Bhi06G000616 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000616
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	F-box protein
Location	chr6: 16571524 .. 16572366 (-)
RNA-Seq Expression	Bhi06G000616
Synteny	Bhi06G000616

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGATTTCAGACAAGGACCTGTATGCAACAACTTGAAGATTAGTGACTTTGATCCATGCCTCTTAACTATAAAAAATGCTAATACTCTTACATTATGTAGACGGAATTATGAGGTAAATTTTTGCTTTATTTGTATGATATTTCTTTCATCATATAGTATAAAAATTAAAAATGAAGACTGTTATTTGTGCTGTTGCAGGCACTAATATGGCCTTCTTTAGCTTCTTTACAAGGGAACTTCATATTTTATAATCTTAAAGAGCTCTGGTGGATTGATTATTCTTCAAATGAAGGATACAATAGTAATGCATTGGTCACCTTCCTCCAGATGTGTCCTGCCTTAGAGCGACTTTTCGTCACGGTACATCTCGTCTCTTTCGCTTCTCTTCACTTTCTTGATGATACAATCTGCAGCTATGACAATTGACAAAACCAATTCTAAAAGCTTCATGAACTTATTTACATTGATGTCAAACTCTATACAGATTGATCCTAAAAGCTATGGCACACCGAGCACGAAGACGTACTCAAAGAACGTCTGGAGGAAAGCGAAATTGGAACATCTAAAACTTGTACGTTTGAAGGGGTTTATGGATCAGAATGAAGAAATGTCATTGATTAGGCTGATAAAAGAGCTAGTTTCTGAGAATCCATTGTTCATATCAGTAATTGATCAGAACAACTTGGAGAGTTTGGTTGAAATTCCTTCCAATCAGTTCAAATCACAGAGTTTTCTCAACATCAAAGCAGAGAAACATGAATCAAATGGAAGAAAAACTTTCTCTAAGTTGGATGATGCAGAACAAACATGGCCTAAACATCCTCACATGAATCTTTAG

mRNA sequence

ATGCTTGATTTCAGACAAGGACCTGTATGCAACAACTTGAAGATTAGTGACTTTGATCCATGCCTCTTAACTATAAAAAATGCTAATACTCTTACATTATGTAGACGGAATTATGAGGCACTAATATGGCCTTCTTTAGCTTCTTTACAAGGGAACTTCATATTTTATAATCTTAAAGAGCTCTGGTGGATTGATTATTCTTCAAATGAAGGATACAATAGTAATGCATTGGTCACCTTCCTCCAGATGTGTCCTGCCTTAGAGCGACTTTTCGTCACGATTGATCCTAAAAGCTATGGCACACCGAGCACGAAGACGTACTCAAAGAACGTCTGGAGGAAAGCGAAATTGGAACATCTAAAACTTGTACGTTTGAAGGGGTTTATGGATCAGAATGAAGAAATGTCATTGATTAGGCTGATAAAAGAGCTAGTTTCTGAGAATCCATTGTTCATATCAGTAATTGATCAGAACAACTTGGAGAGTTTGGTTGAAATTCCTTCCAATCAGTTCAAATCACAGAGTTTTCTCAACATCAAAGCAGAGAAACATGAATCAAATGGAAGAAAAACTTTCTCTAAGTTGGATGATGCAGAACAAACATGGCCTAAACATCCTCACATGAATCTTTAG

Coding sequence (CDS)

ATGCTTGATTTCAGACAAGGACCTGTATGCAACAACTTGAAGATTAGTGACTTTGATCCATGCCTCTTAACTATAAAAAATGCTAATACTCTTACATTATGTAGACGGAATTATGAGGCACTAATATGGCCTTCTTTAGCTTCTTTACAAGGGAACTTCATATTTTATAATCTTAAAGAGCTCTGGTGGATTGATTATTCTTCAAATGAAGGATACAATAGTAATGCATTGGTCACCTTCCTCCAGATGTGTCCTGCCTTAGAGCGACTTTTCGTCACGATTGATCCTAAAAGCTATGGCACACCGAGCACGAAGACGTACTCAAAGAACGTCTGGAGGAAAGCGAAATTGGAACATCTAAAACTTGTACGTTTGAAGGGGTTTATGGATCAGAATGAAGAAATGTCATTGATTAGGCTGATAAAAGAGCTAGTTTCTGAGAATCCATTGTTCATATCAGTAATTGATCAGAACAACTTGGAGAGTTTGGTTGAAATTCCTTCCAATCAGTTCAAATCACAGAGTTTTCTCAACATCAAAGCAGAGAAACATGAATCAAATGGAAGAAAAACTTTCTCTAAGTTGGATGATGCAGAACAAACATGGCCTAAACATCCTCACATGAATCTTTAG

Protein sequence

MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKELWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHLKLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIKAEKHESNGRKTFSKLDDAEQTWPKHPHMNL

Homology

[Close]

BLAST of Bhi06G000616 vs. TAIR 10
Match: AT2G39490.1 (F-box family protein )

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           + D  QGP   N  + D  P  LTIKN+ +LTLCR  +E +I PS++S   +F FY L+E
Sbjct: 233 VFDVTQGPSYYNNAL-DIGPLSLTIKNSQSLTLCRWMFEEVIKPSISSSWRSFQFYKLQE 292

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNV-WRKAKLEH 120
           L WID S N+    N+L++FL++CP++ERLF+TID  +Y   S +  S N    +  L  
Sbjct: 293 LRWIDNSMNQ-EQINSLISFLKLCPSIERLFITIDSNTYS--SNEEVSVNADHARVVLRD 352

Query: 121 LKLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFI 153
           L++V+L+GF  + ++  LI  ++E+VS + PL +
Sbjct: 353 LEVVKLEGFKSEEDKNQLIFALQEIVSIDQPLLV 382

[Close]

BLAST of Bhi06G000616 vs. ExPASy Swiss-Prot
Match: Q5S4V7 (F-box protein At2g39490 OS=Arabidopsis thaliana OX=3702 GN=At2g39490 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-22
Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           + D  QGP   N  + D  P  LTIKN+ +LTLCR  +E +I PS++S   +F FY L+E
Sbjct: 233 VFDVTQGPSYYNNAL-DIGPLSLTIKNSQSLTLCRWMFEEVIKPSISSSWRSFQFYKLQE 292

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNV-WRKAKLEH 120
           L WID S N+    N+L++FL++CP++ERLF+TID  +Y   S +  S N    +  L  
Sbjct: 293 LRWIDNSMNQ-EQINSLISFLKLCPSIERLFITIDSNTYS--SNEEVSVNADHARVVLRD 352

Query: 121 LKLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFI 153
           L++V+L+GF  + ++  LI  ++E+VS + PL +
Sbjct: 353 LEVVKLEGFKSEEDKNQLIFALQEIVSIDQPLLV 382

[Close]

BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A5D3C3A4 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002850 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.3e-92
Identity = 167/211 (79.15%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           MLDFRQGP CNN KISDFDPCLLTIKNANTLTLCR NYE LIWPSL SLQGNFIFYN+KE
Sbjct: 223 MLDFRQGPGCNNFKISDFDPCLLTIKNANTLTLCRWNYEVLIWPSLTSLQGNFIFYNIKE 282

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120
           LWWID +SN GYN+NALV+FLQMCP LERLF+TIDPKSY TPS +TY+KNV RK KLEHL
Sbjct: 283 LWWIDSNSNGGYNNNALVSFLQMCPTLERLFITIDPKSYDTPSKETYTKNVRRKTKLEHL 342

Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFISVIDQNNLESLVEIPSNQFKSQSFLNI 180
           KLVRLKGF+DQNEEM+LIRLIKE+V+ + PLF +VID+N LESL E+P NQ KSQSF++ 
Sbjct: 343 KLVRLKGFVDQNEEMALIRLIKEVVAVDPPLFSTVIDKNKLESLAEVPYNQIKSQSFIDF 402

Query: 181 KAEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211
           K EK+ S+G+  FSKLDDAEQTWPKHPHMNL
Sbjct: 403 KTEKNGSDGKNLFSKLDDAEQTWPKHPHMNL 433

[Close]

BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A1S3CJE5 (F-box protein At2g39490 OS=Cucumis melo OX=3656 GN=LOC103501647 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 9.1e-92
Identity = 166/211 (78.67%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           MLDFRQGP CNN KISDFDPCLLTIKNANTLTLCR NYE LIWPSL SLQGNFIFYN+KE
Sbjct: 223 MLDFRQGPGCNNFKISDFDPCLLTIKNANTLTLCRWNYEVLIWPSLTSLQGNFIFYNIKE 282

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120
           LWWID +SN GYN+NALV+FLQMCP LERLF+TIDPKSY TPS +TY+KNV RK KLEHL
Sbjct: 283 LWWIDSNSNGGYNNNALVSFLQMCPTLERLFITIDPKSYDTPSKETYTKNVRRKTKLEHL 342

Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVS-ENPLFISVIDQNNLESLVEIPSNQFKSQSFLNI 180
           KLV LKGF+DQNEEM+LIRLIKE+V+ + PLF++VID+N LESL E+P NQ KSQSF++ 
Sbjct: 343 KLVSLKGFVDQNEEMALIRLIKEVVAVDPPLFLTVIDKNKLESLAEVPYNQIKSQSFIDF 402

Query: 181 KAEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211
           K EK+ S+G+  FSKLDDAEQTWPKHPHMNL
Sbjct: 403 KTEKNGSDGKNLFSKLDDAEQTWPKHPHMNL 433

[Close]

BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A0A0KNP4 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505800 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.0e-90
Identity = 166/210 (79.05%), Postives = 182/210 (86.67%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           MLD RQGP CNNLKISDFDPCLLTIKNANTLTLCR NYE LI PSLASLQGNFIFYN+KE
Sbjct: 223 MLDIRQGPGCNNLKISDFDPCLLTIKNANTLTLCRWNYEVLIRPSLASLQGNFIFYNIKE 282

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120
           LWWI  +SN GYN+NAL+TFLQ+CP LERLFVTIDPK YGTPS +TY  NV RK KLEHL
Sbjct: 283 LWWIGSNSNGGYNNNALLTFLQICPTLERLFVTIDPKGYGTPSKETYMNNVRRKTKLEHL 342

Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIK 180
           +LV LKGF+DQNEEM LIRLIKELV+ NP+F+SVID+N LESL  +P NQ KSQSF+NIK
Sbjct: 343 QLVSLKGFVDQNEEMELIRLIKELVAVNPVFMSVIDKNKLESLAGVPYNQIKSQSFINIK 402

Query: 181 AEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211
            EK+ SN +  FSKLDDAEQTWPKHPHMNL
Sbjct: 403 TEKNGSNEKYLFSKLDDAEQTWPKHPHMNL 432

[Close]

BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A6J1BZC3 (F-box protein At2g39490 OS=Momordica charantia OX=3673 GN=LOC111006079 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.1e-84
Identity = 163/211 (77.25%), Postives = 181/211 (85.78%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           MLDFRQGP CNNLKISDFDP LLTIKNA  LTLC+ N EALIWPSL+SLQGNFIFYNLKE
Sbjct: 224 MLDFRQGPGCNNLKISDFDPTLLTIKNATILTLCKSNDEALIWPSLSSLQGNFIFYNLKE 283

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120
           LWWIDY SNEGYNSNALVTFLQMCP LERLFVTIDPKSY TPS  TYSKNV R++K +HL
Sbjct: 284 LWWIDY-SNEGYNSNALVTFLQMCPTLERLFVTIDPKSYCTPSNATYSKNVLRQSKSKHL 343

Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIK 180
           KLV LKGF D NEE+SLIR IKELVS +PLF+S  +QN+LESLV+IPSN  KS+SF++I+
Sbjct: 344 KLVILKGFTDHNEEISLIRQIKELVSVDPLFVSTNEQNSLESLVKIPSNHLKSESFISIR 403

Query: 181 AEKHESNGRKTFSKL-DDAEQTWPKHPHMNL 211
           A  HES+   +FSKL DD +QT PKHPHMNL
Sbjct: 404 AAPHESDVSNSFSKLKDDVDQTTPKHPHMNL 433

[Close]

BLAST of Bhi06G000616 vs. ExPASy TrEMBL
Match: A0A6J1FHP3 (F-box protein At2g39490 OS=Cucurbita moschata OX=3662 GN=LOC111445442 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.0e-75
Identity = 148/210 (70.48%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 1   MLDFRQGPVCNNLKISDFDPCLLTIKNANTLTLCRRNYEALIWPSLASLQGNFIFYNLKE 60
           MLDFRQG  CNNLKIS+FDPCLLTIKNA TLTLC  NYEALIWPS+ASLQGNFIFY+LKE
Sbjct: 224 MLDFRQGLGCNNLKISEFDPCLLTIKNAATLTLCGWNYEALIWPSIASLQGNFIFYHLKE 283

Query: 61  LWWIDYSSNEGYNSNALVTFLQMCPALERLFVTIDPKSYGTPSTKTYSKNVWRKAKLEHL 120
           LWWI Y SNE +NSNAL++FLQMCPALERLFVTIDPKSY TPS   YSKNVWR+AK EHL
Sbjct: 284 LWWIGY-SNEEHNSNALLSFLQMCPALERLFVTIDPKSYSTPSKPMYSKNVWRRAKSEHL 343

Query: 121 KLVRLKGFMDQNEEMSLIRLIKELVSENPLFISVIDQNNLESLVEIPSNQFKSQSFLNIK 180
           KLV LKGF D+NEEMSLI++IKE+V  +P+FIS ID +                     K
Sbjct: 344 KLVSLKGFTDENEEMSLIKVIKEVVCVSPVFISAIDHST--------------------K 403

Query: 181 AEKHESNGRKTFSKLDDAEQTWPKHPHMNL 211
           AEKH SNG  + SKLDD +Q WPKHPHMNL
Sbjct: 404 AEKHGSNGGNSSSKLDDEQQIWPKHPHMNL 412

The following BLAST results are available for this feature:

BLAST of Bhi06G000616 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39490.1	2.3e-23	40.91	F-box family protein	[more]

BLAST of Bhi06G000616 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5S4V7	3.3e-22	40.91	F-box protein At2g39490 OS=Arabidopsis thaliana OX=3702 GN=At2g39490 PE=2 SV=1	[more]

BLAST of Bhi06G000616 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3A4	5.3e-92	79.15	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002850 ...	[more]
A0A1S3CJE5	9.1e-92	78.67	F-box protein At2g39490 OS=Cucumis melo OX=3656 GN=LOC103501647 PE=4 SV=1	[more]
A0A0A0KNP4	5.0e-90	79.05	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505800 PE=4 ...	[more]
A0A6J1BZC3	3.1e-84	77.25	F-box protein At2g39490 OS=Momordica charantia OX=3673 GN=LOC111006079 PE=4 SV=1	[more]
A0A6J1FHP3	2.0e-75	70.48	F-box protein At2g39490 OS=Cucurbita moschata OX=3662 GN=LOC111445442 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..210
None	No IPR available	PANTHER	PTHR31639:SF32	F-BOX PLANT-LIKE PROTEIN	coord: 7..207
None	No IPR available	PANTHER	PTHR31639	F-BOX PROTEIN-LIKE	coord: 7..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000616	Bhi06M000616	mRNA