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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGAGGGAGAGAAAAGGGCTGGTCTGGCTTTGAAAATAGATACATCTTAGAGGATGAGGCTCGTGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTGTAAACTTGACCAAGGATCCAAAGAGTTTGAAGAATATAGCGTTGATTTTCATCAGAAGAAAAAGTCTATAAAAGAAAAGGATGATATGCAGAAAATCAGAAGCAAAGTCAATGATAAACTTAATGCTCGTTTGGCGAGTGACCAAGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATATTGACGTTGAGAAGAAGCTTAGGACACCCATGTTTAATCAACTTACTAGTCCTTACCATGAGCCATTTTGTCTTGATATATACATATCGAAGGCCTCAGTTCGAGCCTGCATCATTCACCAATAGTATGGTTGTTGCTGTGACACATTCAATTTCCAAAGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGATAACACTCCAAGAAAAGGCGAGAGGATAG mRNA sequence ATGAGAGGGAGAGAAAAGGGCTGGTCTGGCTTTGAAAATAGATACATCTTAGAGGATGAGGCTCGTGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTGTAAACTTGACCAAGGATCCAAAGAGTTTGAAGAATATAGCGTTGATTTTCATCAGAAGAAAAAGTCTATAAAAGAAAAGGATGATATGCAGAAAATCAGAAGCAAAGTCAATGATAAACTTAATGCTCGTTTGGCGAGTGACCAAGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATATTGACGTTGAGAAGAAGCTTAGGACACCCATGCCTCAGTTCGAGCCTGCATCATTCACCAATAGTATGGTTGTTGCTGTGACACATTCAATTTCCAAAGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGATAACACTCCAAGAAAAGGCGAGAGGATAG Coding sequence (CDS) ATGAGAGGGAGAGAAAAGGGCTGGTCTGGCTTTGAAAATAGATACATCTTAGAGGATGAGGCTCGTGACCCAGTTGATTATTGTGATTCAGATTTTGATGATATTGACAACATGAGAATACGTGGAAATCTCTTCTGTAAACTTGACCAAGGATCCAAAGAGTTTGAAGAATATAGCGTTGATTTTCATCAGAAGAAAAAGTCTATAAAAGAAAAGGATGATATGCAGAAAATCAGAAGCAAAGTCAATGATAAACTTAATGCTCGTTTGGCGAGTGACCAAGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTTGAAAGGGAGAATATTGACGTTGAGAAGAAGCTTAGGACACCCATGCCTCAGTTCGAGCCTGCATCATTCACCAATAGTATGGTTGTTGCTGTGACACATTCAATTTCCAAAGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGATAACACTCCAAGAAAAGGCGAGAGGATAG Protein sequence MRGREKGWSGFENRYILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDFHQKKKSIKEKDDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVERENIDVEKKLRTPMPQFEPASFTNSMVVAVTHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLITLQEKARG
Homology
BLAST of Bhi06G000295 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein ) HSP 1 Score: 109.0 bits (271), Expect = 4.2e-24 Identity = 82/195 (42.05%), Postives = 108/195 (55.38%), Query Frame = 0
Query: 16 ILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDFHQK---KKSIKEK 75
IL+DE D D D+IDNMRIRG+LF KLD+GSKEFEEY+ DFH+K K + KE+
Sbjct: 89 ILDDE--------DPDHDEIDNMRIRGDLFFKLDRGSKEFEEYNYDFHRKNQHKNAKKEQ 148
Query: 76 DDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVERENIDVEKKLRTPMPQFEPASF- 135
+ ++ + K ++K R + K + + + N V+K+ RT A F
Sbjct: 149 NQEEETKIKKDNKKEVR--DEYKKRNDSFTGE---TDHPNEAVKKRERTFTFNQLTAPFH 208
Query: 136 ---------------------TNSMVVAVTHSISKDMKFDLTSRKDSSACAAVGAVLAQR 186
S VV V HSISKDMKFDL SR++ +ACAAVGAVLAQR
Sbjct: 209 YPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLAQR 268
BLAST of Bhi06G000295 vs. ExPASy TrEMBL
Match: A0A0A0KSG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638320 PE=4 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68 Identity = 150/204 (73.53%), Postives = 156/204 (76.47%), Query Frame = 0
Query: 4 REKGWSGFENRYILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDFH 63
REKGWSGFENRY LEDEA DPVDYCDSDFDDIDNMRIRGNLF KLDQ SKEFEE S+DFH
Sbjct: 90 REKGWSGFENRYSLEDEAHDPVDYCDSDFDDIDNMRIRGNLFYKLDQASKEFEECSLDFH 149
Query: 64 QKKKSIKEKDDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVERENIDVEKKLRTP- 123
+KKKS+KEK+DM K RSKVNDKL+ LAS QVKLPEH+KNKYVIVEREN DVEKKLRTP
Sbjct: 150 RKKKSLKEKEDMVKRRSKVNDKLDKCLASGQVKLPEHLKNKYVIVERENDDVEKKLRTPT 209
Query: 124 -----MPQFEPASF----------------TNSMVVAVTHSISKDMKFDLTSRKDSSACA 183
P EP S VVAV HSISKDMKFDLTSRKDSSACA
Sbjct: 210 FNQLTSPYHEPFCLDIFISKASVRACIIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACA 269
Query: 184 AVGAVLAQRALADDIHNLITLQEK 186
AVGAVLAQRAL DDIHNLI K
Sbjct: 270 AVGAVLAQRALGDDIHNLIYTPRK 293
BLAST of Bhi06G000295 vs. ExPASy TrEMBL
Match: A0A1S3CAH6 (uncharacterized protein LOC103498514 OS=Cucumis melo OX=3656 GN=LOC103498514 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 8.2e-68 Identity = 148/205 (72.20%), Postives = 157/205 (76.59%), Query Frame = 0
Query: 3 GREKGWSGFENRYILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDF 62
GREKGWSG ENRY LEDEA DPVDYCDSDFDDIDNMRIRGNLF KLD+GSKEF+EYS+DF
Sbjct: 89 GREKGWSGLENRYSLEDEAHDPVDYCDSDFDDIDNMRIRGNLFYKLDRGSKEFDEYSLDF 148
Query: 63 HQKKKSIKEKDDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVERENIDVEKKLRTP 122
H+KKKSIKEK++ +K RSKVNDKL+ L S QVKLPEH+KNKYVIVEREN DVEKKLRTP
Sbjct: 149 HRKKKSIKEKENREKSRSKVNDKLDKCLPSGQVKLPEHLKNKYVIVERENDDVEKKLRTP 208
Query: 123 M------PQFEPASF----------------TNSMVVAVTHSISKDMKFDLTSRKDSSAC 182
EP S VVAV HSISKDMKFDLTSRKDSSAC
Sbjct: 209 TFNQLTGLYHEPFCLDIYISKASVRACIIHRVTSKVVAVAHSISKDMKFDLTSRKDSSAC 268
Query: 183 AAVGAVLAQRALADDIHNLITLQEK 186
AAVGAVLAQRALADDIHNLI K
Sbjct: 269 AAVGAVLAQRALADDIHNLIYTPRK 293
BLAST of Bhi06G000295 vs. ExPASy TrEMBL
Match: A0A6J1I8E0 (uncharacterized protein LOC111472322 OS=Cucurbita maxima OX=3661 GN=LOC111472322 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66 Identity = 144/205 (70.24%), Postives = 154/205 (75.12%), Query Frame = 0
Query: 3 GREKGWSGFENRYILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDF 62
GREKG SGF+NRY LEDE DP+DYCDS+FDDIDNMRIRGNLF KLD+GSKEFEEYS DF
Sbjct: 89 GREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRGNLFYKLDRGSKEFEEYSFDF 148
Query: 63 HQKKKSIKEKDDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVERENIDVEKKLRTP 122
H+KKKSIKEK+D Q+ +SKVNDK N LAS VKLPEHVKNKYVI+EREN D EKKLRTP
Sbjct: 149 HRKKKSIKEKEDTQQNKSKVNDKPNNHLASGHVKLPEHVKNKYVIIERENNDFEKKLRTP 208
Query: 123 ------MPQFEPASF----------------TNSMVVAVTHSISKDMKFDLTSRKDSSAC 182
P EP S VVAV HSISKDMKFDLTSRKDSSAC
Sbjct: 209 TFNQLTAPYHEPFCLDIYISKASVRACIIHRVTSKVVAVAHSISKDMKFDLTSRKDSSAC 268
Query: 183 AAVGAVLAQRALADDIHNLITLQEK 186
AAVGAVLAQRALADDIHNL+ K
Sbjct: 269 AAVGAVLAQRALADDIHNLVYTPRK 293
BLAST of Bhi06G000295 vs. ExPASy TrEMBL
Match: A0A6J1F7N1 (uncharacterized protein LOC111441610 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441610 PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 8.5e-65 Identity = 144/206 (69.90%), Postives = 154/206 (74.76%), Query Frame = 0
Query: 3 GREKGWSGFENRYILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDF 62
GREKG SGF+NRY LEDE DP+DYCDS+FDDIDNMRIRGNLF KLD+GSKEFEEYS DF
Sbjct: 89 GREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRGNLFYKLDRGSKEFEEYSFDF 148
Query: 63 HQKKKSIKEKDDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVER-ENIDVEKKLRT 122
H+KKKSIKEK+D Q+ +SKVNDK N LAS VKLPEHVKNKYVI+ER EN D EKKLRT
Sbjct: 149 HRKKKSIKEKEDTQQNKSKVNDKPNNHLASGHVKLPEHVKNKYVIIEREENNDFEKKLRT 208
Query: 123 P------MPQFEPASFT----------------NSMVVAVTHSISKDMKFDLTSRKDSSA 182
P P EP S VVAV HSISKDMKFDLTSRKDSSA
Sbjct: 209 PTFNQLTAPYHEPFCLDIYISKASVRACIIHRGTSKVVAVAHSISKDMKFDLTSRKDSSA 268
Query: 183 CAAVGAVLAQRALADDIHNLITLQEK 186
CAAVGAVLAQRALADDIHNL+ K
Sbjct: 269 CAAVGAVLAQRALADDIHNLVYTPRK 294
BLAST of Bhi06G000295 vs. ExPASy TrEMBL
Match: A0A6J1C8X9 (uncharacterized protein LOC111009286 OS=Momordica charantia OX=3673 GN=LOC111009286 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 7.9e-63 Identity = 140/205 (68.29%), Postives = 151/205 (73.66%), Query Frame = 0
Query: 3 GREKGWSGFENRYILEDEARDPVDYCDSDFDDIDNMRIRGNLFCKLDQGSKEFEEYSVDF 62
GREK WSG EN+Y LE+E DPVDYCDSD DDIDNMRIRGNLF KLD+GSKEFEEYS DF
Sbjct: 89 GREKAWSGLENKYFLEEEDHDPVDYCDSDLDDIDNMRIRGNLFYKLDRGSKEFEEYSFDF 148
Query: 63 HQKKKSIKEKDDMQKIRSKVNDKLNARLASDQVKLPEHVKNKYVIVERENIDVEKKLRTP 122
H+KKKSIKE D ++ RS++NDK + LAS VKLPEHVKNKYVIVER+N DVEKKLRTP
Sbjct: 149 HRKKKSIKE--DQKQSRSRINDKPDNCLASGYVKLPEHVKNKYVIVERDNDDVEKKLRTP 208
Query: 123 M------PQFEPASF----------------TNSMVVAVTHSISKDMKFDLTSRKDSSAC 182
P EP S VVAV HSISKDMKFDLTSRKDSSAC
Sbjct: 209 TFNQLTGPYHEPFCLDIYISKASVRACIIHRVTSKVVAVAHSISKDMKFDLTSRKDSSAC 268
Query: 183 AAVGAVLAQRALADDIHNLITLQEK 186
AAVGAVLAQRALADDIHNL+ K
Sbjct: 269 AAVGAVLAQRALADDIHNLVYTPRK 291
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| AT3G22450.1 | 4.2e-24 | 42.05 | Ribosomal L18p/L5e family protein | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KSG6 | 1.3e-68 | 73.53 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G638320 PE=4 SV=1 | [more] |
| A0A1S3CAH6 | 8.2e-68 | 72.20 | uncharacterized protein LOC103498514 OS=Cucumis melo OX=3656 GN=LOC103498514 PE=... | [more] |
| A0A6J1I8E0 | 2.6e-66 | 70.24 | uncharacterized protein LOC111472322 OS=Cucurbita maxima OX=3661 GN=LOC111472322... | [more] |
| A0A6J1F7N1 | 8.5e-65 | 69.90 | uncharacterized protein LOC111441610 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
| A0A6J1C8X9 | 7.9e-63 | 68.29 | uncharacterized protein LOC111009286 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR036967 | Ribosomal protein S11 superfamily | GENE3D | 3.30.420.80 | Ribosomal protein S11 | coord: 129..187
e-value: 9.4E-7
score: 30.8 |
| IPR005484 | Ribosomal protein L18 | PANTHER | PTHR12899 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL | coord: 25..122
coord: 133..180 |
| None | No IPR available | PANTHER | PTHR12899:SF7 | EXPRESSED PROTEIN | coord: 25..122
coord: 133..180 |
| None | No IPR available | SUPERFAMILY | 53137 | Translational machinery components | coord: 130..180 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0008097 |
5S rRNA binding |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
|
