Bhi06G000456 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000456
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ATP synthase subunit beta, chloroplastic
Location	chr6: 12311694 .. 12311918 (-)
RNA-Seq Expression	Bhi06G000456
Synteny	Bhi06G000456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATAAATCCTACTACTTCTGGTCCTGAAATTTCCACGCTTGAAAAAAACAACTTGGGACGTATCGCTCAAATCATTGGTCCAGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTGAAAGGTCGAGATACTGCCGGTCAAGAAATTAATGTGACTTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGA

mRNA sequence

ATGAGAATAAATCCTACTACTTCTGGTCCTGAAATTTCCACGCTTGAAAAAAACAACTTGGGACGTATCGCTCAAATCATTGGTCCAGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTGAAAGGTCGAGATACTGCCGGTCAAGAAATTAATGTGACTTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGA

Coding sequence (CDS)

ATGAGAATAAATCCTACTACTTCTGGTCCTGAAATTTCCACGCTTGAAAAAAACAACTTGGGACGTATCGCTCAAATCATTGGTCCAGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTGAAAGGTCGAGATACTGCCGGTCAAGAAATTAATGTGACTTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGA

Protein sequence

MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEINVTFDDSRFILGKGE

Homology

[Close]

BLAST of Bhi06G000456 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-26
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MR NPTTS PE+S  EK NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQEIN
Sbjct: 1  MRTNPTTSNPEVSIREKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTLGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy Swiss-Prot
Match: A6MM43 (ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-27
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+STLE+ NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPEVSTLEEKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy Swiss-Prot
Match: Q2PMV0 (ATP synthase subunit beta, chloroplastic OS=Glycine max OX=3847 GN=atpB PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-27
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+S LEK NLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPEVSALEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTVGQQIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy Swiss-Prot
Match: Q4VZI5 (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 5.9e-27
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTS PE+STLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+D +GQEIN
Sbjct: 1  MRINPTTSSPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDISGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy Swiss-Prot
Match: Q9MRR1 (ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora OX=13429 GN=atpB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-26
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGP +STLEK NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy Swiss-Prot
Match: Q0ZJ13 (ATP synthase subunit beta, chloroplastic OS=Vitis vinifera OX=29760 GN=atpB PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-26
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGP +STLEK NLGRIAQIIGPVLDVAFPPGKMPNIYNAL+VKGRDT GQ+IN
Sbjct: 1  MRINPTTSGPGVSTLEKKNLGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy TrEMBL
Match: A0A343F2C3 (ATP synthase subunit beta, chloroplastic OS=Citrullus colocynthis OX=252529 GN=atpB PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+STLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGKDTAGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy TrEMBL
Match: A0A346QNJ3 (ATP synthase subunit beta, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=atpB PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+STLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy TrEMBL
Match: A0A6H0EQM2 (ATP synthase subunit beta, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=atpB PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+STLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy TrEMBL
Match: A0A6H0EV22 (ATP synthase subunit beta, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=atpB PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+STLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

[Close]

BLAST of Bhi06G000456 vs. ExPASy TrEMBL
Match: A0A6H0ER26 (ATP synthase subunit beta, chloroplastic OS=Hodgsonia heteroclita OX=386184 GN=atpB PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.0e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MRINPTTSGPEISTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGRDTAGQEIN 60
          MRINPTTSGPE+STLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKG+DTAGQEIN
Sbjct: 1  MRINPTTSGPEVSTLEKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKGQDTAGQEIN 60

Query: 61 VT 63
          VT
Sbjct: 61 VT 62

The following BLAST results are available for this feature:

BLAST of Bhi06G000456 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	3.0e-26	87.10	ATP synthase subunit beta	[more]

BLAST of Bhi06G000456 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM43	4.5e-27	90.32	ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB ...	[more]
Q2PMV0	4.5e-27	91.94	ATP synthase subunit beta, chloroplastic OS=Glycine max OX=3847 GN=atpB PE=3 SV=...	[more]
Q4VZI5	5.9e-27	91.94	ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3...	[more]
Q9MRR1	1.0e-26	90.32	ATP synthase subunit beta, chloroplastic OS=Cinnamomum camphora OX=13429 GN=atpB...	[more]
Q0ZJ13	1.0e-26	90.32	ATP synthase subunit beta, chloroplastic OS=Vitis vinifera OX=29760 GN=atpB PE=3...	[more]

BLAST of Bhi06G000456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A343F2C3	3.1e-26	96.77	ATP synthase subunit beta, chloroplastic OS=Citrullus colocynthis OX=252529 GN=a...	[more]
A0A346QNJ3	4.0e-26	96.77	ATP synthase subunit beta, chloroplastic OS=Hodgsonia macrocarpa OX=2184935 GN=a...	[more]
A0A6H0EQM2	4.0e-26	96.77	ATP synthase subunit beta, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=atpB PE=...	[more]
A0A6H0EV22	4.0e-26	96.77	ATP synthase subunit beta, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=a...	[more]
A0A6H0ER26	4.0e-26	96.77	ATP synthase subunit beta, chloroplastic OS=Hodgsonia heteroclita OX=386184 GN=a...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.10.170		coord: 12..68 e-value: 2.0E-13 score: 52.0
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..64
None	No IPR available	PANTHER	PTHR15184:SF65	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	coord: 1..64
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 23..57 e-value: 4.4E-8 score: 33.5
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 19..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000456	Bhi06M000456	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism