Bhi06G000457 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000457
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	chr6: 12312171 .. 12312629 (-)
RNA-Seq Expression	Bhi06G000457
Synteny	Bhi06G000457

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGCGGGACCATCTTCTCCAATCTCAGAGAAGGTTGGTTCGTGGCACCAGATCTCAACGTCGAAGGACAAGGTAGACCGACTCAACAACGGAATCACCTGGATCAACCAAATGGTGAAAGGAAACAGAAGGTGAAATAAGTTTGTAAGGCCTCGTTAGCCTGGGCCTCAACGTCGAAGGACAAGGTAGACCGACCATACTTTTGACAGTTGGGGATCTCTTCCTGAGGGTGCCTTTTTTCAGAAAGCCCATTTGTGTCAAGACTGGTGGAGGTCTTGTTGAGCGCATGTTTTTCATATCAATCAAGCGGGTTTCGTTTCATTTTCCGGAAAGCCTGTCATACTATTCCACTTTAGCTAAGCTAATGATGAAACAGGATCTGGATTTGTCTGCAGATGATGATGATGTCCACTCCTGGCTCGATGCACTTAACGAAAGGGAACTCTCACGATGA

mRNA sequence

ATGAGGAAGCGGGACCATCTTCTCCAATCTCAGAGAAGGTTGGTTCGTGGCACCAGATCTCAACGTCGAAGGACAAGAAAGCCCATTTGTGTCAAGACTGGTGGAGGTCTTGTTGAGCGCATGTTTTTCATATCAATCAAGCGGGTTTCGTTTCATTTTCCGGAAAGCCTGTCATACTATTCCACTTTAGCTAAGCTAATGATGAAACAGGATCTGGATTTGTCTGCAGATGATGATGATGTCCACTCCTGGCTCGATGCACTTAACGAAAGGGAACTCTCACGATGA

Coding sequence (CDS)

ATGAGGAAGCGGGACCATCTTCTCCAATCTCAGAGAAGGTTGGTTCGTGGCACCAGATCTCAACGTCGAAGGACAAGAAAGCCCATTTGTGTCAAGACTGGTGGAGGTCTTGTTGAGCGCATGTTTTTCATATCAATCAAGCGGGTTTCGTTTCATTTTCCGGAAAGCCTGTCATACTATTCCACTTTAGCTAAGCTAATGATGAAACAGGATCTGGATTTGTCTGCAGATGATGATGATGTCCACTCCTGGCTCGATGCACTTAACGAAAGGGAACTCTCACGATGA

Protein sequence

MRKRDHLLQSQRRLVRGTRSQRRRTRKPICVKTGGGLVERMFFISIKRVSFHFPESLSYYSTLAKLMMKQDLDLSADDDDVHSWLDALNERELSR

Homology

[Close]

BLAST of Bhi06G000457 vs. ExPASy TrEMBL
Match: A0A2H5QSM6 (NADH-ubiquinone oxidoreductase chain 5 OS=Citrus unshiu OX=55188 GN=CUMW_257990 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 41 MFFISIKRVSFHFPESLSYYSTLAKLMMKQDLDLSADDDDVHSWLDALNERELS 95
          M  IS K VS HFPES SYYSTLAKLMMK+DLDLSADD+DVHSWLDALNERELS
Sbjct: 1  MLIISKKLVSSHFPESQSYYSTLAKLMMKEDLDLSADDNDVHSWLDALNERELS 54

[Close]

BLAST of Bhi06G000457 vs. ExPASy TrEMBL
Match: A0A371IGW3 (NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Mucuna pruriens OX=157652 GN=ND5 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 46  IKRVSFHFPESLSYYSTLAKLMMKQDLDLSADDDDVHSWLDALNERELSR 96
           IKRVS HFPES SYYSTLAKLMMKQDLDLSA DDDVHSWLDALNERELSR
Sbjct: 65  IKRVSSHFPESQSYYSTLAKLMMKQDLDLSA-DDDVHSWLDALNERELSR 113

[Close]

BLAST of Bhi06G000457 vs. ExPASy TrEMBL
Match: A0A6A5P3C1 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00015146 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 48  RVSFHFPESLSYYSTLAKLMMKQDLDLSADDDDVHSWLDALNERELSR 96
           RVS HFPES SYYSTLAKLMMK+D+DLSA DDDVHSWLDALNERELSR
Sbjct: 97  RVSSHFPESQSYYSTLAKLMMKEDMDLSA-DDDVHSWLDALNERELSR 143

[Close]

BLAST of Bhi06G000457 vs. ExPASy TrEMBL
Match: A0A6A5PA52 (Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00039611 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 31 VKTGGGLVERMFFISIK-RVSFHFPESLSYYSTLAKLMMKQDLDLSADDDDVHSWLDALN 90
          V  GG + + M  + ++ RVS HFPES SYYSTLAKLMMK+DLDLSA DDDVHSWLDALN
Sbjct: 16 VLMGGWISKDMKDLPLRTRVSSHFPESQSYYSTLAKLMMKEDLDLSA-DDDVHSWLDALN 75

Query: 91 ERELSR 96
          EREL R
Sbjct: 76 ERELCR 80

[Close]

BLAST of Bhi06G000457 vs. ExPASy TrEMBL
Match: A0A6A5LAZ3 (NADH-ubiquinone oxidoreductase chain 5 OS=Lupinus albus OX=3870 GN=Lal_00038471 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 55 ESLSYYSTLAKLMMKQDLDLSADDDDVHSWLDALNERELSR 96
          E  SYYSTLAKLMMK+DLDLSA DDDVHSWLDALNERELSR
Sbjct: 32 ERASYYSTLAKLMMKEDLDLSA-DDDVHSWLDALNERELSR 71

The following BLAST results are available for this feature:

BLAST of Bhi06G000457 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000457 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi06G000457 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5QSM6	1.4e-15	85.19	NADH-ubiquinone oxidoreductase chain 5 OS=Citrus unshiu OX=55188 GN=CUMW_257990 ...	[more]
A0A371IGW3	3.1e-15	94.00	NADH-ubiquinone oxidoreductase chain 5 (Fragment) OS=Mucuna pruriens OX=157652 G...	[more]
A0A6A5P3C1	1.3e-13	89.58	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00015146 PE=4 SV=1	[more]
A0A6A5PA52	1.3e-13	71.21	Uncharacterized protein (Fragment) OS=Lupinus albus OX=3870 GN=Lal_00039611 PE=3...	[more]
A0A6A5LAZ3	1.1e-09	90.24	NADH-ubiquinone oxidoreductase chain 5 OS=Lupinus albus OX=3870 GN=Lal_00038471 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000457	Bhi06M000457	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003735	structural constituent of ribosome