Bhi06G000556 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000556
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr6: 14959264 .. 14960881 (-)
RNA-Seq Expression	Bhi06G000556
Synteny	Bhi06G000556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCAATCTCTCTACTGCAAGTGCTTTTAGTCCCCTTCCTTCCCTTCTTCTTCCTCCACTTCACTCTCTCAATCTCTTCTCACCTTCTTTCTCACTGTTTTTTCAATGGCTTCCAATACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCCTCTAAGTCTAAATTCGCTGCGGCTGTCCCCATTTCCGGCGTTGCCGTTAATGCATCGTCCAGATTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCCCCCTACCTCGACGGCTCATCCCCTGGGTATTGAATTTTGAAATGCCTTTTGTTCGTTTAAACCGGTGGGGTTTGTTAATGTAGGATGATGTTTGCTATCTAGGTGTTTGATGAAATGTCCTGATACTCTTTTTGGGTGCTTTGATTTAACCTTGACTCGATGAAATCGTTATGTATGTGAATCAAAAGAGAAATCATGTCAAACTGGCATTAGTTTTTGTCATGGTTAATGATGATTAATTTAGCATTATTAAAGCTTTAGTTTATGGCTACGTGATGACTTAGAATAGATTAGATGTTTGAGATCTGTGGTCATGTTCAACAGTGATTTTGGTTTCGACCCACTTCGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTGTAAGTATCGCAAATTCAGTTGCTTGATTCTGAGATGATGGGTCTTTTCTTTTTCATTTTCCAATGCTGTTCCTTCTGTTTTTTCAGCCAGGGATTTTGGTACCTGAGGCTTTGGGTTTAGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACATACTTGGGGCAACCAGTTCCATGGGGAACTTTGCCCACTATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGTAGCATGGAGAAAGACCCCGAGAAGAAGAAATACCCTGGAGGTGCTTTCGACCCATTAGGCTACTCAAAAGACCCTGAAAAATTGAAGGAATACAAAGTCAAAGAGATAAAAAACGGTAACTGATTTAGGCTTTGAATGCTTTTGGAACTGTTAAACAAATTTTCCTATAAACCAGATTTAGGCTTTGAGGCTACTGTATTCCTTATTGCTTTTTACTCAAATGGTTAGAATGAAGAAGGGGAAAAACATTTTATGCAAATTACCAATTACTTATGGTTTGTAGGTCGGTTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGATATTATCATCCCCAGATCGATTTCGCCTTGAATTTTGTACTAAATCATACCAATTGTAATTAAATTTGTGTGTATTGCATCTGAACTCAAGGCTTTCCTCTCTTTATGGCTTTGAATGTGCTCTATAACTTGATTTTGACCTTCATTTTAGTGCATGGAGTTACCATTGGAGGAAGGAAAAACAAAAGGATTATATTACAAATTTAATCGAAGTTTATATCTATTTGGTTCTTCAATAAATATATATATA

mRNA sequence

CCCCAATCTCTCTACTGCAAGTGCTTTTAGTCCCCTTCCTTCCCTTCTTCTTCCTCCACTTCACTCTCTCAATCTCTTCTCACCTTCTTTCTCACTGTTTTTTCAATGGCTTCCAATACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCCTCTAAGTCTAAATTCGCTGCGGCTGTCCCCATTTCCGGCGTTGCCGTTAATGCATCGTCCAGATTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCCCCCTACCTCGACGGCTCATCCCCTGGTGATTTTGGTTTCGACCCACTTCGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGTTTAGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACATACTTGGGGCAACCAGTTCCATGGGGAACTTTGCCCACTATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGTAGCATGGAGAAAGACCCCGAGAAGAAGAAATACCCTGGAGGTGCTTTCGACCCATTAGGCTACTCAAAAGACCCTGAAAAATTGAAGGAATACAAAGTCAAAGAGATAAAAAACGGTCGGTTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGATATTATCATCCCCAGATCGATTTCGCCTTGAATTTTGTACTAAATCATACCAATTGTAATTAAATTTGTGTGTATTGCATCTGAACTCAAGGCTTTCCTCTCTTTATGGCTTTGAATGTGCTCTATAACTTGATTTTGACCTTCATTTTAGTGCATGGAGTTACCATTGGAGGAAGGAAAAACAAAAGGATTATATTACAAATTTAATCGAAGTTTATATCTATTTGGTTCTTCAATAAATATATATATA

Coding sequence (CDS)

ATGGCTTCCAATACCTTGATGAGCTGTGGCATTGCCACCACCGCCTTCCCTTCAGTCCTTTCCTCCTCTAAGTCTAAATTCGCTGCGGCTGTCCCCATTTCCGGCGTTGCCGTTAATGCATCGTCCAGATTTTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCCCCCTACCTCGACGGCTCATCCCCTGGTGATTTTGGTTTCGACCCACTTCGGCTGGGAGAAGTGCCAGAGAACCTCGAGAGATTCAAGGAGTCTGAGCTAATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCTGAGGCTTTGGGTTTAGGCAACTGGGTGAAAGCTCAAGAATGGGCAGCAATTCCAGGAGGCCAAGCTACATACTTGGGGCAACCAGTTCCATGGGGAACTTTGCCCACTATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAGCGTAGCATGGAGAAAGACCCCGAGAAGAAGAAATACCCTGGAGGTGCTTTCGACCCATTAGGCTACTCAAAAGACCCTGAAAAATTGAAGGAATACAAAGTCAAAGAGATAAAAAACGGTCGGTTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCAGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGATATTATCATCCCCAGATCGATTTCGCCTTGA

Protein sequence

MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP

Homology

[Close]

BLAST of Bhi06G000556 vs. TAIR 10
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 419.9 bits (1078), Expect = 1.5e-117
Identity = 205/242 (84.71%), Postives = 218/242 (90.08%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGS+PGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]

BLAST of Bhi06G000556 vs. TAIR 10
Match: AT3G54890.2 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 334.7 bits (857), Expect = 6.2e-92
Identity = 173/242 (71.49%), Postives = 184/242 (76.03%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGS+PGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAF                          
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAF-------------------------- 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
                   E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 --------ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 205

Query: 241 IP 242
           IP
Sbjct: 241 IP 205

[Close]

BLAST of Bhi06G000556 vs. TAIR 10
Match: AT3G54890.4 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 326.6 bits (836), Expect = 1.7e-89
Identity = 162/199 (81.41%), Postives = 175/199 (87.94%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGS+PGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGR 199
           SKDP+KL+E KVKEIKNG+
Sbjct: 181 SKDPKKLEELKVKEIKNGK 196

[Close]

BLAST of Bhi06G000556 vs. TAIR 10
Match: AT3G54890.3 (photosystem I light harvesting complex gene 1 )

HSP 1 Score: 235.3 bits (599), Expect = 5.1e-62
Identity = 118/151 (78.15%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGS+PGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLA 151
           WAA+PGGQATYLG PVPWGTLPTIL IEFLA
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLA 148

[Close]

BLAST of Bhi06G000556 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 159.5 bits (402), Expect = 3.5e-39
Identity = 95/232 (40.95%), Postives = 125/232 (53.88%), Query Frame = 0


Query: 50  WMPGQPRPPYLDGSSPGDFGFDPLRLGEVPE----------------------------- 109
           W PG   P +LDGS  GD+GFDP  LG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 110 --------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGG 169
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   + G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 170 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEK 229
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DPEK
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 230 LKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 238
             + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]

BLAST of Bhi06G000556 vs. ExPASy Swiss-Prot
Match: P12360 (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB6A PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 5.2e-120
Identity = 211/246 (85.77%), Postives = 221/246 (89.84%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGI     PS LSS+KSKFAAA+P+   A N  SRFSMSA+WMPGQPRP YL
Sbjct: 1   MASNTLMSCGIPAVC-PSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYL 60

Query: 61  DGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS+PGDFGFD L LGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AAIPGGQATYLGQPVPWGTLPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDP K +E KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGD+II
Sbjct: 181 KDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 240

Query: 241 PRSISP 247
           P+ I P
Sbjct: 241 PKGIFP 245

[Close]

BLAST of Bhi06G000556 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 2.1e-116
Identity = 205/242 (84.71%), Postives = 218/242 (90.08%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKF-AAAVPISGVAVNASSRFSMSAEWMPGQPRPPY 60
           MASN+LMSCGIA   +PS+LSSSKSKF +A VP+         R  M+A WMPG+PRP Y
Sbjct: 1   MASNSLMSCGIA-AVYPSLLSSSKSKFVSAGVPLPN--AGNVGRIRMAAHWMPGEPRPAY 60

Query: 61  LDGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQE 120
           LDGS+PGDFGFDPL LGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQE
Sbjct: 61  LDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQE 120

Query: 121 WAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180
           WAA+PGGQATYLG PVPWGTLPTIL IEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY
Sbjct: 121 WAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGY 180

Query: 181 SKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDII 240
           SKDP+KL+E KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+
Sbjct: 181 SKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 239

Query: 241 IP 242
           IP
Sbjct: 241 IP 239

[Close]

BLAST of Bhi06G000556 vs. ExPASy Swiss-Prot
Match: Q9SDM1 (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 4.7e-105
Identity = 183/243 (75.31%), Postives = 202/243 (83.13%), Query Frame = 0


Query: 2   ASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLD 61
           +S+ L SC  +    PS+L+ S     + +P    A   S R +MSAEW PGQPRP +LD
Sbjct: 3   SSSGLRSC--SAVGVPSLLAPSSRSGRSGLPFCAYA-TTSGRVTMSAEWFPGQPRPAHLD 62

Query: 62  GSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 121
           GSSPGDFGFDPL L  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWA
Sbjct: 63  GSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWA 122

Query: 122 AIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 181
           A+P GQATYLG PVPWG LPTIL IEFLAIAF E QR+MEKDPEKKKYPGGAFDPLG+SK
Sbjct: 123 ALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSK 182

Query: 182 DPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 241
           DP K +E K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 183 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 242

Query: 242 RSI 245
           R+I
Sbjct: 243 RNI 242

[Close]

BLAST of Bhi06G000556 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-38
Identity = 95/232 (40.95%), Postives = 125/232 (53.88%), Query Frame = 0


Query: 50  WMPGQPRPPYLDGSSPGDFGFDPLRLGEVPE----------------------------- 109
           W PG   P +LDGS  GD+GFDP  LG+  E                             
Sbjct: 58  WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAA 117

Query: 110 --------------NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGG 169
                          ++RF+E ELIH RWAMLA  G L  E L    W  A +   + G 
Sbjct: 118 DAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG- 177

Query: 170 QATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEK 229
            ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DPEK
Sbjct: 178 -SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 237

Query: 230 LKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 238
             + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct: 238 TAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285

[Close]

BLAST of Bhi06G000556 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.2e-37
Identity = 105/282 (37.23%), Postives = 140/282 (49.65%), Query Frame = 0


Query: 3   SNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVN---ASSRFSMSAEWMPGQPRPPY 62
           S    +  I  T   S +SS+ S+F A         +   A +  S    W PG   P Y
Sbjct: 5   STAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEY 64

Query: 63  LDGSSPGDFGFDPLRLGEVPE--------------------------------------- 122
           LDGS  GD+GFDP  LG+  E                                       
Sbjct: 65  LDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPY 124

Query: 123 ----NLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGGQATYLGQPVP 182
                L+RF+E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P
Sbjct: 125 SEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLP 184

Query: 183 WGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPEKLKEYKVKEIK 238
           + ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K  + ++ EIK
Sbjct: 185 F-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIK 244

[Close]

BLAST of Bhi06G000556 vs. ExPASy TrEMBL
Match: A0A5A7TXV7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001080 PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.6e-138
Identity = 242/246 (98.37%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMS+EWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS+PGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSISP 247
           PR+ISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Bhi06G000556 vs. ExPASy TrEMBL
Match: A0A1S3BYE0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494548 PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.6e-138
Identity = 242/246 (98.37%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMS+EWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSSEWMPGQPRPPYL 60

Query: 61  DGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS+PGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSISP 247
           PR+ISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Bhi06G000556 vs. ExPASy TrEMBL
Match: A0A5D3BC57 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001420 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 5.8e-138
Identity = 242/246 (98.37%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMS EWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSFEWMPGQPRPPYL 60

Query: 61  DGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS+PGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSISP 247
           PR+ISP
Sbjct: 241 PRTISP 246

[Close]

BLAST of Bhi06G000556 vs. ExPASy TrEMBL
Match: A0A6J1BW39 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006054 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 9.8e-138
Identity = 241/246 (97.97%), Postives = 244/246 (99.19%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGV  NASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVGANASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS+PGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSISP 247
           PR+ISP
Sbjct: 241 PRNISP 246

[Close]

BLAST of Bhi06G000556 vs. ExPASy TrEMBL
Match: A0A0A0KNM4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 6.4e-137
Identity = 240/246 (97.56%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60
           MASNTLMSCGIATTAFPSVLSSSKSKFA  VPISGVAVNASSRFSMSAEWMPGQPRPPYL
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSSPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS+PGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240
           KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRSISP 247
           PR+ISP
Sbjct: 241 PRTISP 246

The following BLAST results are available for this feature:

BLAST of Bhi06G000556 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54890.1	1.5e-117	84.71	photosystem I light harvesting complex gene 1	[more]
AT3G54890.2	6.2e-92	71.49	photosystem I light harvesting complex gene 1	[more]
AT3G54890.4	1.7e-89	81.41	photosystem I light harvesting complex gene 1	[more]
AT3G54890.3	5.1e-62	78.15	photosystem I light harvesting complex gene 1	[more]
AT5G01530.1	3.5e-39	40.95	light harvesting complex photosystem II	[more]

BLAST of Bhi06G000556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12360	5.2e-120	85.77	Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
Q01667	2.1e-116	84.71	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SDM1	4.7e-105	75.31	Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare OX=4513 ...	[more]
Q07473	5.0e-38	40.95	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	4.2e-37	37.23	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of Bhi06G000556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXV7	2.6e-138	98.37	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BYE0	2.6e-138	98.37	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3BC57	5.8e-138	98.37	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1BW39	9.8e-138	97.97	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0KNM4	6.4e-137	97.56	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 51..237 e-value: 4.8E-80 score: 269.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 57..211 e-value: 1.1E-46 score: 159.3
None	No IPR available	PANTHER	PTHR21649:SF89	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 21..237
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 40..240
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 21..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000556	Bhi06M000556	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding