Bhi06G000393 (gene) Wax gourd (B227) v1

Overview
NameBhi06G000393
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionMetalloendoproteinase 2-MMP
Locationchr6: 10799538 .. 10799798 (+)
RNA-Seq ExpressionBhi06G000393
SyntenyBhi06G000393
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTAAAACTCACAATTACATTTTTCAGAAATTGTGGGCCAATAGCTGACAATTATATTGCTTTCAAAGAGGAGAGCATGGAGATCGGAAATCCTTTTGATGGACCAGGGAATGTTGAACTGCTTCTGCATCCAACTGATGGGAGATTGCACTTCGATGGGAACGAGAGTTTGGTCGCGGGGTGGTTGATAATGAGCCTTAATGTAATGACTTTGTGGCACTTCATGAGCTTGGACATGTTCTTGGACTTGGCATAA

mRNA sequence

ATGGCTTTAAAACTCACAATTACATTTTTCAGAAATTGTGGGCCAATAGCTGACAATTATATTGCTTTCAAAGAGGAGAGCATGGAGATCGGAAATCCTTTTGATGGACCAGGGAATGTTGAACTGCTTCTGCATCCAACTGATGGGAGATTGCACTTCGATGGGAACGAGAGTTTGGTCGCGGGGTGGTTGATAATGAGCCTTAATGTAATGACTTTGTGGCACTTCATGAGCTTGGACATGTTCTTGGACTTGGCATAA

Coding sequence (CDS)

ATGGCTTTAAAACTCACAATTACATTTTTCAGAAATTGTGGGCCAATAGCTGACAATTATATTGCTTTCAAAGAGGAGAGCATGGAGATCGGAAATCCTTTTGATGGACCAGGGAATGTTGAACTGCTTCTGCATCCAACTGATGGGAGATTGCACTTCGATGGGAACGAGAGTTTGGTCGCGGGGTGGTTGATAATGAGCCTTAATGTAATGACTTTGTGGCACTTCATGAGCTTGGACATGTTCTTGGACTTGGCATAA

Protein sequence

MALKLTITFFRNCGPIADNYIAFKEESMEIGNPFDGPGNVELLLHPTDGRLHFDGNESLVAGWLIMSLNVMTLWHFMSLDMFLDLA
Homology
[Close]
BLAST of Bhi06G000393 vs. ExPASy TrEMBL
Match: D7TWW2 (ZnMc domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0066g01990 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 8   TFFRNCGP-IADNYIAFKEESMEIGNPFDGPGNVELLLH---PTDGRLHFDGNESLVAGW 67
           TF R   P IA+ YI+FK      G PFDG G +  L H   PTDGR HFDG+E+ V G 
Sbjct: 182 TFERTSDPKIANLYISFKVRDHGDGRPFDGRGGI--LAHAFAPTDGRFHFDGDETWVIGA 241

Query: 68  LIMSLNVMTL 74
           +  S+++ T+
Sbjct: 242 VANSMDLQTV 249

[Close]
BLAST of Bhi06G000393 vs. ExPASy TrEMBL
Match: A0A438JIT9 (Metalloendoproteinase 2-MMP OS=Vitis vinifera OX=29760 GN=2MMP_4 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 8   TFFRNCGP-IADNYIAFKEESMEIGNPFDGPGNVELLLH---PTDGRLHFDGNESLVAGW 67
           TF R   P IA+ YI+FK      G PFDG G +  L H   PTDGR HFDG+E+ V G 
Sbjct: 189 TFERTSDPKIANLYISFKVRDHGDGRPFDGRGGI--LAHAFAPTDGRFHFDGDETWVIGA 248

Query: 68  LIMSLNVMTL 74
           +  S+++ T+
Sbjct: 249 VANSMDLQTV 256

[Close]
BLAST of Bhi06G000393 vs. ExPASy TrEMBL
Match: A0A438EFZ5 (Metalloendoproteinase 2-MMP OS=Vitis vinifera OX=29760 GN=2MMP_11 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 8   TFFRNCGP-IADNYIAFKEESMEIGNPFDGPGNVELLLH---PTDGRLHFDGNESLVAGW 67
           TF R   P IA+ YI+FK      G PFDG G +  L H   PTDGR HFDG+E+ V G 
Sbjct: 189 TFERTSDPKIANLYISFKVRDHGDGRPFDGRGGI--LAHAFAPTDGRFHFDGDETWVIGA 248

Query: 68  LIMSLNVMTL 74
           +  S+++ T+
Sbjct: 249 VANSMDLQTV 256

The following BLAST results are available for this feature:
BLAST of Bhi06G000393 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G000393 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi06G000393 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D7TWW21.7e-0445.71ZnMc domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_14s0066g01990 P... [more]
A0A438JIT91.7e-0445.71Metalloendoproteinase 2-MMP OS=Vitis vinifera OX=29760 GN=2MMP_4 PE=3 SV=1[more]
A0A438EFZ51.7e-0445.71Metalloendoproteinase 2-MMP OS=Vitis vinifera OX=29760 GN=2MMP_11 PE=3 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000393Bhi06M000393mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008233 peptidase activity