Bhi06G000730 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000730
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr6: 21287366 .. 21287560 (+)
RNA-Seq Expression	Bhi06G000730
Synteny	Bhi06G000730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATCAAGAGGACCTTAAAGTTATTGAAGTACGTTTGAGAAAGGCACAACAAGGAGTTATAGTGCAAATATCCCATACTGTGGAAGCATTAATAGATCGTTTGGATGGGTTGGAGACTGAGTATTGGGCAACGGAAAGAATATTGCCTCCTCCACCTCAACCTGCAGCAATTCACCATAATGAGGACTAA

mRNA sequence

ATGGACAATCAAGAGGACCTTAAAGTTATTGAAGTACGTTTGAGAAAGGCACAACAAGGAGTTATAGTGCAAATATCCCATACTGTGGAAGCATTAATAGATCGTTTGGATGGGTTGGAGACTGAGTATTGGGCAACGGAAAGAATATTGCCTCCTCCACCTCAACCTGCAGCAATTCACCATAATGAGGACTAA

Coding sequence (CDS)

ATGGACAATCAAGAGGACCTTAAAGTTATTGAAGTACGTTTGAGAAAGGCACAACAAGGAGTTATAGTGCAAATATCCCATACTGTGGAAGCATTAATAGATCGTTTGGATGGGTTGGAGACTGAGTATTGGGCAACGGAAAGAATATTGCCTCCTCCACCTCAACCTGCAGCAATTCACCATAATGAGGACTAA

Protein sequence

MDNQEDLKVIEVRLRKAQQGVIVQISHTVEALIDRLDGLETEYWATERILPPPPQPAAIHHNED

Homology

[Close]

BLAST of Bhi06G000730 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-05
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1  MDNQEDLKVIEVRLRKAQQGVIVQISHTVEALIDRLDGLETEYWATERILPPPPQPAAIH 60
          M+NQ D    EV+LR+AQQGVI ++   +EAL DRL+  E E  A ER+ PP   P  I+
Sbjct: 1  MENQND----EVQLREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLIN 60

Query: 61 HNED 65
          HN++
Sbjct: 61 HNDN 60

[Close]

BLAST of Bhi06G000730 vs. ExPASy TrEMBL
Match: A0A5A7TE32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004220 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-04
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1  MDNQEDLKVIEVRLRKAQQGVIVQISHTVEALIDRLDGLETEYWATERILPPP 54
          MDNQ D    EVRLR+AQQGVI  +   +EAL DR + LE E  A ER+ PPP
Sbjct: 1  MDNQND----EVRLREAQQGVIAPMISNMEALTDRFERLEIENRARERMSPPP 49

The following BLAST results are available for this feature:

BLAST of Bhi06G000730 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000730 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TK52	5.7e-05	48.44	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TE32	4.8e-04	56.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000730	Bhi06M000730	mRNA