Bhi06G000379 (gene) Wax gourd (B227) v1

Overview
NameBhi06G000379
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Description50S ribosomal protein L16, chloroplastic
Locationchr6: 10296170 .. 10296418 (+)
RNA-Seq ExpressionBhi06G000379
SyntenyBhi06G000379
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAATGGAGTAGCTGAAAATATAGCCAGAAAAACTATTTCAATAGCGGCATCCAAAATGCCTATACAAACCCAAATCATTACTTCAAGATAG

mRNA sequence

ATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAATGGAGTAGCTGAAAATATAGCCAGAAAAACTATTTCAATAGCGGCATCCAAAATGCCTATACAAACCCAAATCATTACTTCAAGATAG

Coding sequence (CDS)

ATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGAATGGAGTAGCTGAAAATATAGCCAGAAAAACTATTTCAATAGCGGCATCCAAAATGCCTATACAAACCCAAATCATTACTTCAAGATAG

Protein sequence

MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENIARKTISIAASKMPIQTQIITSR
Homology
[Close]
BLAST of Bhi06G000379 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-36
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILYEM GV ENI
Sbjct: 54  MTRNVRRGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ I S
Sbjct: 114 ARKAISIAASKMPIKTQFIIS 134

[Close]
BLAST of Bhi06G000379 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 113.6 bits (283), Expect = 7.4e-26
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+YEM GV+E +
Sbjct: 881 MTRNIGRGLTVRVHIFADKPVTVRPPETRMGRGKGAPAFWVAVVKPGKIIYEMGGVSEKV 940

Query: 61  ARKTISIAASKMPIQTQIITSR 83
           AR+ ISIAASK+P +T+ I S+
Sbjct: 941 AREAISIAASKLPAKTKFIISK 962

[Close]
BLAST of Bhi06G000379 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 80.9 bits (198), Expect = 5.3e-16
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           M+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I +EM+GV+   
Sbjct: 98  MSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLAN 157

Query: 61  ARKTISIAASKMPIQTQII 80
           AR+  ++AA K    T+ +
Sbjct: 158 ARQAATLAAHKPCSSTKFV 176

[Close]
BLAST of Bhi06G000379 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-38
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 54  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ ITS
Sbjct: 114 ARKAISIAASKMPIRTQFITS 134

[Close]
BLAST of Bhi06G000379 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-37
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM GVAENI
Sbjct: 54  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGVAENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ I S
Sbjct: 114 ARKAISIAASKMPIRTQFIIS 134

[Close]
BLAST of Bhi06G000379 vs. ExPASy Swiss-Prot
Match: Q09ME0 (50S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-37
Identity = 75/81 (92.59%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 55  MTRNVRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 114

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ I S
Sbjct: 115 ARKAISIAASKMPIRTQFIIS 135

[Close]
BLAST of Bhi06G000379 vs. ExPASy Swiss-Prot
Match: Q2L940 (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.4e-37
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 54  MTRNVRRGGKIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ I S
Sbjct: 114 ARKAISIAASKMPIKTQFIIS 134

[Close]
BLAST of Bhi06G000379 vs. ExPASy Swiss-Prot
Match: B1A972 (50S ribosomal protein L16, chloroplastic OS=Carica papaya OX=3649 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.0e-37
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRN RRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 54  MTRNIRRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           AR+ ISIAASKMPI+TQ I S
Sbjct: 114 ARRAISIAASKMPIKTQFIIS 134

[Close]
BLAST of Bhi06G000379 vs. ExPASy TrEMBL
Match: A0A218KG73 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 54  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ ITS
Sbjct: 114 ARKAISIAASKMPIRTQFITS 134

[Close]
BLAST of Bhi06G000379 vs. ExPASy TrEMBL
Match: A0A1X9Q1F7 (50S ribosomal protein L16, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 52  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 111

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ ITS
Sbjct: 112 ARKAISIAASKMPIRTQFITS 132

[Close]
BLAST of Bhi06G000379 vs. ExPASy TrEMBL
Match: A0A1S4EU42 (50S ribosomal protein L16, chloroplastic OS=Cucumis melo OX=3656 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 54  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 113

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ ITS
Sbjct: 114 ARKAISIAASKMPIRTQFITS 134

[Close]
BLAST of Bhi06G000379 vs. ExPASy TrEMBL
Match: A0A249S030 (50S ribosomal protein L16, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 38  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 97

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ ITS
Sbjct: 98  ARKAISIAASKMPIRTQFITS 118

[Close]
BLAST of Bhi06G000379 vs. ExPASy TrEMBL
Match: A0A1P8LEA5 (Ribosomal protein L16 OS=Citrullus mucosospermus OX=519315 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1   MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMNGVAENI 60
           MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEM+GVAENI
Sbjct: 38  MTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYEMSGVAENI 97

Query: 61  ARKTISIAASKMPIQTQIITS 82
           ARK ISIAASKMPI+TQ ITS
Sbjct: 98  ARKAISIAASKMPIRTQFITS 118

The following BLAST results are available for this feature:
BLAST of Bhi06G000379 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.11.6e-3687.65ribosomal protein L16 [more]
AT2G28830.17.4e-2664.63PLANT U-BOX 12 [more]
ATMG00080.15.3e-1648.10ribosomal protein L16 [more]
BLAST of Bhi06G000379 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZN11.7e-3895.0650S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=... [more]
B1NWI71.1e-3793.8350S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P... [more]
Q09ME02.4e-3792.5950S ribosomal protein L16, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl16 PE=... [more]
Q2L9405.4e-3791.3650S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 ... [more]
B1A9727.0e-3791.3650S ribosomal protein L16, chloroplastic OS=Carica papaya OX=3649 GN=rpl16 PE=3 ... [more]
BLAST of Bhi06G000379 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG736.1e-3695.0650S ribosomal protein L16, chloroplastic OS=Cucumis sativus var. hardwickii OX=3... [more]
A0A1X9Q1F76.1e-3695.0650S ribosomal protein L16, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 G... [more]
A0A1S4EU426.1e-3695.0650S ribosomal protein L16, chloroplastic OS=Cucumis melo OX=3656 GN=rpl16 PE=3 S... [more]
A0A249S0306.1e-3695.0650S ribosomal protein L16, chloroplastic OS=Cucumis melo var. cantalupensis OX=3... [more]
A0A1P8LEA56.1e-3695.06Ribosomal protein L16 OS=Citrullus mucosospermus OX=519315 GN=rpl16 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 35..64
score: 55.6
coord: 5..34
score: 67.87
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 1..74
e-value: 6.7E-35
score: 117.9
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 1..80
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 2..79
e-value: 4.7E-29
score: 101.1
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 1..79
e-value: 2.72681E-33
score: 108.733
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 1..82
e-value: 5.4E-37
score: 129.4
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 1..81
NoneNo IPR availablePANTHERPTHR12220:SF1339S RIBOSOMAL PROTEIN L16, MITOCHONDRIALcoord: 1..80
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 29..40
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 6..17

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000379Bhi06M000379mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome