Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGGCCAAATCGAGGGCGGAGATGGGCTAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTCCAACGTCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCAGCGGAGAGAAATTTGAGGACTGATGAAGGAGGCCCCACAGGCGCCGGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAGATTGAGAATAACAGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGAGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGACATTTTTTAA
mRNA sequence
ATGGAGCGGCCAAATCGAGGGCGGAGATGGGCTAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTCCAACGTCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCAGCGGAGAGAAATTTGAGGACTGATGAAGGAGGCCCCACAGGCGCCGGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAGATTGAGAATAACAGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGAGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGACATTTTTTAA
Coding sequence (CDS)
ATGGAGCGGCCAAATCGAGGGCGGAGATGGGCTAATTTGAAGCAACGGCTAGGATTGAAGGGGATGGGGTGCTGTGGAGGTTCATGGAGTCCAACGTCGTCAACTTTGACAATGATTGAAGGGTTTAGCTTAAGCCGCCATGGAAGTAGCCGCAGCCATAGAGAAGATGGGGCTCGGAGCTCTGCAGCTTCCGGTATGAACTTGGCGATGGCTCTGGCAGCGGAGAGAAATTTGAGGACTGATGAAGGAGGCCCCACAGGCGCCGGTGATGTGAAATCACTGATGAGATTGTTTGAAGAAATGGACGGTGGGGATTGGAAAACAAAAAGAAAGGAGATTGAGAATAACAGTGATTGGATGTGCTGCGTGTGCATGGAAAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACACCTTCTGTAGGGTATGTTCTAGAGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGACATTTTTTAA
Protein sequence
MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGARSSAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIENNSDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Homology
BLAST of Bhi05G001806 vs. TAIR 10
Match:
AT4G03965.1 (RING/U-box superfamily protein )
HSP 1 Score: 139.8 bits (351), Expect = 2.0e-33
Identity = 89/178 (50.00%), Postives = 106/178 (59.55%), Query Frame = 0
Query: 8 RRWANLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGFSLSRHGSSRSHREDGARSSAASG 67
RR LK+RLG K +GCCG +W TS+T + +R S H G
Sbjct: 37 RRKRTLKERLGFKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGSDH----VTGPLNQG 96
Query: 68 MNLAMALAAERNLRTDEGGPTGA-GDVK-SLMRLFEEMDGGDWKTKRKEIEN-------- 127
MNLA ALAAERN RT+E +G+ +K SLMRL EE + E E
Sbjct: 97 MNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEE-TAERVVVEENETERVTASASST 156
Query: 128 ----NSDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
N+D +CCVCM R KGAAFIPCGHTFCRVCSRE+WLNRG+CP+CNR IIEILDI+
Sbjct: 157 VRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209
BLAST of Bhi05G001806 vs. TAIR 10
Match:
AT4G22250.1 (RING/U-box superfamily protein )
HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 82/177 (46.33%), Postives = 99/177 (55.93%), Query Frame = 0
Query: 8 RRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDG----ARSSAA 67
RR LK+RL K +GCCG +W+ + T + + E G + +
Sbjct: 38 RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDDEIEELQIETGLVLESDHGSG 97
Query: 68 SGMNLAMALAAERNLR--TDEGGPTGAGDVKSLMRLFEEM-------DGGDWKTKRKEIE 127
+GMNLA AL AER R + E SLMRL EE DG + + I
Sbjct: 98 TGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGKETEILTASIG 157
Query: 128 --NNSDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
+D +CCVCM R KGAAFIPCGHTFCRVCSRELWLNRG+CP+CNR IIEILDIF
Sbjct: 158 TLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214
BLAST of Bhi05G001806 vs. TAIR 10
Match:
AT1G62370.1 (RING/U-box superfamily protein )
HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 72/174 (41.38%), Postives = 89/174 (51.15%), Query Frame = 0
Query: 9 RWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGARS-------- 68
+W LKQRL +GCCG P + L E + ++
Sbjct: 40 KWTTLKQRLRFDWVGCCG---KPLTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGT 99
Query: 69 -----SAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIEN 128
+ S NLA ALA ER E A LMRL E DG D T
Sbjct: 100 ELDCLTRGSTRNLAEALAEERLAHVTE--EETAVTKVPLMRLLAESDGCDSTTTWL---- 159
Query: 129 NSDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
+D +CCVCM R KGAAFIPCGHT+CRVCSRE+W+NRGTCP+CNRSI ++LD++
Sbjct: 160 GNDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204
BLAST of Bhi05G001806 vs. TAIR 10
Match:
AT3G25030.1 (RING/U-box superfamily protein )
HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 76/193 (39.38%), Postives = 99/193 (51.30%), Query Frame = 0
Query: 1 MERPNRGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIE---------GFSLSRH 60
M+R +R R W +L+++L LK G S + S T I GF LS
Sbjct: 63 MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122
Query: 61 GSSRSHREDGARSSAASGMNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDG 120
G+ SS + L LA ER L E +V+ SLM L EE +G
Sbjct: 123 GNVTEE-----ASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEG 182
Query: 121 G-DWKTKRKEIENN------SDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
+ + E E ++ CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 183 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 242
BLAST of Bhi05G001806 vs. TAIR 10
Match:
AT3G25030.2 (RING/U-box superfamily protein )
HSP 1 Score: 106.7 bits (265), Expect = 1.9e-23
Identity = 76/193 (39.38%), Postives = 99/193 (51.30%), Query Frame = 0
Query: 1 MERPNRGRR----WANLKQRLGLKGMGCCGGSWSPTSSTLTMIE---------GFSLSRH 60
M+R +R R W +L+++L LK G S + S T I GF LS
Sbjct: 63 MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122
Query: 61 GSSRSHREDGARSSAASGMNLAMALAAERNLRTDEGGPTGAGDVK----SLMRLFEEMDG 120
G+ SS + L LA ER L E +V+ SLM L EE +G
Sbjct: 123 GNVTEE-----ASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEG 182
Query: 121 G-DWKTKRKEIENN------SDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCP 170
+ + E E ++ CCVCM RSKGAAFIPCGHTFCR+CSRELW+ RG CP
Sbjct: 183 QMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCP 242
BLAST of Bhi05G001806 vs. ExPASy Swiss-Prot
Match:
B3H754 (E3 ubiquitin-protein ligase APD3 OS=Arabidopsis thaliana OX=3702 GN=APD3 PE=2 SV=1)
HSP 1 Score: 49.7 bits (117), Expect = 3.8e-05
Identity = 17/59 (28.81%), Postives = 33/59 (55.93%), Query Frame = 0
Query: 112 EIENNSDWMCCVCMERSKGAAFIPCGH-TFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
++E ++ +C +C + + F+PCGH C C ++ +G CPIC + +I + I+
Sbjct: 344 DVEASNKSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKMIHVKRIY 402
BLAST of Bhi05G001806 vs. ExPASy Swiss-Prot
Match:
P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)
HSP 1 Score: 45.8 bits (107), Expect = 5.5e-04
Identity = 20/64 (31.25%), Postives = 33/64 (51.56%), Query Frame = 0
Query: 99 EEMDGGDWKTKRKEIENNSDWMCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC 158
E DGG ++ + + D +C +CM+ K A CGH+FC +C N+ CP C
Sbjct: 30 ENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCC 89
Query: 159 NRSI 163
++ +
Sbjct: 90 SQHL 93
BLAST of Bhi05G001806 vs. ExPASy TrEMBL
Match:
A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1)
HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0
Query: 1 MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGARS 60
MER N GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEG SLSRHGSSRSHREDGARS
Sbjct: 1 MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
Query: 61 SAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIENNSDWM 120
SA+SG+NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKE EN DWM
Sbjct: 61 SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
BLAST of Bhi05G001806 vs. ExPASy TrEMBL
Match:
A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1)
HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0
Query: 1 MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGARS 60
MER N GRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEG SLSRHGSSRSHREDGARS
Sbjct: 1 MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60
Query: 61 SAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIENNSDWM 120
SA+SG+NLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKE EN DWM
Sbjct: 61 SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTGDWM 120
Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169
BLAST of Bhi05G001806 vs. ExPASy TrEMBL
Match:
A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 5.4e-87
Identity = 159/169 (94.08%), Postives = 161/169 (95.27%), Query Frame = 0
Query: 1 MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGARS 60
MER NRGRRWANLKQRLGLKGMGCC GSWSPTSSTLTMIEGFSLS HGSSRS REDG RS
Sbjct: 1 MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60
Query: 61 SAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIENNSDWM 120
SAASGMNLAMALAAERNLR+DEGGPTGA DVKSLMRLFEEMDGGDWKTKRKE ENN DWM
Sbjct: 61 SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNGDWM 120
Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169
BLAST of Bhi05G001806 vs. ExPASy TrEMBL
Match:
A0A0A0KEL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1)
HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 154/169 (91.12%), Postives = 156/169 (92.31%), Query Frame = 0
Query: 1 MERPNRGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGARS 60
MER NR RRW NL+QRLGLKGMGCC GSWSPTSSTLTMIEGFSLS HGSSRS EDG RS
Sbjct: 1 MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60
Query: 61 SAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIENNSDWM 120
SAASGMNLAMALAAERNLR DEGGPTG DVKSLMRLFEEMDGGDWKTKRKE ENN DWM
Sbjct: 61 SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNGDWM 120
Query: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 CCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169
BLAST of Bhi05G001806 vs. ExPASy TrEMBL
Match:
A0A6J1EWQ9 (uncharacterized protein LOC111437226 OS=Cucurbita moschata OX=3662 GN=LOC111437226 PE=4 SV=1)
HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 147/170 (86.47%), Postives = 158/170 (92.94%), Query Frame = 0
Query: 1 MERPNRGRRWANLKQRLGL-KGMGCCGGSWSPTSSTLTMIEGFSLSRHGSSRSHREDGAR 60
MERPNRG+RWANLKQRLGL KG+GCCGGSWS TSSTLTMI+G LSRHGSSRSHR+DG R
Sbjct: 62 MERPNRGQRWANLKQRLGLMKGIGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121
Query: 61 SSAASGMNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKEIENNSDW 120
SSAASGMNLAMALAAERNL T+EGGPT G+VKSL+RLFEE+DGGDWKT+RKE ENN DW
Sbjct: 122 SSAASGMNLAMALAAERNL-TEEGGPT-VGNVKSLVRLFEEIDGGDWKTRRKESENNGDW 181
Query: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 170
+CCVCMERSKGAAFIPCGHTFCRVCSREL LN GTCPIC+RSIIEILDIF
Sbjct: 182 LCCVCMERSKGAAFIPCGHTFCRVCSRELRLNGGTCPICSRSIIEILDIF 229
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
B3H754 | 3.8e-05 | 28.81 | E3 ubiquitin-protein ligase APD3 OS=Arabidopsis thaliana OX=3702 GN=APD3 PE=2 SV... | [more] |
P43254 | 5.5e-04 | 31.25 | E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1HXI8 | 4.4e-89 | 95.27 | RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 ... | [more] |
A0A6J1GME5 | 4.4e-89 | 95.27 | RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=... | [more] |
A0A5A7V0I3 | 5.4e-87 | 94.08 | Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A0A0KEL6 | 4.3e-84 | 91.12 | RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 P... | [more] |
A0A6J1EWQ9 | 2.3e-77 | 86.47 | uncharacterized protein LOC111437226 OS=Cucurbita moschata OX=3662 GN=LOC1114372... | [more] |