Bhi06G000696 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000696
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protein Ycf2
Location	chr6: 19613506 .. 19613894 (-)
RNA-Seq Expression	Bhi06G000696
Synteny	Bhi06G000696

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCACCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCTTATTGGGCTAGGTCATTCTGGGACAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCGAAGTTCTTGCAGAGTAGAATCGTGCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGACTTTTTTCAAATAAGCCAATCCAAAATAGTATCTTTTAAGTCACTCTACAATCCTTTGATTCTATGTAAGGCATTTGAGAAGACACATATTTTGAAGCTTGAAGGAGATCAACAATGA

mRNA sequence

GGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCACCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCTTATTGGGCTAGGTCATTCTGGGACAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCGAAGTTCTTGCAGAGTAGAATCGTGCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGACTTTTTTCAAATAAGCCAATCCAAAATAGTATCTTTTAAGTCACTCTACAATCCTTTGATTCTATGTAAGGCATTTGAGAAGACACATATTTTGAAGCTTGAAGGAGATCAACAATGA

Coding sequence (CDS)

GGGAAGGAGAAGGAGTCCTCGACCCGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCACCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGATTTCCTTATTGGGCTAGGTCATTCTGGGACAAGCGGATCATTTATGATGAAGAGGATGAGCTTCAAGAGAATGATTCGAAGTTCTTGCAGAGTAGAATCGTGCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGACTTTTTTCAAATAAGCCAATCCAAAATAGTATCTTTTAAGTCACTCTACAATCCTTTGATTCTATGTAAGGCATTTGAGAAGACACATATTTTGAAGCTTGAAGGAGATCAACAATGA

Protein sequence

EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDEEDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQSKIVSFKSLYNPLILCKAFEKTHILKLEGDQQ

Homology

[Close]

BLAST of Bhi06G000696 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-41
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW P GFLFDCIERPNELGFPY A SF  KRIIYDE
Sbjct: 2070 EGEGVLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDE 2129

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            + ELQENDS+FLQS  +QYQ RDRSSKEQ FF+ISQ
Sbjct: 2130 KYELQENDSEFLQSGTMQYQRRDRSSKEQGFFRISQ 2165

[Close]

BLAST of Bhi06G000696 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-41
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW P GFLFDCIERPNELGFPY A SF  KRIIYDE
Sbjct: 2070 EGEGVLDPQQIEEDLFNHIVWAPRIWRPRGFLFDCIERPNELGFPYSAGSFRGKRIIYDE 2129

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            + ELQENDS+FLQS  +QYQ RDRSSKEQ FF+ISQ
Sbjct: 2130 KYELQENDSEFLQSGTMQYQRRDRSSKEQGFFRISQ 2165

[Close]

BLAST of Bhi06G000696 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-46
Identity = 86/96 (89.58%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPNELGFPYWARSF  KRIIYDE
Sbjct: 2074 EGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDE 2133

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            +DELQ NDS+FLQS  VQYQTRDRSSKEQ FF+ISQ
Sbjct: 2134 KDELQANDSEFLQSGTVQYQTRDRSSKEQGFFRISQ 2169

[Close]

BLAST of Bhi06G000696 vs. ExPASy Swiss-Prot
Match: Q0G9Q1 (Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-46
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEG LDPQQIEEDLFNHIVWAPRIWHPWG LFDCIERPNELGFPYW+RSF  KRI+YDE
Sbjct: 1851 EGEGALDPQQIEEDLFNHIVWAPRIWHPWGILFDCIERPNELGFPYWSRSFRGKRILYDE 1910

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  +QYQTRDRSSKEQ FF+ISQ
Sbjct: 1911 EDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQ 1946

[Close]

BLAST of Bhi06G000696 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-45
Identity = 86/96 (89.58%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPNELG PYWARSF  KRIIYDE
Sbjct: 1762 EGEGVLDPQQIEEDLFNHIVWAPRIWSPWGFLFDCIERPNELGVPYWARSFRGKRIIYDE 1821

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  VQYQTRDRSSKEQ FF I+Q
Sbjct: 1822 EDELQENDSEFLQSGTVQYQTRDRSSKEQGFFLINQ 1857

[Close]

BLAST of Bhi06G000696 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-45
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPN LGFPYWARSF  KRIIYDE
Sbjct: 2056 EGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNSLGFPYWARSFRGKRIIYDE 2115

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            ++ELQENDS+FLQS  +QYQTRDRSSKEQ FF+ISQ
Sbjct: 2116 KEELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQ 2151

[Close]

BLAST of Bhi06G000696 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-45
Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEG LDPQQIEEDLFNHIVWAPRIW+PWGFLFDCIERPNELGFPYWARSF  KR IYD+
Sbjct: 1891 EGEGALDPQQIEEDLFNHIVWAPRIWNPWGFLFDCIERPNELGFPYWARSFRGKRSIYDK 1950

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  +QYQTRDRSSKEQ FF+ISQ
Sbjct: 1951 EDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRISQ 1986

[Close]

BLAST of Bhi06G000696 vs. ExPASy TrEMBL
Match: A0A2S0STM0 (Protein Ycf2 OS=Griffonia simplicifolia OX=3850 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.7e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPNELGFPYWARSFW KRIIYDE
Sbjct: 2049 EGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFWGKRIIYDE 2108

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  +QYQTRDRSSKEQ FF+I+Q
Sbjct: 2109 EDELQENDSEFLQSGTMQYQTRDRSSKEQGFFRITQ 2144

[Close]

BLAST of Bhi06G000696 vs. ExPASy TrEMBL
Match: A0A291IAS5 (Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEGVLDPQQIEEDLFNHIVWAPRIW PWGFLFDCIERPNELGFPYWARSF  KRIIYDE
Sbjct: 2055 EGEGVLDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNELGFPYWARSFRGKRIIYDE 2114

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  VQYQTRDRSSKEQDFF+ISQ
Sbjct: 2115 EDELQENDSEFLQSGTVQYQTRDRSSKEQDFFRISQ 2150

[Close]

BLAST of Bhi06G000696 vs. ExPASy TrEMBL
Match: A0A411K5B4 (Protein Ycf2 OS=Rhabdodendron amazonicum OX=63102 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.1e-45
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEG LDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSF  KRIIYDE
Sbjct: 2025 EGEGALDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFRGKRIIYDE 2084

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  VQYQTRDRSSKEQ FF+ISQ
Sbjct: 2085 EDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQ 2120

[Close]

BLAST of Bhi06G000696 vs. ExPASy TrEMBL
Match: A0A411L7A1 (Protein Ycf2 OS=Rhabdodendron amazonicum OX=63102 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.1e-45
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEG LDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSF  KRIIYDE
Sbjct: 2025 EGEGALDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFRGKRIIYDE 2084

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  VQYQTRDRSSKEQ FF+ISQ
Sbjct: 2085 EDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQ 2120

[Close]

BLAST of Bhi06G000696 vs. ExPASy TrEMBL
Match: G0YEK9 (Protein Ycf2 OS=Rhabdodendron amazonicum OX=63102 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.1e-45
Identity = 88/96 (91.67%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1    EGEGVLDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFWDKRIIYDE 60
            EGEG LDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSF  KRIIYDE
Sbjct: 2064 EGEGALDPQQIEEDLFNHIVWAPRIWHPWGFLFDCIERPNELGFPYWARSFRGKRIIYDE 2123

Query: 61   EDELQENDSKFLQSRIVQYQTRDRSSKEQDFFQISQ 97
            EDELQENDS+FLQS  VQYQTRDRSSKEQ FF+ISQ
Sbjct: 2124 EDELQENDSEFLQSGTVQYQTRDRSSKEQGFFRISQ 2159

The following BLAST results are available for this feature:

BLAST of Bhi06G000696 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-41	84.38	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-41	84.38	Chloroplast Ycf2;ATPase, AAA type, core	[more]

BLAST of Bhi06G000696 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A978	5.8e-46	89.58	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q0G9Q1	5.8e-46	87.50	Protein Ycf2 OS=Daucus carota OX=4039 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	1.7e-45	89.58	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	2.9e-45	87.50	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
P08973	2.9e-45	87.50	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]

BLAST of Bhi06G000696 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2S0STM0	1.7e-45	90.63	Protein Ycf2 OS=Griffonia simplicifolia OX=3850 GN=ycf2 PE=3 SV=1	[more]
A0A291IAS5	2.3e-45	92.71	Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1	[more]
A0A411K5B4	5.1e-45	91.67	Protein Ycf2 OS=Rhabdodendron amazonicum OX=63102 GN=ycf2 PE=3 SV=1	[more]
A0A411L7A1	5.1e-45	91.67	Protein Ycf2 OS=Rhabdodendron amazonicum OX=63102 GN=ycf2 PE=3 SV=1	[more]
G0YEK9	5.1e-45	91.67	Protein Ycf2 OS=Rhabdodendron amazonicum OX=63102 GN=ycf2 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 1..96
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..96
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000696	Bhi06M000696	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity