVEEENDEILFNILD 60
            NL WLTV KCHK+TYLL+PSVAR+++QL  L L +CK+M TV+ +GVEEENDEILFN LD
Sbjct: 1242 NLTWLTVRKCHKMTYLLNPSVARTLVQLRLLVLGECKRMITVIVEGVEEENDEILFNRLD 1301

Query: 61   SVVLKDLSKLTSFHSEKCTIKIPSLDNIVLKNCPDTRDFSRGIVSTP 108
            S+ L+D+ KLTSFHS KCTI+ P LD + ++NCP+ RDFS GIVSTP
Sbjct: 1302 SIDLRDMLKLTSFHSGKCTIRFPCLDELAIENCPEMRDFSLGIVSTP 1348

[Close]

BLAST of Bhi06G000780 vs. ExPASy TrEMBL
Match: A0A5D3DG21 (Putative disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00880 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 72/107 (67.29%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   NLRWLTVAKCHKLTYLLSPSVARSMMQLIDLDLDDCKKMTTVVAKGVEEENDEILFNILD 60
           NL WLTV KCHK+TYLL+PSVAR+++QL  L L +CK+M TV+ +GVEEENDEILFN LD
Sbjct: 199 NLTWLTVRKCHKMTYLLNPSVARTLVQLRLLVLGECKRMITVIVEGVEEENDEILFNRLD 258

Query: 61  SVVLKDLSKLTSFHSEKCTIKIPSLDNIVLKNCPDTRDFSRGIVSTP 108
           S+ L+D+ KLTSFHS KCTI+ P LD + ++NCP+ RDFS GIVSTP
Sbjct: 259 SIDLRDMLKLTSFHSGKCTIRFPCLDELAIENCPEMRDFSLGIVSTP 305

[Close]

BLAST of Bhi06G000780 vs. ExPASy TrEMBL
Match: A0A5A7UB75 (Putative disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002020 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.7e-34
Identity = 72/107 (67.29%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   NLRWLTVAKCHKLTYLLSPSVARSMMQLIDLDLDDCKKMTTVVAKGVEEENDEILFNILD 60
           NL WLTV KCHK+TYLL+PSVAR+++QL  L L +CK+M TV+ +GVEEENDEILFN LD
Sbjct: 228 NLTWLTVRKCHKMTYLLNPSVARTLVQLRLLVLGECKRMITVIVEGVEEENDEILFNRLD 287

Query: 61  SVVLKDLSKLTSFHSEKCTIKIPSLDNIVLKNCPDTRDFSRGIVSTP 108
           S+ L+D+ KLTSFHS KCTI+ P LD + ++NCP+ RDFS GIVSTP
Sbjct: 288 SIDLRDMLKLTSFHSGKCTIRFPCLDELAIENCPEMRDFSLGIVSTP 334

[Close]

BLAST of Bhi06G000780 vs. ExPASy TrEMBL
Match: A0A6J1D9T1 (probable disease resistance protein At1g61300 OS=Momordica charantia OX=3673 GN=LOC111018197 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.1e-24
Identity = 61/106 (57.55%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 1   NLRWLTVAKCHKLTYLLSPSVARSMMQLIDLDLDDCKKMTTVVAKGVEEENDEILFNILD 60
           NL  L V KCH+LT+LL+PSVAR+++QL  L L DCK+MTTV+A+ VEE N+EI+F+ L 
Sbjct: 131 NLSKLEVDKCHRLTHLLNPSVARTLVQLKRLVLKDCKRMTTVIAEVVEEGNEEIVFSRLK 190

Query: 61  SVVLKDLSKLTSFHSEKCTIKIPSLDNIVLKNCPDTRDFSRGIVST 107
            + L+DLSKLTSFHS KC I+ P LD++ +  CP    FS GI+ST
Sbjct: 191 YLFLEDLSKLTSFHSGKCIIRFPYLDDVTIWTCPKMEVFSLGIIST 236

[Close]

BLAST of Bhi06G000780 vs. ExPASy TrEMBL
Match: A0A0A0LKS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G096940 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 1   NLRWLTVAKCHKLTYLLSPSVARSMMQLIDLDLDDCKKMTTVVAKGVEEENDEILFNILD 60
           NL  L V +CHKL YL++PSVAR+M QL  L++  CK+MT+V+AK   EENDEILFN L 
Sbjct: 299 NLVDLKVMECHKLIYLINPSVARTMGQLRQLEIRRCKRMTSVIAK---EENDEILFNKLI 358

Query: 61  SVVLKDLSKLTSFHSEKCTIKIPSLDNIVLKNCPDTRDFSRGIVSTP 108
            +V+ DL KL +FHS KCTI+ P L  I ++NCP+ +DF  GIVSTP
Sbjct: 359 YLVVVDLPKLLNFHSGKCTIRFPVLRRISVQNCPEMKDFCTGIVSTP 402

The following BLAST results are available for this feature:

BLAST of Bhi06G000780 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000780 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B439	5.7e-34	67.29	probable disease resistance protein At4g27220 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3DG21	5.7e-34	67.29	Putative disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UB75	5.7e-34	67.29	Putative disease resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1D9T1	4.1e-24	57.55	probable disease resistance protein At1g61300 OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0LKS9	2.0e-23	57.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G096940 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..107 e-value: 1.8E-6 score: 28.7
None	No IPR available	PANTHER	PTHR33463:SF100	RPP4C3	coord: 1..104
None	No IPR available	PANTHER	PTHR33463	FAMILY NOT NAMED	coord: 1..104
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000780	Bhi06M000780	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding